Anopheles gambiae hunchback Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except Culex pipiens or Aedes aegypti


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
ccgaagataacaaacaaaatataataaatacatatctttgcattaatttttctcattttgatttttgaaactcat
taaatatgacgactggaaattcatgtcactttggtggattccgactatcgtgtgatagagcatgtaatgaaatta
taaatgaaatacagactctgataatttagatgttcaatcgattgacaattttcatcaagaattcgtgttcactta
tgtcttgtattttcagtgtattaaggatttttcaaatatttgatcgttaattattcatacggtgaacatttTTTT
TATTTTATTATcacgatTTAGTtATTTTTGCTTtTAAAcgttatagaaagcattgatagtatggtttgcgtgttc
GTTAAAACAATCTgacAAtattgaacgcgTTACAGgAAAGAAAGcgatgaaattcttcattcgaataaaaatttc
atgttaagctttcataaatacttaattgtgttaagaaacacgaaacagacaaacagacattatttccttgcaaaa
tactTTTAGATGAAAAgAAAAActtgattcatatttcatattacttatttcatatgacaggaaaaaagagacgta
ttaatagctgctaaataacagataaatgaataaatcaatatcaatgtatcaaaataacagtgcaattaagcgaat
atttagggcagcaatgcttctagttgaaaacatgctgctttattgttttgcaataaaacaatcatcaatattcac
ttaaaattcatccaacgcatttgccgcttgctagacgcttaatgcttcataaagtacgtaactcgttcctcgagc
tgcttacgaaatcgaaccggctaaaccaccgaaacggagaaagttgccaccttgccaatagagagaagagcagcg
gcgtccacccaaaccctcaatcaccccaaaaaccacggtaagtgattaggaggtgacgtacgcagaaaggtgaaa
aacgggaacagggttagtgcacacaaacacggacgaaacaaaaaaaaagcataagccctgcatcagtaccacggt
agcaccaagtgcacccctttgccccatatgttgtcttgctagacgcactttcgatttcaaatacacacacacaca
catatacttgtccacggaagacaaaaatcaattttccttcttgtgaccttccctgggcaagacatgcttcttggg
tcgttccccgttcacgccgaatcgttcccccgtgctcagtctgtctcgcttcacttccgaaactttacctctgga
aaagccctacccaggccctgcccgacccaaggacggttactatggacacggcgagagccacggaagcgagagata
gaaatagatcaacgtagggcatgagacagagagaatgagagctagcggcagagctcagcaacttacgagcaggcg
tgaaagagagcgcgttggaatagggaagaggaaaaaaaaggttctgttttcttctgtttcaccctcacgcagtgc
gttgtagctacccctagggatgcatgggatggttggtagtactggcaggtcccaaaaaatctcagatcagttttt
aaatcgccagtgtgcagtgtggtagtccttctggaaagcctgctggtcccgcacggagttttgtcaagtcgtaag
cgtatgtgttttgtacgagttcgagtgtacgtacgcggaacgttttcggagcagagcagcaatacattgcaggcc
aaaagtcccggttgttacgaaagtgttcagttgcaggagtcgtttaaagacggtgaaacgttacactgttgtgct
tgtgattgaaatatgctacaaatcgaatcgaagaaagattgtgtttaacaaagtcaaacatcttcctggaatgtt
tgagtgatttgcaaagtgttgtaaaaaaaaagaaactgaaagtgaagagacacaaaaacgagagacacaatttcg
tcacggacccgtccccgtccccgtgatgctgtagtcggcctgtggtcagcagcaggacatcgtcgaaccttttgg
tctacattttcttcgccacatttgcatcgtgcaaccattcaggtaagaatgtcacacagcacacagaaacccaat
cggttggaggtcgaatctcacttttacaacacaaactcatgccggcacaaacgtacgagcccgaaagatgattga
