cis-Decoder: cDT-Libraries


Drosophila Neuroblast cDT-library

    A cDT, is a short sequence element of 6 bp or greater that is a perfect match to sequences within CSBs that are present in two or more enhancers. A cDT-library represents a collection of cDTs that are shared by the various enhancers examined.

    All libraries were generated from readouts of the CSB-aligner. Making enhancer-type specific libraries requires two different CSB-libraries generated from functionally different enhancers, a library from the tissue of interest (e.g. neural), and a second library that serves as an 'out-group' (e.g. mesodermal). For the generation of a neural cDT-library, neural CSBs in both forward and reverse directions were copy/pasted into both upper and lower windows of CSB-aligner. The resulting cDTs from this alignment are listed in the 'Result of CSB alignment table' of the CSB-aligner output, in the column titled 'Motif.' Since this cDT list contains multiple copies of different cDTs, the extra copies are removed using the Java applet Puzzamatic 1.0, a freeware created by Ron Surratt. The cDT list that contains all unique cDTs is then alphabetized and sorted by size also using Puzzamatic 1.0. The cDTs, constituting a raw neural cDT-library, were then copy/pasted into a Microsoft Word document. A second CSB-alignment is then performed with the neural CSBs in the top window of CSB-aligner, and mesodermal CSBs in the lower window. The cDTs from this alignment were freed of extra copies as above. These cDTs constituted an unedited common neural/mesodermal cDT-library. The unedited neural and common cDT-libraries are combined and cDTs common to the two libraries (present in the first and second alignments) are both removed using the JavaScript program cDT-cleaner, thus leaving only the neural-specific sequences.

    Frequency of sequence matches for each cDT was assessed using cDT-cataloger and cDT-counter. For example the cDT AAAGTT is annotated nb04;pns02;esp01;s05-AAAGTT to indicate that there were four hits on a Drosophila NB CSB library and two hits on a Drosophila PNS library, one hit on a Drosophila E(spl) CSB library and five hits on a Drosophila segmentation library.

Drosophila Neuroblast cDT-library

nb04;pns02;esp01;s05-AAAGTT
nb02;pns01;esp01;s05-AACGGA
nb02;pns00;esp01;s02-AACTCG
