cis-Decoder: cDT-Libraries


Drosophila Enhancer of split cDT-library

    A cDT, is a short sequence element of 6 bp or greater that is a perfect match to sequences within CSBs that are present in two or more enhancers. A cDT-library represents a collection of cDTs that are shared by the various enhancers examined.

    All libraries were generated from readouts of the CSB-aligner. Making enhancer-type specific libraries requires two different CSB-libraries generated from functionally different enhancers, a library from the tissue of interest (e.g. neural), and a second library that serves as an 'out-group' (e.g. mesodermal). For the generation of a neural cDT-library, neural CSBs in both forward and reverse directions were copy/pasted into both upper and lower windows of CSB-aligner. The resulting cDTs from this alignment are listed in the 'Result of CSB alignment table' of the CSB-aligner output, in the column titled 'Motif.' Since this cDT list contains multiple copies of different cDTs, the extra copies are removed using the Java applet Puzzamatic 1.0, a freeware created by Ron Surratt. The cDT list that contains all unique cDTs is then alphabetized and sorted by size also using Puzzamatic 1.0. The cDTs, constituting a raw neural cDT-library, were then copy/pasted into a Microsoft Word document. A second CSB-alignment is then performed with the neural CSBs in the top window of CSB-aligner, and mesodermal CSBs in the lower window. The cDTs from this alignment were freed of extra copies as above. These cDTs constituted an unedited common neural/mesodermal cDT-library. The unedited neural and common cDT-libraries are combined and cDTs common to the two libraries (present in the first and second alignments) are both removed using the JavaScript program cDT-cleaner, thus leaving only the neural-specific sequences.

    Frequency of sequence matches for each cDT was assessed using cDT-cataloger and cDT-counter. For example the cDT AACCGT is annotated esp01;bar01-AACCGT to indicate that there was one hits on a Drosophila E(spl) bHLH repressor CSB library and one hit on a Drosophila E(spl) Bearded (Brd) family CSB library.

Drosophila Enhancer of split cDT-library

esp01;bar01-AACCGT
esp01;bar01-AACGGC
esp01;bar01-AACTCG
esp01;bar01-AAGACG
esp00;bar02-AAGGAG