cctacttccacgcccccccgtccctgcatcctttggcattcgaaggacaactcttttgtccttaagattttacag
cgcaacattgggcccccgcagtacggtgggatggtgcaattaggaattggcaaactttatgatggcttcccaaac
tttgacttttcaaagctttcctctccattggcactctcctgttgttgggtaggtaggtgactcagggacatcgtc
gagtctacccgttcgtatatggtctgagaaagtaccctcggtactttgggtgaggcgtatacaagtcgggggcgg
ttctttggccaaccgaacggagtgggaaagtcaaattcgggggtcagctttcgtttcggggtctcgtttgcgttc
ggcccaagggtacggctgtaaaatcgattcaaattcagagagggaaaaaggggaagcttgtaaaaaaataaaact
taaaaataacacatctccagcatcccatggtgattttgggaacggggacttgtgcttgggacggttgcaatgctt
gcgagggaaagtgcattgttgtcacaattgttgccatcgaccttaccctttacaccgaaacgggacgcaccattt
ggggcgatggcaaaagggtcgcaaaggttcgctcttagttcttgctacgctcgtaaagtcgaatgtttatttacg
agccgtgaggaaagtgtttagattttcgggatatttgtgacgtgggtgacgcatagaatgggaaacaatcgcttc
ctctacgcgtactttcaaagaacgaatgggtacatgtggaaatggctggaacggggaaatgaaatggccgtttgt
tgcattgtaaaaaccgacaaaaacgaggtagaacccagagttgtatagggtgtaattgaaattttaatgttaaaa
acagacgataatgtttggaaattattaaaactgcaaagcctcacaatgtttcaagctaacaaaacgttcattttt
gttgaaaatatgtaattcttcatcatactattaaaagaattgaattcatttcaatggaatatcatgagaatattc
ctagaatacagtaaattaattccaattttccttgaagtatacactcattatgtgatgcttctcggcgacggtaca
taatgaaacggctcccccacaaaatataacgacaaacaatagcgttttgtggaggaggatgaggcaaaaaaagcc
aaaaccacaaagaaatattctggattacgagaaccctcccaaatatacagaaaagagaagaaggaagaaaaaaaa
cgaacacacaaaccttcttctgtcgcaacacacaaaacgcaactttcctgccatgccgggtgggttatcgatttt
ccaaacccaccaaccaagcattgagcgttgtgagaggaggcaaaaaaacggcaggcaaaaaaggaataaaagatt
ccgcaaaaatcctccaagacaaaggaggaacgtacgcattttccaccccaacgaaggagaaggtaaaagggggga
gggtggtgtaggagaagaagaaagaagaaaaactccttcacgcaagaggggacaaacaaagccggcaaaatggga
aaaatgctgctcggttgttgtgttttggtttcggtttccattccaagggaaatcgttcgttgctaatggaagaag
aagaagaagtagcccccaaaaaaactctcttctctcgtactaaacgagcacagatacattcttgcaagcaacaca
cacacataacactaggagaagccggaaaatagtaaaacacacagcgcgttcaattatcgtttttcgggatggaat
aggggggaggcttgtggtaaagatcgttcccaaacgcagggaaataaaaagctgcgatgaaaataaaaataatca
cccacacacacacacatacacgcgcatgagtgtgagcagcagcacattttgcccccttttttgtcttctcgggac
atttaatttggctgtggggaggacttctcaccctcgcaaacacatatacttttcaccgaccctctatcactgtgt
atgtgtgcgtgtttatataccgagggtgtagcaacagcaaaaaaaaaaccgtgtggcatcgctgtgtgagtgaat
cgcactcgcgaggggagaaagtgaaacacacaaccatccattacggttactaaagggcttgcctactcacacaaa
tacgtacaccgttttaaggggaggataaaacgaaaaaaacatgaacacagcatgccatgttttactgatggtttt
gTTTCTTTTCTCTTTTCCCccatttttgcagaatgcagaactttgactccgtaatggcgatggcgGCAGCAACAC
AACAACAGTCACAGCAGCAgCAGCAAaCGGCAGATCAACAGCAGCAAACGGCAAcGCCaAACGgttggttcgatt