nb04;pns02;esp01;s05-AACTTT
nb02;pns01;esp00;s01-AAGAGC
nb02;pns03;esp01;s01-AAGATC
nb02;pns04;esp00;s00-AAGCGC
nb02;pns00;esp02;s03-AAGCTA
nb03;pns02;esp00;s03-AAGTCG
nb03;pns00;esp01;s02-AATCCC
nb02;pns00;esp02;s02-ACAGAA
nb04;pns08;esp10;s01-ACCACC
nb03;pns02;esp01;s00-ACCCCA
nb02;pns00;esp01;s00-ACCCCC
nb02;pns01;esp00;s04-ACCTGA
nb03;pns01;esp01;s03-ACCTTG
nb02;pns01;esp01;s00-ACGCTG
nb02;pns00;esp00;s01-ACTCAC
nb02;pns00;esp00;s00-AGACCT
nb03;pns00;esp00;s01-AGATAT
nb02;pns03;esp01;s00-AGCCAC
nb03;pns00;esp00;s03-AGCCAG
nb02;pns00;esp00;s00-AGCCCC
nb02;pns03;esp02;s02-AGCGTG
nb03;pns00;esp01;s04-AGCTTA
nb02;pns00;esp00;s00-AGGTCT
nb02;pns03;esp01;s03-AGGTGA
nb02;pns02;esp00;s00-AGTAAC
nb03;pns00;esp00;s01-ATATCT
nb02;pns00;esp00;s00-ATCGCC
nb03;pns01;esp06;s00-ATCGTG
nb03;pns00;esp00;s00-ATGGGC
nb02;pns03;esp03;s02-CAACCC
nb03;pns01;esp01;s03-CAAGGT
nb02;pns00;esp02;s02-CAAGTA
nb02;pns00;esp01;s00-CAATAC
nb03;pns05;esp06;s00-CACCAC
nb02;pns00;esp01;s01-CACCAG
nb03;pns02;esp00;s02-CACCCC
nb04;pns00;esp00;s02-CACCCG
nb02;pns01;esp05;s04-CACGAG
nb03;pns01;esp06;s00-CACGAT
nb03;pns02;esp01;s05-CACGCC
nb02;pns03;esp02;s02-CACGCT
nb02;pns03;esp02;s01-CACGTC
nb03;pns01;esp01;s01-CACTCA
nb03;pns02;esp02;s01-CAGCAG
nb02;pns01;esp01;s00-CAGCGT
nb02;pns01;esp07;s03-CCACGA
nb03;pns01;esp11;s03-CCCACG
nb02;pns00;esp00;s00-CCCATC
nb03;pns03;esp01;s02-CCCTAA
nb02;pns01;esp01;s00-CCGTTA
nb02;pns01;esp02;s00-CGACGC
nb03;pns02;esp00;s03-CGACTT
nb02;pns00;esp01;s02-CGAGTT
nb04;pns00;esp00;s02-CGGGTG
nb05;pns06;esp03;s00-CGTGCC
nb03;pns01;esp11;s03-CGTGGG
nb02;pns01;esp00;s02-CTAAAC
nb04;pns00;esp00;s02-CTAAGC
nb02;pns01;esp05;s04-CTCGTG
nb03;pns02;esp02;s01-CTGCTG
nb03;pns00;esp00;s03-CTGGCT
nb02;pns00;esp01;s01-CTGGTG
nb03;pns00;esp02;s01-CTTCAA
nb02;pns00;esp01;s00-GAAGCA
nb02;pns01;esp03;s01-GAAGCC
nb02;pns00;esp01;s01-GAAGTA
nb04;pns02;esp00;s00-GAATCC
nb02;pns03;esp02;s01-GACGTG
nb02;pns00;esp00;s01-GACTAA
nb02;pns00;esp02;s00-GAGCAC
nb02;pns02;esp01;s00-GAGCCA
nb03;pns00;esp01;s00-GAGTGC
nb02;pns01;esp00;s03-GATCAC
nb02;pns03;esp01;s01-GATCTT
nb02;pns00;esp00;s00-GATGGG
nb02;pns00;esp01;s00-GATTCA
nb03;pns03;esp03;s03-GCAAAC
nb02;pns01;esp01;s01-GCACCC
nb03;pns00;esp03;s00-GCACGA
nb03;pns00;esp01;s00-GCACTC
nb02;pns02;esp03;s01-GCAGGA
nb02;pns04;esp06;s02-GCATGC
nb02;pns01;esp01;s00-GCCAGA 