esp01;bar02-AAGGGC
esp02;bar00-AAGTTA
esp02;bar00-AATCCT
esp03;bar00-ACAAGA
esp02;bar00-ACATGA
esp01;bar04-ACCACC
esp03;bar00-ACGACG
esp02;bar02-ACGCGC
esp00;bar02-ACGCTC
esp01;bar01-ACGGTT
esp02;bar00-ACTTAC
esp03;bar01-ACTTAT
esp02;bar00-ACTTCT
esp02;bar00-AGAAGT
esp02;bar00-AGAGAG
esp02;bar00-AGATCT
esp04;bar00-AGCACA
esp02;bar00-AGCACG
esp01;bar02-AGCGTG
esp01;bar01-AGGAAG
esp02;bar00-AGGATT
esp02;bar01-AGGCAA
esp02;bar01-AGGGGA
esp01;bar01-AGGTCA
esp02;bar00-AGTGTA
esp03;bar01-ATAAGT
esp01;bar01-ATCCCA
esp05;bar01-ATCGTG
esp01;bar01-ATCTCA
esp02;bar01-ATGAGG
esp03;bar00-ATGATC
esp02;bar01-ATTCCA
esp01;bar01-CAAACG
esp02;bar00-CAACCC
esp01;bar01-CAACCG
esp03;bar00-CAATCC
esp01;bar01-CACAGC
esp00;bar02-CACATA
esp05;bar01-CACGAG
esp05;bar01-CACGAT
esp01;bar02-CACGCT
esp01;bar01-CACTCA
esp02;bar00-CAGAAG
esp03;bar00-CAGCAC
esp02;bar00-CAGCTA
esp02;bar00-CATAAG
esp02;bar01-CATCCG
esp02;bar01-CATGCA
esp05;bar00-CCACGA
esp03;bar00-CCAGCA
esp02;bar01-CCATCC
esp00;bar02-CCATGG
esp09;bar03-CCCACG
esp01;bar01-CCCCCA
esp02;bar00-CCCTCA
esp02;bar01-CCTCAT
esp00;bar02-CGAACC
esp02;bar00-CGACGC
esp01;bar01-CGAGTT
esp03;bar01-CGATCC
esp02;bar00-CGCGCG
esp01;bar01-CGCGTA
esp02;bar01-CGGATG
esp02;bar01-CGGCGC
esp02;bar00-CGGTAG
esp01;bar01-CGGTTC
esp01;bar01-CGGTTG
esp01;bar01-CGTACA
esp03;bar00-CGTCGT
esp01;bar01-CGTCTT
esp02;bar02-CGTGCC
esp02;bar00-CGTGCT
esp09;bar03-CGTGGG
esp01;bar01-CGTTTG
esp02;bar00-CTACCG
esp00;bar02-CTCCTT
esp05;bar01-CTCGTG
esp02;bar00-CTCTCT
esp02;bar01-CTGAAA
esp02;bar00-CTGCGA
esp01;bar02-CTGCTC
esp02;bar00-CTTATG
esp01;bar01-CTTCCT
esp02;bar00-CTTCTG
esp02;bar01-CTTGCC
esp03;bar00-CTTTAC
esp00;bar03-GAAAGC
esp01;bar02-GAACAC
esp01;bar01-GAACCA
esp01;bar01-GAACCG
esp02;bar00-GAGCAC
esp01;bar02-GAGCAG
esp00;bar02-GAGCGT
esp02;bar00-GAGGCA
esp01;bar02-GAGTGC
esp03;bar00-GATCAT
esp01;bar01-GATTCC
esp03;bar04-GCAAAC
esp03;bar02-GCACGA
esp02;bar00-GCACGC
esp01;bar02-GCACTC
esp02;bar00-GCATGA
esp01;bar02-GCCCTT
esp01;bar01-GCCGTT
esp01;bar01-GCCTGA
esp02;bar01-GCGCCG
esp03;bar00-GCGCGA
esp02;bar02-GCGCGT
esp02;bar00-GCGTCG
esp02;bar00-GCGTGC
esp01;bar01-GCTCAA
esp01;bar01-GCTGTG
esp00;bar03-GCTTTC
esp01;bar01-GGAATC
esp04;bar00-GGATCA
esp00;bar02-GGATCC
esp03;bar01-GGATCG
esp02;bar01-GGATGG
esp03;bar00-GGATTG
esp02;bar01-GGCAAG