taacgatcaaatccgAACCACTcGACTAccATCcACATCATCATCATCCGCTGCAGCAGCATCACCATCATCACC
TGCACCATCATCGcccgggcggagtgCAGCAGGACACgacgacgcacctcgcgagCGATTCaCACTCCAacCCaA
CCTCcCCGCAGAGCGTgGACAGTATGGATTCACTCAGTggtaagagtggattttttgaggcaaaaggagcaaaca
gtctcatgtcgggCGGCTACAACCCtctcggctttaatccactcacaccgcctggctattcggggctgCTGATCC
CAcCACCAcCAGCACAGCtcGCCGCTCAGCAGCAGCAGCAGCACCAACAGCACCAGCAACgcCTAGCAACAcCCA
ACcgaatgtacggcaatggtacgggcaaggtggagctgccaacctccctaacgCCGACcCACACCCCACCGATGG
ACGTGACGCCACCAAAGTCCCCCAAGGAgtcgctcgaaacacccaccaaagaGGAgGACGCCgGCTCGGACTGtG
AGGATggctCgTACGAtGGCAGcGAgGACGAGGAcGGCATCCGCAAGCCGAAGgTgAACTCgCACGGtcAGGTgA
AGAAGTTCcgcTGCAAGCAGTGCGAGTTTgTCGCGGTaACGAAGCTCAGCTTCTGGGAGCATACgCGcAGcCACA
TCAAGCCGGAaAAGATGCTCACCTGCCCAAAGTGTCCGTTCGTGACGGAGTACAAGCAcCAtcTCGAGTACCATC
TGCGCAACCACCAGCGcTCCAAGCCGTTCCAGTGtCCgAAGTGtAGCTACAGCTGCGTCAACAAATCaATGCTGA
ACTCGCACATGAAGTCgCACTCGAACGTGTTCCAGTACCGgTGTGCgGATTGtAACTACGCCACCAAGTACTGCC
AcTCGCTCAAGCTGCAtCTGCGcAAGTATgCGCACAAGCCGGACGTGGTgCTGAACCTGGACGGtACACCgAACC
CGCTACCgATCATCGAtGTGTACGGgACaCGtCGTGGACCgAAAgCgAAacCGCAGAAGaacGCCGATaagcatc
tgctcaagcaagaacaggctcagcaggagcagcaatctcaaccactcaaacagcaagaattgaccaactccggag
atcaatcgcccgcaccactaacgccactaagtcagcagggcatggcaacggcaccgacgactccgttcacccctc
ccggaagtggCCAAACgAAtgggctgatGCGcAACCTctTCCCaCACCAGCTCTTcCCGAACCCGCTCGCgCACA
TGTTCAAGAgtgcggcgGCCAACggcagtctgCCACTgTTCCCGTACCTGAACCTCAACTTCCAGATGTTtGCCG
ACCAGCAGGCCGgctTGcagcagcagcaGCaGCAACTCTCCCCCCgCACCttccagcagaacctgatgaaccagc
tggcgggcgaaaagctgaacggcagtgcaacgagcagcggctccgaccaggacaatgatctttcggtgcggacca
gctccagcggctCCACCCTGgGCGAgGAGCTGCTgAAgCAcATTACGGCggcggcggctgacagttcggcagcgg
tgggacgcaatgcgctctcccaggaggacagtgaatcggagacgacccaggctacaccgctgcaggcatcattcg
atgagttcccggcatcggtatcgtccaatccgcggacaccttcgaccaccggtaagggtgagcggagtCGCCGtA
AGGGACGTGCCTTtAAGCTGGAGCGGCTtacagaaccggccacttcgtcgggtggctcaaacgaaatggacacac
actacgagcacgctgaggaagcggcggtcagtacaccggtgacagtagctgtcactcgagaatcccctgcgccgc
ccaagGAAcGTTcacTCGAGTGCAAGTACTGCGAcattgcgTTCCGGGACGAtGTgCTGTACACGATCCACATGG
GCTAtCACGGGTACGACGACGTGTTCAAGTGCAACATGTGCGGCGAGAAGAGtGACGATCGcATCGGcTTCTtcC
TGCACATTGCcCGcAAGGCGCACTGATCCGCTgatAGGGGACGCCcgagatggtggcggcgtaCCGAATCGGGGa
tgaatgcgcatgcgggacacactacctgataagtatttatttattgtaagagggacaggCGAAGACAACGTGTTG
GTtgacccttatttcccgatgagtttgtatatgcatacataaataatttcgcaatggcagaagctagtcggcaga
gaacgttttcagaacgttagtgggaagaagaggcagtttgggttttagtggTTTGTCTGTAAAAAagcaacgcAA