nb03;pns00;esp00;s00-GCCCAT
nb02;pns04;esp00;s00-GCGCTT
nb02;pns01;esp02;s00-GCGTCG
nb02;pns01;esp00;s01-GCTCTT
nb04;pns00;esp00;s02-GCTTAG
nb02;pns03;esp01;s01-GCTTCC
nb02;pns03;esp01;s01-GGAAGC
nb02;pns00;esp01;s00-GGAGCA
nb05;pns01;esp04;s06-GGATCA
nb04;pns02;esp00;s00-GGATTC
nb05;pns06;esp03;s00-GGCACG
nb02;pns00;esp00;s00-GGCGAT
nb03;pns02;esp01;s05-GGCGTG
nb04;pns03;esp00;s02-GGCTAA
nb02;pns01;esp00;s01-GGCTCA
nb02;pns01;esp03;s01-GGCTTC
nb03;pns00;esp01;s02-GGGATT
nb03;pns00;esp00;s00-GGGGCA
nb02;pns00;esp00;s00-GGGGCT
nb02;pns00;esp01;s00-GGGGGT
nb03;pns02;esp00;s02-GGGGTG
nb02;pns01;esp01;s01-GGGTGC
nb02;pns03;esp03;s02-GGGTTG
nb02;pns05;esp00;s06-GGTAAA
nb04;pns08;esp10;s01-GGTGGT
nb02;pns00;esp01;s00-GTATTG
nb02;pns00;esp00;s00-GTCGAC
nb03;pns00;esp02;s02-GTCGCA
nb02;pns00;esp00;s01-GTGAGT
nb02;pns01;esp00;s03-GTGATC
nb02;pns00;esp02;s00-GTGCTC
nb02;pns03;esp01;s00-GTGGCT
nb03;pns02;esp12;s01-GTGGGA
nb03;pns05;esp06;s00-GTGGTG
nb02;pns02;esp00;s00-GTTACT
nb02;pns01;esp00;s02-GTTTAG
nb02;pns03;esp03;s03-GTTTGC
nb02;pns01;esp01;s00-TAACGG
nb03;pns00;esp01;s04-TAAGCT
nb02;pns01;esp00;s04-TACCTA
nb02;pns00;esp01;s01-TACTTC
nb02;pns00;esp02;s02-TACTTG
nb02;pns00;esp02;s03-TAGCTT
nb02;pns01;esp00;s04-TAGGTA
nb02;pns03;esp01;s03-TCACCT
nb02;pns01;esp00;s04-TCAGGT
nb03;pns02;esp12;s01-TCCCAC
nb02;pns01;esp01;s05-TCCGTT
nb02;pns02;esp03;s01-TCCTGC
nb03;pns00;esp03;s00-TCGTGC
nb02;pns01;esp07;s03-TCGTGG
nb02;pns00;esp01;s04-TCTCAA
nb02;pns01;esp01;s00-TCTGGC
nb02;pns00;esp01;s00-TGAATC
nb02;pns00;esp01;s01-TGAGCA
nb02;pns01;esp00;s01-TGAGCC
nb03;pns01;esp01;s01-TGAGTG
nb05;pns01;esp04;s06-TGATCC
nb03;pns00;esp00;s00-TGCCCC
nb03;pns00;esp02;s02-TGCGAC
nb02;pns00;esp01;s01-TGCTCA
nb02;pns00;esp01;s00-TGCTCC
nb02;pns00;esp01;s00-TGCTTC
nb02;pns02;esp01;s00-TGGCTC
nb03;pns02;esp01;s00-TGGGGT
nb04;pns03;esp00;s02-TTAGCC
nb02;pns03;esp01;s02-TTAGGG
nb03;pns00;esp00;s01-TTAGTC
nb02;pns00;esp02;s02-TTCTGT
nb03;pns00;esp02;s01-TTGAAG
nb02;pns00;esp01;s04-TTGAGA
nb02;pns05;esp00;s06-TTTACC
nb07;pns01;esp00;s05-AAAAAAA
nb02;pns03;esp02;s05-AAAAACT
nb02;pns00;esp00;s01-AAAAGCC
nb03;pns00;esp00;s01-AAAATGC
nb02;pns01;esp02;s01-AAACAAG
nb02;pns01;esp00;s02-AAACGGA
nb02;pns02;esp01;s13-AAAGGAT
nb02;pns00;esp00;s01-AAAGTTG
nb03;pns01;esp00;s01-AAATATG
nb02;pns02;esp01;s00-AACAAGA
