Anopheles gambiae Kruppel Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except Culex pipiens or Aedes aegypti


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.


aacgtccaaaccgtgtacggaacatgttatgggatattgaagatgcgtgctttgatatcgagttattgtgaccta
cgtttgtccgtacgacgttatacaagagggaacgatttcaataactcccgtagatcgatcgcggggggcagtcgg
ttccagtttccagttgggagtatctttcctacccaacgttgacgtaaccttgctaacctaaagcgtcaccaaagt
agctcaatcgtccaaaaggcacaaactcaatcgtttccttgcccatcaataacgatcgcatctccaaaacgagga
tcgacgtgttcaggtaatactggccagcgtgttcagcgcttccagttaccgtgtgtgtgtccttctctcgaatgc
gaaaaaggccgccaaggatgaacgtgagcaattaaaaatttgaatactgcctggatgggattttcggtgacgtga
gagcctcatttttgttctgtccctttcggacacttgcagattgcagattgagagcgaaaccccgaaagcaagaac
actgccagaaattcgcggggggttgttgaatgtgaagattaaaacatggagcctagctgccgcctcagttcacaa
cagagtggggataaaagtgcgtgaaggcttacacgcaccggacatcgtgtaatggcagcgtgtcaaaacgagaca
accggagttgtgtgtgcgtcgtttttatgcaaccgtttcgcaggaagccttttttcccctttttgacgccggcgt
gagcattggaagtgttagtgcgataggggaagagtccggtttccgggagtgaaaacggcctctgttccagcaaaa
ggatcaggcacgagtagaaggttaccttaaaagccagcagcaacagcagcaatacgattcatcaaagggacaagc
tgagctgttaaaaaagatgagcggaaagacacgcattcccactctctctctctctcggatgctttttaaagcagc
gactctctcgcaaccgcacaaacacattcgcgctcgaaggaccagaatgttgtgctaggtcagcaaaagcaaaag
gggaaaacggatcagtcaaacaaacccgtccattacgtacccaacaaagagcgagcaagagagcaagaattagag
agagatcgagcacgctttgaattacgtaaaaaaaaaaacaagttgtaaggggaaaaggagagcattgctacgaaa
ttcgcttttgtttgctcgtgtatggtaccccttctctctctatctctcacggtcgtttttggaatttcgtttcaa
ttggaatacacgcacacactcatgcggctttgtttgaatgtgtgtaggaaagggaacgaaatggttaagattccc
tcaaagcgagagagatggaactagaccaaatctttgctctctgtacacgcgaaagagacctacgcatactgcgct
gcgctgccgtcggtgtggtaggaaagagagcgcaccagaacaccaccggggcctaccggtgacagcggtccaacg
ttcgggggtgcgtaaaaacgacatcccttgtaccgcgtgcgcgtgtgtgcgtgcggtgcatattccactacccct
taacacacggcacaccgaccgatttttcccttacgtactgatttctattatttttcaaagatcactcgcgtgccg
ccactcaaagccgacggatgtgccgtttttgcgaggttcgctagcgcagcaaacagcacacgaaacagtcacggc
gccgccgccttacccatcgcttttgctcggctttgcatcctttttattatcgtgcgcggctggccaaaaccagtt
cgccagtgaaagcaacccctcgccgcttcgccgccccgcccgaattcttcttcgcacattccggcgtgctcccgc
gcgtaaagcgcactccagagcgcggtcgtcatcgtcagtcgttcggtgtccattcacgaattcggtcgcaaagcc
ggcaacaaacaagcaaagccttgcctagccaagtctcgcatagacttcaagcgaaggcttcaagtgcatatacaa
tacgttcaaacattttcgcgttatatcgtgcgtgctgtgttcttagtgtaggctatccagcaagtgtgaacagtg
gtgaaagatgtgcaaaacgaacgtcgtgaacgaattatgagaacaaaccactagcctgggtgaagcatttaaagc