TTTGAtccaTTTACAcacaaacTAAAGTACCCgAAAacaatccaaagactgagcagaggaaaaaggaaggcaaaa
cgcatgtagaaagcaagaagatagaggaagagacagtaatgcaggaagtaaaaagttactatagtaagtaagacg
gcacagtacgagcaaaagaatcaaagatattcgtaggatgagatggtttgggcgaagctcctcggattttcgccc
accccgttttttgcctcgctagtggttaagagattgttacgaacttcttagcgcgtagaacattaggattattta
tactggttgacggtgcacacaataaagaacactaaattcatctaaattttcgggccttatgttttctttttgaaa
atatacttttggtataactttctccatcacacagaaagctacagctatttctcagttttctgtagttgaatccaa
ggaggcattgcaaaagcttttgctaagttgttcgttaaattttacttccactcctcttcaagaaatccaatccat
taaaaaaactgaaaattgaaatcattttcctcattttcattaattcctgtaaagatctttagcgtcctttaaagt
tcctagcatctttcgtaaggttagttgcactaaaaacgatctttacagcgatctttacagctaattagcaccacg
ctcaagtagaacgcttatgatgtcaatcggggtgtcttccgattgggatcatcattcttcacctttctgctcgtc
attcttcaccttcaccccgaaaagatccttcgaccttttgggcccccttcaaattggaatcgatttcatcgcaat
acaagggcacctcttaagaaacggtgcgccacgtgcccttggttcctaaccgcaagataacatctaggagttccc
ttccgatcttacgatcatccacaagctcaagacagcagggcatgaagcagtgttcgagagctacggtaaggtcct
ggtgctaagggtgcctagggtcttggccggaagtttgctagtttcgttcccttctgaaactgaaaaaaacacaca
ttccttcccttgcgtatgattcccggcacgtgcggtggaatgtttcggtggataaatcttaaccgagactggggg
aacacttttcggggaagttaattgaaatttttccgtaaatttaaatgccaatctgcgcaagatgtggaaagtgaa
gaaattgtgctgcctaggatgtagattaggctaacggtggtgctgcgcgcgcgtggtggtgcaaaacagacggtc
taacgagggtcatgacaggacgtggatgattgatcaatcgattgcattgctgtgctgtgctgtgttttccctgtg
ctcttccacaacggttgggggatcattcaaattgaattctaaattatagcgcgtgcgctctgtcagctccgatag
ccggagccgttaatattcgtcggtatgtaactagggggagcgatagagagaaatgagaaatcttctttccactta
tgtttttggttttcttttttctttataggaagatatttcatttagggagtcacagaatccggttcgaaggatcaa
atggaagacactttaaacgggaaagcaaacgaaaattctaatttctcgctcattacttatccagatcaggccgtt
atggcgcagtccgttgacagagtttgacagtttttttaacgacctacaaggacacgtatcgaatcacgctactgt
tgcgacgagaatttcgcactctttttgatttgccaaacaaaaatacacacaacatgaaaaaattaccagaaaaaa
gtctacgtctcaattccaatggagagtggacgacaataggtggaaaaatggtgtcgccgaatgcgtaatgcgatt
actgccgagtgcagcgaataggattaagcccgacccggtcttcagtggcacgtccgagaagagctaaagcttcgc
ccttcgggttcggggattgccctttggcctctttcggctagagccacggcagcagcgacgacggcggcttgccac
ataagtccgcactcggcacgcaacgtaactgacccttaacggggacggcttgtcgagccaaatgggaggaaatgt
gtaaaggaacacaggaaaaaaaaaacacaacaatcttgaagtatggcatggacacatttgcgttgcaacgagcgt
atcggaaggataatgagcaccgaagacaacccccaaacagacgcaagattaagttgcgagtggcagcggagcaga
gcataaaaaagaacacaccacaaggtaccgcgcaagatggacgataaatctttacttcgcgcttgccggttaccg
ctagagggtcagctggaaccactaggaaggagtggatgtaaccgaacgtaacacgtgtctaatcctattaacgcc