esp02;bar02-GGCACG
esp01;bar04-GGGCAA
esp02;bar00-GGGTTG
esp00;bar02-GGTACC
esp01;bar04-GGTGGT
esp00;bar02-GGTTCG
esp03;bar00-GTAAAG
esp02;bar00-GTAAGT
esp01;bar01-GTACAA
esp02;bar02-GTGCAC
esp00;bar03-GTGCCA
esp02;bar00-GTGCTC
esp03;bar00-GTGCTG
esp11;bar08-GTGGGA
esp01;bar02-GTGTTC
esp02;bar00-GTTAAC
esp03;bar04-GTTTGC
esp02;bar00-TAACTT
esp02;bar00-TACACT
esp01;bar01-TACGCG
esp02;bar00-TAGCTG
esp00;bar02-TATGTG
esp01;bar01-TCAGAA
esp01;bar01-TCAGGC
esp02;bar00-TCATGC
esp02;bar00-TCATGT
esp11;bar08-TCCCAC
esp02;bar01-TCCCCT
esp02;bar00-TCGCAG
esp03;bar00-TCGCGC
esp03;bar02-TCGTGC
esp05;bar00-TCGTGG
esp01;bar01-TCTCAA
esp03;bar00-TCTTGT
esp01;bar01-TGACCT
esp06;bar02-TGAGAA
esp01;bar01-TGAGAT
esp02;bar00-TGAGGG
esp01;bar01-TGAGTG
esp04;bar00-TGATCC
esp02;bar01-TGCATG
esp02;bar00-TGCCTC
esp03;bar00-TGCTGG
esp02;bar01-TGGAAT
esp00;bar03-TGGCAC
esp01;bar01-TGGGAT
esp01;bar01-TGGGGG
esp01;bar01-TGGTTC
esp01;bar01-TGTACG
esp04;bar00-TGTGCT
esp06;bar02-TTCTCA
esp01;bar01-TTCTGA
esp01;bar01-TTGAGA
esp01;bar01-TTGAGC
esp01;bar04-TTGCCC
esp02;bar01-TTGCCT
esp01;bar01-TTGTAC
esp02;bar01-TTTCAG
esp01;bar01-AAAAGCG
esp01;bar01-AAAGCGT
esp02;bar00-AACGAAA
esp00;bar02-AACGTGC
esp01;bar01-AACTTAT
esp00;bar02-AAGCAAC
esp02;bar00-AAGCTAC
esp02;bar01-AAGGATC
esp01;bar01-AAGGGCT
esp01;bar01-AAGTCAG
esp02;bar00-AAGTCAT
esp00;bar02-AAGTGAT
esp02;bar00-AAGTTTC
esp00;bar02-AATCAGG
esp02;bar00-AATGATC
esp02;bar01-AATTAGC
esp02;bar00-ACAAGAT
esp01;bar01-ACAAGTA
esp02;bar00-ACAATCC
esp01;bar01-ACACACA
esp02;bar00-ACACACT
esp02;bar00-ACATTGC
esp00;bar03-ACCACCA
esp02;bar00-ACGACAA
esp02;bar00-ACGAGAC
esp02;bar00-ACGATTC
esp02;bar00-ACGCAAT
esp01;bar01-ACGCTTT
esp01;bar01-ACGTGCC
esp03;bar01-ACGTGTG
esp02;bar00-ACTAAAG
esp01;bar01-ACTTATC
esp02;bar00-ACTTTCG
esp03;bar00-AGCACAC
esp02;bar01-AGCATCA
esp01;bar01-AGCCCTT
esp03;bar00-AGCTGCA
esp03;bar02-AGGATAA
esp03;bar00-AGGATCA
esp01;bar01-AGGCAAA
esp02;bar02-AGTGGCA
esp02;bar00-AGTGTGC
esp02;bar00-AGTGTGT
esp03;bar00-ATAACAA
esp02;bar00-ATAAGGG
esp01;bar01-ATAAGTT
esp00;bar02-ATATGAG
esp00;bar02-ATCACTT
esp02;bar02-ATCCTGC
esp03;bar00-ATCGTGG
esp01;bar01-ATCTACC
esp02;bar00-ATCTTGT
esp02;bar00-ATGACTT
esp01;bar01-ATGAGGC
esp02;bar00-ATGATCC
esp00;bar02-ATGCACG
esp01;bar01-ATGCGTG
esp02;bar00-ATTGCGT
esp02;bar00-CAAACAA
esp00;bar02-CAAACAG