nb02;pns03;esp00;s00-AACACGC
nb02;pns00;esp00;s00-AACATAA
nb03;pns01;esp00;s00-AACTAAT
nb02;pns01;esp00;s00-AACTTTG
nb02;pns01;esp00;s00-AAGTGCT
nb02;pns00;esp00;s00-AAGTTGA
nb02;pns00;esp01;s00-AATGTGT
nb02;pns04;esp03;s02-AATTAGC
nb02;pns01;esp00;s02-AATTAGG
nb02;pns00;esp00;s01-AATTCTA
nb02;pns01;esp01;s01-AATTGCT
nb03;pns02;esp00;s01-AATTTAG
nb03;pns00;esp02;s02-ACAAATA
nb02;pns01;esp01;s01-ACAATAT
nb02;pns00;esp01;s00-ACACATT
nb03;pns00;esp00;s00-ACACGTA
nb02;pns03;esp00;s01-ACAGGTA
nb02;pns00;esp00;s00-ACATGTC
nb02;pns01;esp00;s00-ACCACCC
nb02;pns01;esp00;s01-ACCTTGA
nb02;pns02;esp00;s00-ACGTGCC
nb02;pns00;esp00;s00-ACGTGTC
nb02;pns00;esp00;s01-ACTTCAT
nb02;pns01;esp02;s01-ACTTCCT
nb02;pns00;esp01;s00-AGATTTG
nb02;pns01;esp01;s01-AGCAATT
nb02;pns01;esp00;s00-AGCACTT
nb02;pns00;esp00;s00-AGCCAGA
nb03;pns08;esp02;s00-AGCTGCA
nb02;pns00;esp00;s00-AGCTTAG
nb02;pns01;esp02;s01-AGGAAGT
nb02;pns00;esp00;s00-AGGCTAA
nb02;pns02;esp00;s04-AGGTAAA
nb02;pns03;esp02;s05-AGTTTTT
nb02;pns00;esp00;s01-ATAGAAA
nb02;pns01;esp01;s01-ATATTGT
nb03;pns01;esp00;s02-ATATTTG
nb02;pns00;esp00;s02-ATCATCC
nb03;pns02;esp01;s13-ATCCTTT
nb02;pns00;esp00;s00-ATCGTGC
nb02;pns00;esp00;s01-ATGAAGT
nb03;pns00;esp00;s01-ATGCGGC
nb02;pns01;esp01;s00-ATGCGTG
nb02;pns03;esp00;s02-ATTAGCA
nb02;pns02;esp00;s00-ATTAGCC
nb03;pns01;esp00;s00-ATTAGTT
nb02;pns01;esp00;s00-CAAAGTT
nb03;pns00;esp01;s04-CAAATAA
nb03;pns01;esp00;s02-CAAATAT
nb02;pns00;esp01;s00-CAAATCT
nb02;pns01;esp00;s00-CAACTAA
nb02;pns00;esp00;s01-CAACTTT
nb02;pns00;esp00;s00-CAAGAGC
nb03;pns02;esp00;s00-CAAGTGC
nb02;pns05;esp04;s00-CACCACC
nb02;pns01;esp00;s00-CACCCCA
nb02;pns00;esp00;s00-CACCCGC
nb02;pns00;esp00;s00-CACCCGG
nb02;pns01;esp01;s00-CACGCAT
nb02;pns00;esp00;s00-CACGTTC
nb02;pns00;esp00;s00-CACTCAG
nb02;pns00;esp01;s01-CACTTAG
nb03;pns00;esp00;s00-CACTTCA
nb03;pns00;esp00;s01-CAGCTAA
nb03;pns00;esp01;s00-CAGGATA
nb03;pns01;esp00;s01-CATATTT
nb02;pns00;esp01;s00-CATCAGC
nb02;pns00;esp00;s02-CATTAGC
nb02;pns01;esp02;s00-CCAAAAG
nb02;pns00;esp00;s01-CCAAATA
nb02;pns00;esp00;s00-CCACAGC
nb02;pns02;esp00;s00-CCACCCC
nb02;pns00;esp00;s01-CCACGGG
nb02;pns00;esp00;s00-CCACTGA
nb03;pns01;esp00;s00-CCATGAA
nb02;pns00;esp00;s01-CCCGTGG
nb02;pns00;esp00;s00-CCGGGTG
nb02;pns01;esp00;s02-CCTAATT
nb02;pns00;esp00;s00-CGATCGC
nb02;pns00;esp00;s00-CGGGTGC