gatcgtggatcgcaagagatctaaataggcgtggagaaatgatccttgtttatgccaaacgaagacaaaaaaaaa
acagcacgctacgcgatcttctagcttgaacgtcataattcatttatctgttgctgtgtttatcgaatggttttt
ttcacgttttgttttggcatgcgcgtacaaatccaacattctctctttggggaaaggaagctaatgtgccagtaa
agagctgaccggtggcagtacttcaaaagaggattgattaaaaagggcaaaaggacgcagcctcaaaccgcacag
ctgacggtggcgctttcctgttttgttttttcttcggggaaatgaatcaattgttggttagggacggctgcctca
gtccaacccacatcttttttgcggtaaaagcgatcatgaaaaaccgaccctcagcgatcagttgatcgatccgaa
cgttgtgggtgagtgaatattttattctacacattccttctcctgtctcctgttcgaatgagaaatgattgcaac
gtcccatctgttgaggacacagcattctgcactcttttcggtggtgcctttgggcttcacgttttaacacacaat
tgcactgtggactgtttttcgcttttctgtaacaaaaaagggtgcaacagtacgagtgacctcaccagcatgaat
aaataaatatgatcgatgatgctgctgctgctgatgatgattatgttgttgttagggcccgaacgaatctgcgag
tgcgggagcaatcgaaaccaatcaacaacttcagccacaagctccggtgaggtccggatgttcacaaaccaacga
cacaaaaaaggcaaaagggttcattacaaaagggttttgggatgtttgctcaacagcaacagcgcaccatttgca
ccgtaacgagtgaaacggttggaagaatttgttgaaaaaggatggccggcttttgcaccgtgcatgtgcaaaggg
gcttgattactggggcactgcgctcaagtacaggaaaaatggttactttttgcacctttcgaaggttttttttca
gttcagctctcgtgaggatgcatctgcaaaacgcacagttgaatgtcatgctggtgcttgcaactggtgttgagg
gtgaagaatgtgagtgaaaggtgtttcggttctttcaaaatacttgcatatgttcatatttttatgacattcctt
gattttgtgtattgcactaaaggattttcaaagtgaaaaacgctgtgaatgagattggagacaattattgctctt
ttggtacgcagacgacgaacctgaagcgttggatgaacggttagaaagcgagttaaataaaaaacgcgtaaaaga
ggactacaacaatgaagaaaaacatattttacttaaatacttaaactgtaaaaaatcccataaaaagtaatcgct
atcgaaaaaaatctgatataactcattctctacgtattgcctatcgaaagtaataaaatactaagagaagtaata
caatatgctatacgatttaaattccttattttacctaaaagtcctattttaaaagttccatttccaaatattatg
tcgcttccgaaacataattaacacacacacatcccaatgtcctagccagtatgctacagctacaccgccggtcaa
gcatttgtcgtcataatgtcctaaaatcccttgctttagctctacagctctacaatgcacaatgtccattttaca
gctctgtcgaaagcgaaatcgttggagagcgaaacacaagcgcaaaacagaaccgaacatcggtacgtttgtttg
cgacgtaaacgaggcgcgccgttataaaaatcccaaccaccgccagctgtccgttggctttgggaccgttccaag
ggtgagaatggacgtccgggaggtgtggtgtagagaacgagtgagcaagaatggaaacgaaaatcggacacccga
tcggatgtgttgctgctggtggctgtcgctgccatgaccaggatcctttcgctgctgtctcttccgttccccctt
cccccctcacgcgatcgtaccgtgcacgagcgcaaccacaggccaggacgacacggtggccacagccgaagagcc
gttggacatgggagattctctttttaggtacggatgcttccagcgagctccagcgttcttctcgctttttccctt
ttaataacgcatttattattattttttctctctccggtgccgcgcaccctccagggagacggggaagctgcacgc
agcaaaacgatcgtccaggaccggcgcacacacacgcggcaggaaaaaaagaagtagaaaaaggtattttttcct
c
 