esp01;bar01-CAAATAA
esp01;bar01-CAACGTG
esp00;bar02-CAAGTGA
esp00;bar04-CAAGTGC
esp02;bar00-CAATCCA
esp02;bar00-CACAATC
esp03;bar00-CACACAC
esp04;bar00-CACACGA
esp03;bar01-CACACGT
esp01;bar03-CACACTC
esp02;bar00-CACGACG
esp02;bar00-CACGAGC
esp01;bar01-CACGCAT
esp01;bar01-CACGCGC
esp02;bar01-CACGGTA
esp01;bar01-CACGTTG
esp01;bar02-CACTTGC
esp01;bar02-CACTTGG
esp02;bar01-CAGGATC
esp02;bar00-CAGTAGC
esp01;bar01-CATGCAC
esp01;bar02-CCAAGTG
esp01;bar01-CCAATCA
esp03;bar00-CCACAAG
esp03;bar00-CCACGAT
esp04;bar01-CCCACGC
esp02;bar00-CCCTTAT
esp02;bar00-CCTCCCC
esp00;bar02-CCTGATT
esp01;bar01-CCTTATC
esp02;bar00-CGAAAGT
esp02;bar01-CGACAAG
esp02;bar00-CGAGCAA
esp02;bar00-CGCAATA
esp02;bar00-CGCAGCC
esp01;bar01-CGCCACG
esp01;bar01-CGCTTTT
esp02;bar00-CGTCGTG
esp02;bar03-CGTGAGA
esp00;bar02-CGTGCAT
esp02;bar00-CGTGCGC
esp01;bar01-CGTGGCG
esp07;bar03-CGTGGGA
esp01;bar02-CGTGTGA
esp02;bar00-CGTTACA
esp00;bar02-CTCATAT
esp03;bar01-CTCGTGC
esp01;bar01-CTGAAAG
esp01;bar01-CTGACTT
esp01;bar01-CTGCAGC
esp00;bar02-CTGCCAC
esp01;bar01-CTGTTCC
esp02;bar00-CTGTTTC
esp00;bar02-CTGTTTG
esp01;bar01-CTTATCA
esp02;bar01-CTTGTCG
esp03;bar00-CTTGTGG
esp02;bar00-CTTTAGT
esp01;bar01-CTTTCAG
esp02;bar00-GAAACAG
esp02;bar00-GAAACTT
esp02;bar00-GAATCGT
esp01;bar03-GAGTGTG
esp01;bar01-GATAAGG
esp01;bar01-GATAAGT
esp02;bar00-GATAATA
esp02;bar00-GATCATT
esp02;bar01-GATCCTG
esp02;bar01-GATCCTT
esp02;bar00-GATTGTG
esp01;bar02-GCAAACA
esp01;bar02-GCAAGTG
esp02;bar00-GCAATGT
esp02;bar00-GCACACT
esp03;bar01-GCACGAG
esp00;bar02-GCACGTT
esp00;bar04-GCACTTG
esp02;bar02-GCAGGAT
esp01;bar01-GCCTCAT
esp02;bar00-GCGATCC
esp02;bar00-GCGCACG
esp01;bar01-GCGCGTG
esp04;bar01-GCGTGGG
esp02;bar01-GCTAATT
esp02;bar00-GCTACTG
esp02;bar00-GCTCGTG
esp01;bar01-GCTGAAA
esp01;bar01-GCTGCAG
esp01;bar01-GCTTATA
esp01;bar01-GGAACAG
esp01;bar01-GGACGGA
esp02;bar00-GGATCAT
esp02;bar00-GGATCGC
esp02;bar00-GGATTGT
esp02;bar00-GGCAAAA
esp01;bar02-GGCAAAC
esp01;bar01-GGCACGT
esp01;bar01-GGCCACA
esp02;bar00-GGCTGCG
esp00;bar02-GGGAAAA
esp01;bar01-GGGCAAA
esp02;bar00-GGGGAGG
esp01;bar01-GGTAGAT
esp02;bar00-GTAGCTT
esp02;bar00-GTCTCGT
esp05;bar02-GTGAGAA
esp01;bar01-GTGCATG
esp00;bar02-GTGGCAG
esp11;bar06-GTGGGAA
esp03;bar00-GTGTGCT
esp03;bar00-GTGTGTG
esp02;bar00-GTTATAA
esp02;bar02-GTTCCCA
esp00;bar02-GTTGCTT