nb04;pns02;esp01;s00-CGTGCCA
nb02;pns01;esp08;s01-CGTGGGA
nb02;pns00;esp00;s01-CGTTCAA
nb03;pns02;esp00;s01-CTAAATT
nb02;pns00;esp00;s00-CTAAGCT
nb02;pns00;esp01;s01-CTAAGTG
nb02;pns00;esp00;s01-CTAATGC
nb02;pns00;esp00;s01-CTACTTC
nb02;pns00;esp00;s00-CTGAGTG
nb02;pns01;esp00;s00-CTGCCGC
nb02;pns00;esp00;s00-CTTAGTC
nb02;pns00;esp00;s02-CTTGTGC
nb02;pns01;esp02;s01-CTTGTTT
nb02;pns01;esp02;s00-CTTTTGG
nb02;pns00;esp00;s00-GAACGTG 
nb02;pns00;esp00;s01-GAAGTAG
nb03;pns00;esp00;s00-GAATCCC
nb02;pns00;esp00;s00-GACACGT
nb02;pns00;esp00;s00-GACATGT
nb02;pns00;esp00;s00-GACTAAG
nb03;pns00;esp00;s00-GATCGGC
nb03;pns00;esp01;s03-GATTTAC
nb02;pns00;esp00;s00-GCAATGC
nb02;pns00;esp00;s02-GCACAAG
nb02;pns00;esp00;s00-GCACCCG
nb02;pns00;esp00;s00-GCACGAT
nb03;pns02;esp00;s00-GCACTTG
nb02;pns00;esp00;s01-GCATTAG
nb02;pns00;esp00;s00-GCATTGC
nb03;pns00;esp00;s01-GCATTTT
nb02;pns02;esp00;s00-GCCACAC
nb03;pns00;esp00;s00-GCCGATC
nb03;pns00;esp00;s01-GCCGCAT
nb02;pns00;esp00;s00-GCGATCG
nb02;pns01;esp00;s00-GCGGCAG
nb02;pns00;esp00;s00-GCGGGTG
nb02;pns03;esp00;s00-GCGTGTT
nb02;pns00;esp00;s02-GCTAATG
nb02;pns04;esp03;s02-GCTAATT
nb02;pns00;esp00;s00-GCTCTTG
nb02;pns00;esp01;s00-GCTGATG
nb02;pns06;esp02;s02-GCTGCAA
nb02;pns00;esp00;s00-GCTGTGG
nb02;pns01;esp00;s02-GGAAAAA
nb02;pns00;esp00;s02-GGAGTAA
nb02;pns01;esp00;s02-GGATCAA
nb02;pns00;esp00;s02-GGATGAT
nb02;pns02;esp02;s01-GGCAAAA
nb03;pns02;esp00;s00-GGCACGT
nb02;pns02;esp00;s00-GGCTAAT
nb02;pns00;esp00;s01-GGCTTTT
nb03;pns00;esp00;s00-GGGATTC
nb03;pns02;esp00;s00-GGGGTGG
nb02;pns01;esp00;s00-GGGTGGT
nb02;pns05;esp04;s00-GGTGGTG
nb03;pns00;esp01;s03-GTAAATC
nb02;pns00;esp00;s00-GTAGGTA
nb02;pns00;esp00;s00-GTCGGAA
nb02;pns01;esp11;s01-GTGGGAA
nb02;pns01;esp00;s00-GTGTAAA
nb02;pns02;esp00;s00-GTGTGGC
nb03;pns01;esp04;s00-GTTCCCA
nb03;pns01;esp01;s01-TAAAATA
nb02;pns00;esp00;s00-TACCTAC
nb02;pns03;esp00;s01-TACCTGT
nb03;pns00;esp00;s00-TACGTGT
nb02;pns00;esp00;s01-TAGAATT
nb02;pns00;esp00;s00-TATAGAA
nb03;pns00;esp01;s00-TATCCTG
nb03;pns01;esp00;s00-TATTGAA
nb02;pns00;esp00;s01-TATTTGG
nb03;pns00;esp02;s02-TATTTGT
nb03;pns01;esp01;s01-TATTTTA
nb02;pns00;esp00;s00-TCAACTT
nb02;pns01;esp00;s01-TCAAGGT
nb03;pns03;esp00;s01-TCAATAA
nb03;pns02;esp03;s01-TCACACA
nb02;pns00;esp00;s00-TCAGTGG
nb02;pns01;esp08;s01-TCCCACG
nb02;pns01;esp00;s02-TCCGTTT