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3225
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4350
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5400
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5700
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6375
6450
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6600
6675
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6900
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7125
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7275
7350
7425
7500
7575
7650
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7800
7875
7950
8025
8100
8175
8250
8325
8400
8475
8550
8625
8700
8775
8850
8925
9000
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9150
9225
9300
9375
9450
9525
9600
9675
9750
9825
9900
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10050
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10200
10275
10350
10425
10500
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10800
10875
10950
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11175
11250
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11400
11475
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11625
11700

Enhanced BLAT Score Card

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 Mosquito EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  

 Gene Name: hunchback
        

     Reference Genome: Anopheles gambiae
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  

    

      Score
    
    
 =  
    
    

      Total number of aligning bases.
    
  
  

   

     Start/End
   
   
 =  
   
   

     First and last aligning bases in reference sequence.
   
  
  

    

      Ns
    
    
 =  
    
    

      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).







  

    

      R/D
    
    
 =  
    
    

       Sequence rearrangements and/or duplications.
    
  
  

    

        R
    
    

      =  
    
    

      Total # of aligning bases unique to the 2nd or 3rd eBLAT
    
  
  

    

        D
    
    

      =  
    
    

      Total # of common aligning bases
    
  
  

    

      Red
    
    

      =  
    
    

       Common to 1st, 2nd  and 3rd eBLATs
    
  
  

    

      Brown
    
    

      =  
    
    

      Common to the 1st and 2nd eBLATs
    
  
  

    

      Magenta
    
    

      =  
    
    

      Common to the 1st and 3rd eBLATs
    
  






 

    

        
 
            

              agambiae
              (Ref  Sequence)
        
 
             
Score
             
Start
             
End
             
Ns
             
R/D
        
  

          
 
            
6750
            
1
            
6750
0
88 
  

          
 
            
214
            
1736
            
2622
0

                 0 /
                 126
               
  

          
 
            
194
            
1159
            
2430
0

                 0 /
                 106
               
 
               

               
                 All Alignments
               
                 1st
               
                 None
               
           
   


    
    

        
 
            

              cpipiens
        
 
             
Score
             
Start
             
End
             
Ns
             
R/D
        
  

          
 
            
815
            
2123
            
4076
0
16 
  

          
 
            
165
            
1927
            
2446
0

                 87 /
                 5
               
  

          
 
            
118
            
1953
            
2430
0

                 37 /
                 8
               
 
               

               
                 All Alignments
               
                 1st
               
                 None
               
           
   


    
    

        
 
            

              aaegypti
        
 
             
Score
             
Start
             
End
             
Ns
             
R/D
        
  

          
 
            
607
            
2139
            
4127
0
 
  

          
 
            
132
            
1995
            
4252
0

                 86 /
                 3
               
  

          
 
            
108
            
2369
            
4436
0

                 65 /
                 0
               
 
               

               
                 All Alignments
               
                 1st
               
                 None