agcagtgctgatattaaacacgaattttcagtgattttgtgtcgttattgttgatagctcgaatgagcctagttc
tttgcaaaaacattttaaacaagcgtaacttcttccgcaagtgactcgccctggtgctggtgtattacaacgcga
agggtttggaacccttccctcggtggcatacagtgtcagcgacttgtagtgtggtgaaaacacacatttcagtgt
atttttgtgagtgtttgtgtggaattacttccaacattcagtgatagcagtgatatcacctgaacaacctctcca
ctgcgggaagcgcaactgaacctgctgccaaccgcttgccacggaaccatacaccgacaacggagcaactacgga
cctagcaagtgacaaggcagtaatggctttgtcgcttctgcaggacgctcaaacagcaagaggtaagcagtcgtc
gattaaaataaacgcaccatatcttctcaaaaccatctcgtcaaccaagacacacacacccgcacgaagggttag
cttattgcattaattgattcaatttaaagagcgtctaaagcggcgggttggaatgaaagtgaaacttcgtggcgt
ctcgtgcgccaccctccctttccaaaccccttttctttttttatttattttttgagcgctttcttatcacacacc
acctgggacgctctgtggtcgtcgtcgtcgttgtagtcgtcgactgcatgcgcagtacacagcaaggtctccttc
acgggggacttttatgtagtacataagggccacacggttaaggccagccgaaagatactttcacttttcattcac
acttcgaggacacactcgctttgcgctatgcggaaagagcgctgggaaagatacggagaagtggagaaggtcctt
gcttctttgttgctttttcttcgggttttagagtattgctaacagcaacacttttaaggccagatgtggcagaaa
tattacctccccgtggagatgggtagtatttgagaccaattttgctttaattattatgctgggaacttcagacgt
aatggcaggaagaatatattggcaaagtagagttccgttattttgtaagtggtccaaagtgaaggtcagcagaaa
aaggaattatttgcaattaattttgagatttttaattatacatgaaatctgtttttttagtataatttttatact
tgatattaaaatttaccaaaaaaatgctgttttttgcaaacaccgacggcattgcaacctcttttgccaatatat
cataaatgtaatcaagcacacaacttccactcaaaaaatctcccgaaatgacaaataaacacccacacaaacaca
caatcctcgtgtgggttcggttgtgtttgcggctgtaacatgcgaaatgtaaacaggaattaatttcacttcctg
atcccgtcctaaatgagaaaacaggaaactcaatcaagcagcggcacgcgcgcgcgaacacttcttacaaacaaa
cacgaggacgtaggaaaagcaaacctcctgcaggctaaaatccaaatatacacatccaaaaaaacagcaacattt
gaaagggtttccaaaaggctgcagaactctttcactaagagagagagagagcaaaaaaacggaccccaatagaaa
acgctcctaatcgcaatggcaaacggtgcaatgccaaggtggcaccttctaattttgacgaatgaaagcgaaaca
caaacaaagactcccccctttcgcagtaacgtaaacaatcaatacaacactcccatccccccccatcggtaccaa
tgtgtgtgtgtgcgtgtcagttagaaagggaaggcaagcataaataaaggattaagcttaccaacacgccacagg
atatgagtgtgtgagcgccacccagaattcagcgcgccaaaacacacacacgacggaagcgcctacttgggatgg
gaatccttccttccttccttactcgtgtgtgtgtgcgtgcctctgcttcggtgagcagatgtgtggcgttgccag
agcaacagccacacatcgaaacacacacgcgcgcacgcgactcccctttgcaggaccaaaaacccattcaaaccg
tctcgccgcaagcttgagacgggtgccgcgccgcaaggacgaaccaccagcagctcgagcagggacggcagtgcg
cgatggaagggctttgttttgctccccttttttccccgggccgcctccttgcacacgaacacacgaaggtggaat
cctggtggaagcgatacacactacgatgtgtgcggaatgcccctttttgggggtgtgagtgtgaggatatcgtac