esp02;bar01-GTTTGCA
esp01;bar02-GTTTGCC
esp03;bar00-TAAAGTA
esp02;bar01-TACCGTG
esp01;bar01-TACTTGT
esp03;bar00-TACTTTA
esp01;bar01-TAGGGGA
esp01;bar01-TATAAGC
esp01;bar01-TATATGA
esp02;bar00-TATTATC
esp02;bar00-TATTGCG
esp01;bar02-TCACACG
esp00;bar02-TCACTTG
esp01;bar01-TCATATA
esp07;bar03-TCCCACG
esp01;bar01-TCCCCTA
esp01;bar01-TCCGTCC
esp02;bar00-TCGCGCA
esp04;bar00-TCGTGTG
esp02;bar03-TCTCACG
esp04;bar01-TGAGAAA
esp01;bar01-TGATAAG
esp03;bar00-TGATCCT
esp02;bar01-TGATGCT
esp01;bar01-TGATTGG
esp02;bar01-TGCAAAC
esp03;bar00-TGCAGCT
esp02;bar02-TGCCACT
esp02;bar00-TGCGCGA
esp02;bar00-TGGATTG
esp07;bar06-TGGGAAA
esp02;bar02-TGGGAAC
esp00;bar03-TGGTGGT
esp02;bar00-TGTAACG
esp01;bar01-TGTGGCC
esp01;bar01-TGTGTGT
esp01;bar02-TGTTTGC
esp02;bar00-TTATAAC
esp03;bar02-TTATCCT
esp01;bar01-TTATTTG
esp11;bar06-TTCCCAC
esp05;bar02-TTCTCAC
esp02;bar00-TTGCTCG
esp02;bar00-TTGTCGT
esp03;bar00-TTGTTAT
esp02;bar00-TTGTTTG
esp01;bar01-TTTCAGC
esp07;bar06-TTTCCCA
esp02;bar00-TTTCGTT
esp04;bar01-TTTCTCA
esp01;bar01-TTTGCCC
esp01;bar01-TTTGCCT
esp00;bar02-TTTTCCC
esp02;bar00-TTTTGCC
esp02;bar01-AAACACAC
esp02;bar00-AAACTAAA
esp01;bar01-AAAGTACA
esp02;bar00-AAATCGAG
esp03;bar01-AACAAGTG
esp01;bar01-AAGATTAA
esp01;bar01-AAGTGGCA
esp02;bar00-AATTGACA
esp01;bar01-ACAAGGAT
esp01;bar01-ACAATTAG
esp02;bar00-ACAATTGT
esp03;bar00-ACACACGA
esp00;bar02-ACACGTGT
esp02;bar02-ACAGCTGC
esp01;bar02-ACGTGCAG
esp02;bar01-ACGTGTGC
esp02;bar00-AGCACACG
esp02;bar00-AGCATCAT
esp01;bar01-AGCGTGTG
esp02;bar00-AGCTACAA
esp02;bar01-AGGATAAT
esp00;bar02-AGTGAAAT
esp02;bar00-ATAACAAT
esp02;bar00-ATAACACC
esp02;bar00-ATCATTGA
esp01;bar01-ATCCTGCA
esp01;bar01-ATCCTTGT
esp01;bar01-ATCGCGTG
esp02;bar00-ATGATGAC
esp02;bar00-ATGATGCT
esp02;bar00-ATGCAAAC
esp01;bar01-ATGGCAAG
esp02;bar01-ATTATCCT
esp01;bar01-ATTCCCAC
esp02;bar00-ATTGACAA
esp02;bar00-ATTGTTAT
esp02;bar00-ATTGTTTA
esp00;bar02-ATTTCACT
esp01;bar01-ATTTCTCA
esp01;bar01-CAATTAGC
esp02;bar00-CAATTATG
esp01;bar01-CACACGCT
esp02;bar00-CACACTAA
esp01;bar01-CACGATCC
esp01;bar01-CACGCGAT
esp03;bar01-CACTTGTT
esp02;bar00-CAGCACAC
esp01;bar03-CAGCAGCA
esp01;bar02-CAGGATAA
esp01;bar01-CAGGATCG
esp02;bar00-CATAATTG
esp02;bar02-CATGGGAA
esp00;bar02-CCACCCAA
esp01;bar01-CGATCCTG
esp01;bar01-CGATTTCA
esp01;bar01-CGCGCACA
esp00;bar02-CGCTTTCA
esp01;bar01-CGGATGGC