nb02;pns00;esp00;s00-TCTGGCT
nb02;pns02;esp01;s00-TCTTGTT
nb03;pns00;esp00;s00-TGAAGTG
nb02;pns00;esp01;s01-TGATCCA
nb03;pns08;esp02;s00-TGCAGCT
nb02;pns03;esp00;s02-TGCTAAT
nb02;pns00;esp01;s01-TGGATCA
nb04;pns02;esp01;s00-TGGCACG
nb03;pns01;esp04;s00-TGGGAAC
nb02;pns01;esp00;s00-TGGGGTG
nb02;pns02;esp03;s01-TGTGTGA
nb02;pns00;esp00;s02-TTACTCC
nb02;pns01;esp00;s01-TTAGCAA
nb02;pns00;esp00;s00-TTAGCCT
nb03;pns00;esp00;s01-TTAGCTG
nb02;pns01;esp00;s00-TTAGTTG
nb02;pns00;esp00;s00-TTATGTT
nb03;pns03;esp00;s01-TTATTGA
nb03;pns00;esp01;s04-TTATTTG
nb03;pns01;esp00;s00-TTCAATA
nb02;pns01;esp00;s00-TTCATGG
nb02;pns01;esp11;s01-TTCCCAC
nb02;pns00;esp00;s00-TTCCGAC
nb02;pns00;esp00;s00-TTCTATA
nb02;pns00;esp00;s01-TTGAACG
nb02;pns01;esp00;s02-TTGATCC
nb02;pns06;esp02;s02-TTGCAGC
nb02;pns01;esp00;s01-TTGCTAA
nb02;pns01;esp00;s00-TTTACAC
nb02;pns02;esp00;s04-TTTACCT
nb02;pns00;esp00;s01-TTTCTAT
nb02;pns02;esp02;s01-TTTTGCC
nb02;pns01;esp00;s02-TTTTTCC
nb07;pns01;esp00;s05-TTTTTTT
nb04;pns00;esp00;s00-AAAAAAAA
nb03;pns00;esp00;s00-AAAAATGA
nb02;pns01;esp01;s01-AAAAATTG
nb02;pns01;esp00;s01-AAAACAAC
nb02;pns00;esp00;s00-AAAACAAG
nb02;pns00;esp00;s01-AAAATATG
nb02;pns00;esp00;s01-AAAATGCA
nb03;pns00;esp00;s01-AAACAAAT
nb02;pns01;esp00;s01-AAACCGCA
nb02;pns01;esp01;s00-AAAGGATC
nb02;pns00;esp00;s01-AAATATGA
nb02;pns01;esp00;s01-AAATCAAA
nb03;pns00;esp00;s00-AAATTAGT
nb02;pns00;esp00;s00-AAATTCTA
nb02;pns00;esp00;s00-AACACGTA
nb04;pns01;esp01;s00-AACAGCTG
nb02;pns00;esp00;s00-AAGATATA
nb02;pns00;esp00;s00-AAGATCTT
nb03;pns00;esp00;s00-AAGTGCAA
nb03;pns02;esp00;s01-AATCAAAA
nb02;pns00;esp00;s00-AATTACCG
nb02;pns00;esp00;s01-AATTATAA
nb02;pns00;esp00;s02-ACAATGAA
nb02;pns00;esp00;s00-ACACGCCG
nb02;pns00;esp00;s00-ACAGCTGT
nb02;pns00;esp00;s00-ACAGGATA
nb03;pns00;esp00;s00-ACTAATTT
nb02;pns01;esp00;s00-ACTTTCAC
nb02;pns00;esp00;s01-ACTTTGAA
nb03;pns00;esp00;s01-AGAAATCA
nb02;pns01;esp00;s00-AGCTGACA
nb02;pns00;esp00;s00-AGGGGAAA
nb03;pns02;esp00;s01-AGTGTCAA
nb03;pns01;esp00;s00-AGTTATTA
nb02;pns00;esp00;s00-AGTTGAAG
nb02;pns00;esp00;s00-ATCAATTA
nb02;pns00;esp00;s00-ATCATCCC
nb02;pns00;esp00;s01-ATGCGGCA
nb02;pns01;esp00;s00-ATGTGTGA
nb02;pns00;esp00;s01-ATTAGCTG
nb02;pns00;esp00;s00-ATTCAAAC
nb03;pns00;esp00;s01-ATTTGTTT
nb02;pns00;esp00;s03-CAAATAAA
nb03;pns01;esp00;s00-CAAATTAG
nb02;pns00;esp01;s00-CAAGGTAA