gagttaaaggcaactcgttgcttttaacgcgagagcaagagagcgagaaagagcgcgaagaatgtgttttgtacg
ctgcaaaggatgcgccacgaaaggggagggaagctttgttgctcacatggagccggcttttgcgttcattttgcc
gggtttttttgtgccttcctctcggtctaggaataaccgttcatgtctcgcgtgtcgtcattgagctatttttag
agcctggcctgtgcgtttttagtggtttagaatagctcttattgcgaatggcggcgtctgacacttgatgaatgg
tggcgttcttaaatagccctttaatatccttttttggacaagatagtcgaaagtgcgtcagaagttcttatgatc
tgtttttacccaacttcaaccttcaaaatacctcccacaagaatccccaagaataaacatataaattaacaggat
atctctcctcatTCTCCtTgTTcTCAGGATTAgacGCCGTCCGTAcgtTGCAAGGtATGAAcCGTGAcGAGGAGC
GCAGCcTGTCGGTaTCGCCACCGctcaccggCCAGCgCCAGCAgcaCCAtcTcGcCATGAgcttccagcacacgc
cctccctgtacggtgggttccaccCGGCGaccGCGTCCGCCATGGGCATGcTcGCGCCcCAGctgctcgccGCCA
ACCAGACGGCCGCCGCcctaATGGCCGCCGGTCTGCCCATGTCCcTGCGGgcatcGCTCGCCACCGGccTGTTCC
CCCcgCATgCCGccCTGTTCGGtGCGTGGGCACCACCgacgCCGACCAGCAACAACAGCAGCCCACCgCCGCCCC
AgAGCCCgATCTCGCCCGCCCTcAGCCACAAGAGCTCCAAATCCCTCAAGCTGAgtGTCGCCAACAACAACAACA
ACAGCAgCAGCAcAAACAACAATCACATCGTGTCCACcACCTCGGAGATTgTGCCgCAGacGAAGAAGcTGACCA
AGCGcAAGCACcaggcctcgctgcggaaggaattgtctgcggcggcggcccagcaccaccagcaacaacagcacc
accatcaccaccatctgcagcatctgttgcgttcgccaagccaTTCGCACcaTCTCtCGATGCCGgtcGACATcc
cGGTCAGCCCgGGACCgATCTCGCCCCcgACCTCCGGCTCaTCCCCCCAgtcgaACGGgAGCGTCGAgctgccgg
caacgatcaccaccacgaccggggcggccggtgccgccgccggcatcaacaactcctcctcctccacctcctgct
cgtcggtggcgtcgCGGGATCCgtCGCGcGACAAGgtGTTTACCTGCAAGATCTGCAgCCGCTCGTTCGGCTACA
AGCACGTaCTgCAGAACCACGAgCGGACGCACACGGGCGAAAAGCCGTTCGAGTGTCCGGAGTGCCACAAGCGGT
TCACgCGcGACCACCAtCTCAAGACgCACATGCGGCTgCACACGGgcGAAAAGCCgTACTCcTGCACgCACTGCG
AcCGgCAGTTCGTgCAGGTgGCgAACCTGCGcCGGCAtCTgCGGGTGCACACCGGCGAGAAGCCGTACGAgTGCG
AGATGTGCGACCAGAAGTTCAGCGACTCGAACCAGCTGAAGGCGCACATGCTCAGCCACAGCGGCCAGAAACCGT
TCCACTGTGATAGGTGCAACTCgAgcTACCGgcgGCGGCACCAtCTgCTGCACCACAAGTGcGGCctGCCgAGCC
CgCCgACGCCCGCggTCAGCCCGGCGGCgAGCGGCGACCAgCtGTCCGaccatgccaagtccgtgtgcggcgggT
CCGAAtcGagCGACCTgtcgctcgaccggctgacgaagattccgaccccgcccggcatgcTGCTGCACCAcAAGT
TCCCCGGcctaacgctgccgctcagcttcggcccgctgccggcgggcgatggggcgaaggcggacgcggcctcgg
cgatggatctgcgcgCCACCAgCCggTCCCGcACGCCgCAGCAgATCgtgCACATCAAgagCGAgCTGCCGGAGC
AgACGGAGCCGGAAGATCTGAGCATGCATTCGCCCCGCTCGCCCGTCTCGATGGAgGAGCTGGACGAGCTGGACG
ATGCGGCGACaCTCTACCtcAAGCAgCGCCAGCAGCTGCtGCAGCagcagaacagcaacgccaccggatggagct
gtaaggcggagcacagcagggaagcataaccAAAAAAACAAAACAAAACgtaAAGCACTATcgACACACACACAC
ACACACACACAAACACACACctcaagatgccaatctattaactaaactaaagagttactattaagaagagTCACA
CACttacgcgtgttggagtacgatgatacggacggttattattaggagaatttatctaaACAAACACACACACAC