esp02;bar02-CGTGAGAA
esp00;bar02-CGTGCCAA
esp07;bar01-CGTGGGAA
esp01;bar01-CGTGTGAA
esp02;bar00-CGTGTGCT
esp01;bar01-CTAATTGT
esp02;bar00-CTCGATTT
esp01;bar02-CTGCACGT
esp01;bar01-CTTGCCAT
esp03;bar02-CTTTTATA
esp01;bar01-GAAATGCA
esp01;bar01-GAGTGGCA
esp01;bar01-GATTATAA
esp02;bar00-GCAATAAA
esp01;bar01-GCACACGC
esp02;bar01-GCACACGT
esp02;bar00-GCACGTGC
esp02;bar02-GCAGCTGT
esp01;bar01-GCCATCCG
esp01;bar01-GCGTGTGC
esp01;bar01-GCTAATTG
esp02;bar01-GCTGATAA
esp01;bar01-GCTGCGCC
esp01;bar01-GCTTTGAA
esp01;bar01-GGATCGTG
esp01;bar01-GGCGCAGC
esp02;bar00-GGTGTTAT
esp01;bar01-GGTTCCCA
esp02;bar00-GTCATCAT
esp03;bar01-GTGAGAAA
esp00;bar02-GTGCGCAC
esp07;bar04-GTGGGAAA
esp02;bar01-GTGGGAAC
esp01;bar01-GTGGGAAT
esp02;bar00-GTGTGCTG
esp02;bar01-GTGTGTTT
esp02;bar01-GTTCCCAC
esp02;bar00-GTTTGCAT
esp01;bar01-GTTTGCCA
esp02;bar00-TAAACAAT
esp02;bar00-TACAAATA
esp03;bar02-TATAAAAG
esp01;bar01-TATATAAA
esp02;bar00-TATTTGTA
esp02;bar00-TCAATGAT
esp02;bar02-TCGTGAGA
esp02;bar02-TCTCACGA
esp00;bar02-TGAAAGCG
esp01;bar01-TGAAATCG
esp01;bar01-TGAGAAAT
esp01;bar01-TGCAAACA
esp01;bar01-TGCAGGAT
esp01;bar01-TGCATTTC
esp01;bar01-TGCCACTC
esp01;bar01-TGCCACTT
esp01;bar03-TGCTGCTG
esp01;bar01-TGGCAAAC
esp01;bar01-TGGGAACC
esp01;bar01-TGTACTTT
esp02;bar00-TGTCAATT
esp03;bar00-TGTGAGAA
esp02;bar00-TGTGCACA
esp01;bar01-TGTGCGCG
esp04;bar05-TGTGGGAA
esp01;bar01-TGTGTCAA
esp01;bar01-TGTTTGCA
esp01;bar01-TTAATCTT
esp00;bar02-TTAATTAA
esp02;bar00-TTAGTGTG
esp01;bar01-TTATAATC
esp02;bar01-TTATCAGC
esp01;bar02-TTATCCTG
esp01;bar01-TTCAAAGC
esp01;bar01-TTCACACG
esp04;bar05-TTCCCACA
esp07;bar01-TTCCCACG
esp02;bar02-TTCCCATG
esp03;bar00-TTCTCACA
esp02;bar02-TTCTCACG
esp01;bar01-TTGACACA
esp00;bar02-TTGGCACG
esp00;bar02-TTGGGTGG
esp02;bar00-TTGTAGCT
esp02;bar00-TTGTCAAT
esp02;bar00-TTTAGTTT
esp01;bar01-TTTATATA
esp02;bar00-TTTATTGC
esp07;bar04-TTTCCCAC
esp03;bar01-TTTCTCAC
esp01;bar01-AAAAATTGT
esp00;bar02-AAATTGAAA
esp01;bar02-AACAGCTGC
esp02;bar00-AAGGATAAT
esp02;bar00-AAGGATCAG
esp01;bar01-ACAATTTTT
esp02;bar01-ACCGTGGGA
esp02;bar00-ATTATCAGC
esp02;bar00-ATTATCCTT
esp01;bar01-CAACAAGTG
esp01;bar01-CACGTGCAG
esp01;bar01-CACTTGTTG
esp02;bar00-CGAGAAAAA
esp01;bar01-CGTGAGAAA
esp05;bar00-CGTGGGAAA
esp01;bar01-CGTGTGCGC
esp02;bar00-CTGATCCTT
esp01;bar01-CTGCACGTG
esp01;bar02-CTTTCCCAC