nb02;pns01;esp00;s00-CAAGTGCA
nb02;pns00;esp01;s03-CAATAAAA
nb02;pns01;esp01;s01-CAATTTTT
nb02;pns00;esp00;s00-CACCAAAA
nb02;pns00;esp00;s00-CACGTTCA
nb02;pns01;esp00;s00-CACTTGCA
nb02;pns07;esp02;s00-CAGCTGCA
nb02;pns00;esp00;s01-CAGCTAAT
nb04;pns01;esp01;s00-CAGCTGTT
nb02;pns00;esp00;s00-CAGGTTTC
nb02;pns00;esp00;s01-CATATTTT
nb02;pns01;esp00;s00-CCCATGAA
nb02;pns00;esp00;s00-CGGCGTGT
nb02;pns00;esp00;s00-CGGTAATT
nb02;pns00;esp00;s00-CGTGATTC
nb02;pns02;esp00;s00-CGTGCCAC
nb02;pns00;esp00;s00-CGTGTTGA
nb03;pns01;esp00;s00-CTAATTTG
nb02;pns00;esp00;s00-CTGGCAAC
nb02;pns00;esp00;s00-CTTCAACT
nb02;pns01;esp00;s00-CTTGTTGC
nb02;pns00;esp00;s00-CTTGTTTT
nb02;pns00;esp00;s00-GAAACCTG
nb02;pns00;esp00;s00-GAATCACG
nb02;pns01;esp01;s00-GATCCTTT
nb02;pns00;esp01;s01-GATTTACA
nb02;pns01;esp00;s00-GCAACAAG
nb02;pns00;esp00;s00-GCATGAAA
nb02;pns00;esp00;s00-GGCATCAA
nb03;pns01;esp00;s00-GGCGCCAA
nb02;pns00;esp00;s00-GGGATGAT
nb02;pns01;esp00;s00-GTGAAAGT
nb02;pns02;esp00;s00-GTGGCACG
nb02;pns00;esp00;s00-GTTGCCAG
nb02;pns01;esp00;s01-GTTGTTTT
nb02;pns00;esp00;s00-GTTTGAAT
nb03;pns01;esp00;s00-TAATAACT
nb02;pns00;esp00;s00-TAATTGAT
nb02;pns00;esp00;s00-TACGTGTT
nb02;pns00;esp00;s00-TAGAAACA
nb02;pns00;esp00;s00-TAGAATTT
nb03;pns00;esp00;s00-TATATCTT
nb03;pns00;esp00;s00-TATCCTGT
nb02;pns00;esp01;s00-TATGAAAA
nb02;pns00;esp00;s01-TATTTGAA
nb02;pns00;esp00;s00-TCAACACG
nb02;pns01;esp00;s00-TCACACAT
nb02;pns00;esp00;s00-TCACGTGA
nb02;pns00;esp00;s01-TCATATTT
nb03;pns00;esp00;s00-TCATTTTT
nb02;pns00;esp00;s00-TCCGTTTT
nb02;pns00;esp00;s00-TGAACGTG
nb03;pns00;esp00;s01-TGATTTCT
nb03;pns01;esp00;s00-TGCAAGTG
nb02;pns01;esp00;s00-TGCACTTG
nb02;pns07;esp02;s00-TGCAGCTG
nb02;pns00;esp00;s01-TGCATTTT
nb02;pns00;esp00;s01-TGCCGCAT
nb02;pns01;esp00;s01-TGCGGTTT
nb02;pns00;esp01;s01-TGTAAATC
nb02;pns01;esp00;s00-TGTCAGCT
nb02;pns00;esp00;s00-TGTTTCTA
nb02;pns00;esp00;s01-TTAAAAAA
nb02;pns00;esp01;s00-TTACCTTG
nb02;pns00;esp00;s01-TTATAATT
nb02;pns00;esp00;s01-TTCAAAGT
nb02;pns00;esp00;s01-TTCAAATA
nb02;pns01;esp00;s00-TTCATGGG
nb02;pns00;esp00;s02-TTCATTGT
nb02;pns00;esp00;s01-TTCTAAAA
nb02;pns02;esp00;s01-TTGACACT
nb02;pns00;esp00;s00-TTGATGCC
nb03;pns00;esp00;s00-TTGCACTT
nb03;pns01;esp00;s00-TTGGCGCC
nb02;pns00;esp00;s03-TTTATTTG
nb03;pns00;esp00;s00-TTTCATGC
nb03;pns00;esp00;s00-TTTCCCCT
nb03;pns01;esp00;s01-TTTGATTT
nb02;pns00;esp00;s01-TTTTAGAA
nb03;pns00;esp01;s03-TTTTATTG
nb03;pns00;esp01;s00-TTTTCATA
nb03;pns02;esp00;s01-TTTTGATT
nb02;pns00;esp00;s00-TTTTGGTG
nb04;pns00;esp00;s00-TTTTTTTT
nb02;pns00;esp00;s00-AAATCAACA
nb02;pns00;esp00;s00-AAATTAGTT
nb02;pns00;esp00;s00-AACATAAAC
nb02;pns00;esp00;s00-AACTAATTT
nb02;pns00;esp00;s00-AAGATTAAT
nb02;pns00;esp00;s00-AATCAAAAA
nb02;pns00;esp00;s00-AATCAAAGT
nb02;pns00;esp00;s00-AATCAATTA
nb02;pns00;esp00;s00-ACGTGACAA
nb02;pns00;esp00;s00-ACTAATTTG
nb02;pns00;esp00;s00-ACTTTGATT
nb02;pns00;esp00;s00-ATTAATCTT
nb02;pns00;esp00;s00-CAAATTAGT
nb02;pns02;esp00;s00-CAGCAGCTG
nb02;pns02;esp00;s00-CAGCTGCTG
nb02;pns00;esp00;s00-CAGTTATTA
nb02;pns00;esp00;s00-CCATAAATC
nb02;pns00;esp00;s00-GAAGTGCAA
nb02;pns00;esp00;s00-GATTTATGG
nb02;pns00;esp00;s00-GTATTTTTA
nb02;pns00;esp00;s00-GTGACAAAA
nb02;pns00;esp00;s00-GTTTATGTT
nb02;pns00;esp00;s00-TAAAAATAC
nb02;pns00;esp00;s00-TAATAACTG
nb02;pns01;esp00;s01-TAATTAAAA
nb03;pns00;esp00;s00-TAATTCAAA
nb02;pns00;esp00;s00-TAATTGATT
nb02;pns01;esp01;s00-TCATGGGAA
nb02;pns00;esp00;s01-TGGGAAAAA
nb02;pns02;esp00;s00-TGTCAATAA
nb02;pns00;esp00;s00-TGTTGATTT
nb02;pns02;esp00;s00-TTATTGACA
nb02;pns01;esp01;s00-TTCCCATGA
nb02;pns00;esp00;s00-TTGCACTTC
nb02;pns00;esp00;s00-TTGTCACGT
nb03;pns00;esp00;s00-TTTGAATTA
nb02;pns01;esp00;s01-TTTTAATTA
nb02;pns00;esp00;s00-TTTTGTCAC
nb02;pns00;esp00;s01-TTTTTCCCA
nb02;pns00;esp00;s00-TTTTTGATT
nb02;pns00;esp00;s00-AATTTATGCG
nb02;pns00;esp00;s00-ACACGTACCA
nb02;pns00;esp00;s00-ATTCAATTTA
nb02;pns00;esp00;s00-CATTTTGGCA
nb02;pns00;esp00;s00-CGCATAAATT
nb02;pns00;esp00;s00-GCAATCAAAA
nb02;pns00;esp00;s00-TAAATTGAAT
nb02;pns00;esp00;s00-TCGTGCCACA
nb02;pns00;esp00;s00-TGCCAAAATG
nb02;pns00;esp00;s00-TGGTACGTGT
nb02;pns00;esp00;s00-TGTGGCACGA
nb02;pns00;esp00;s00-TTTTGATTGC
nb02;pns00;esp00;s00-AAACAAATTAG
nb02;pns00;esp00;s00-CTAATTTGTTT
nb02;pns00;esp00;s00-GCAATTTTTTA
nb02;pns00;esp00;s00-TAAAAAATTGC
nb02;pns00;esp00;s00-CTATAATTCAAA
nb02;pns00;esp00;s00-TTTGAATTATAG
Contact information
Please feel free to contact Dr. Thomas Brody at brodyt@ninds.nih.gov or Dr. Ward Odenwald at odenwaldw@ninds.nih.gov if you have any questions about EvoPrinter or its applications.

Discover multispecies conserved sequences using EvoPrinter.


Return to cis-Decoder home.