esp02;bar00-GCACATGGC
esp01;bar01-GCAGCATCA
esp01;bar02-GCAGCTGTT
esp00;bar02-GCAGGATAA
esp02;bar00-GCCATGTGC
esp01;bar01-GCGCACACG
esp03;bar01-GCGTGGGAA
esp02;bar00-GCTGATAAT
esp01;bar02-GCTTTTATA
esp06;bar01-GTGGGAAAC
esp01;bar02-GTGGGAAAG
esp06;bar01-GTTTCCCAC
esp01;bar02-TATAAAAGC
esp02;bar01-TCCCACGGT
esp01;bar01-TGATGCTGC
esp02;bar04-TGTGGGAAA
esp00;bar02-TTATCCTGC
esp03;bar01-TTCCCACGC
esp00;bar02-TTTCAATTT
esp02;bar04-TTTCCCACA
esp05;bar00-TTTCCCACG
esp01;bar01-TTTCTCACG
esp02;bar00-TTTTTCTCG
esp01;bar01-AAAAAGGATC
esp02;bar00-ACAGCTGCAA
esp00;bar02-ACCACCACCA
esp02;bar00-AGTTTCCCAC
esp02;bar01-ATCGTGAGAA
esp02;bar00-ATCGTGGGAA
esp01;bar01-CACACCTGCC
esp01;bar01-CACGTGTGCA
esp01;bar01-CCTTTCCCAC
esp04;bar00-CGTGGGAAAC
esp01;bar01-CTATAAAAGC
esp01;bar01-CTGTGGGAAC
esp02;bar00-CTTGTGGGAA
esp00;bar02-CTTTCCCACA
esp00;bar02-GAGTGCACTC
esp01;bar01-GATCCTTTTT
esp02;bar00-GCGCCGGCGC
esp02;bar00-GCGTGGGAAA
esp01;bar01-GCTTTTATAG
esp01;bar01-GGCAGGTGTG
esp04;bar01-GTGGGAAACA
esp02;bar00-GTGGGAAACT
esp01;bar01-GTGGGAAAGG
esp01;bar03-GTGTGGGAAA
esp01;bar01-GTTCCCACAG
esp02;bar01-GTTTCCCACA
esp04;bar00-GTTTCCCACG
esp02;bar00-GTTTCTCACA
esp00;bar02-TAATGGGCAA
esp02;bar00-TACTTTACGA
esp02;bar00-TCGTAAAGTA
esp01;bar01-TGCACACGTG
esp01;bar01-TGCGTGGGAA
esp00;bar02-TGGTGGTGGT
esp02;bar00-TGTGAGAAAC
esp02;bar01-TGTGGGAAAC
esp00;bar02-TGTGGGAAAG
esp04;bar01-TGTTTCCCAC
esp02;bar00-TTCCCACAAG
esp02;bar00-TTCCCACGAT
esp01;bar01-TTCCCACGCA
esp02;bar01-TTCTCACGAT
esp02;bar00-TTGCAGCTGT
esp00;bar02-TTGCCCATTA
esp01;bar03-TTTCCCACAC
esp02;bar00-TTTCCCACGC
esp00;bar03-AGTGTGGGAAA
esp03;bar00-CGTGGGAAACA
esp03;bar00-GTGGGAAACAC
esp03;bar00-GTGTTTCCCAC
esp03;bar00-TGTTTCCCACG
esp00;bar03-TTTCCCACACT
esp02;bar00-ACCGTGGGAAAC
esp02;bar00-CGTGGGAAACAC
esp01;bar01-GTGTGGGAAACA
esp02;bar00-GTGTTTCCCACG
esp02;bar00-GTTTCCCACGGT
esp01;bar01-TGTTTCCCACAC
esp00;bar02-CGAGTGTGGGAAA
esp00;bar02-TTTCCCACACTCG
esp02;bar00-GTCGTGTGTTTCCCAC
esp02;bar00-GTGGGAAACACACGAC
Contact information
Please feel free to contact Dr. Thomas Brody at brodyt@ninds.nih.gov or Dr. Ward Odenwald at odenwaldw@ninds.nih.gov if you have any questions about EvoPrinter or its applications.

Discover multispecies conserved sequences using EvoPrinter.


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