ATACACAtcttaGAGAAGAATAtGTGTGTTTTGCATAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAGTGAGAGA
GAGAAAGgGAGcGAAAGGActtcttcctgaaactgaaccacttctcgaagttgtatataatatatcaatgtatga
gccttTGAAATctcgaTGTACAAAGTAAtTTTAaCACGTTAtcctttcactgatcttttcacacatcctcccttt
aatatctctctctctctctctctcactttctctctttctcaaacgattttacaacaaataaacaaagaacatccc
aaaatcaagtcaaacactccaaacgttgcaaaagggagcttgaagcaaatctaatacgctcttaacttaagcgga
catactttttggttaattttttgctaacaatatacacatatacacccAAAAAAACACACACACACACtcatacgc
attgctcattagtttcgtttcggtcaagccggaccgcagtggtgcttgccccgccgtgaaaatggggaaaagggg
gcacagcgccactgtacaggtcgtttgcggtttgcttttggtataaaaagttcctcctcaatagttcgcgataaa
gtaaaagaaaatgaaaagagaagcaaaacaaaaaaacaaacaaagcaaaatcaacaaagtaaaaaaaatcaaaac
aaagtgtaaggataatacaaaacgaatggaaaggaaactccccgttttacacatcacaacaaaattggttccata
atcacattttttgacgaaaacgaacgccatcaactaacctggtgtttcagggagtcgaagaagatcgcgaggatc
gatctgggatcgttttcgttgttgggtttggaattgaatggattgaatgaagggtggggaaaactgagttggaca
aaaaacaaaactctcaaaacagcaaacgcggtttgcacagttgtgccaaaagtccaccttttttcgccaatttgt
gggtagcgggaaaattaggaaaattgcaacaaaaaaacacacacacgcaaacgcaaggtagcaacaaaaatcaaa
attcgtttttaagttttagttatagcttctaattttgtacgtgggggggtttaccgggttacgcttaagttgcga
ctggcaaagtgttaagaggcaaaaggtctgtttagttccgtaagtaggaggggtttttagttatttttcgtttgt
agtaatgtcgtggctgaactccagcaaacaacaaatggtgcggttatctattaatattatttttctttattttga
aaataaaacatatttaaacgctttttcatgcaaaacaacaacaaaaaatacatgaaattgcgccaaaatgaaaac
gtgaaaacatgaaactacttttgtgtttgttttttctttatttctttattaattttattccttttttagtattaa
gatttaggtgtgctaaaaagtctcttgagttattttttttttttttgggtcgttttttatcatttgtacacaact
cacacctcgcttcgagagggctcaacagttgtcttcgattgtgttcaccttctttcttccccttaccagaaatta
aaaaaaaaacaagaaacccacttctttccacctcatcaacttccacccaagcagggaaggcaaagcctacaagtg
taacatgatgctcaacttcctaaccttcctaaattcctccttcccgtgacaggcaaaaaagggtttcctgcacag
tgttagaaaagcccataaattcctcacacccgcctcccaaccgatggtgggagattgtgggtcgattaaggagac
atgttttacatacacacaccccgcttgacctaaccgtgtttccctccccccagggggattttccggtggcaaaag
cgttcgagtggagcacagagggactgtccggaggcttcgaaatccctttcagggtgtgtagtgattttcattcaa
taaaataacaatttgctgtggatttgccggcatgtcggtccgattgccggacgttcggacaagcgtagccaaaaa
aggagaaaaaagggactcacaaagggttgttttttggtcagtgcaaatattttaacccctcgtactgagtgaaaa
gggtttattgtgatgatttcttgataagggtgtgaattaggaggcagcaccccgaaaaggcgtaatttacaccac
gcgttcttttttgtgtttatgtgagtctcgggaagacagaagactgacatttttggggaaggattgaatgcaatt
aaagaatgatcctggaagttcatgtcttcacagggatagaaattgatcctattaataggtcgataggtggaagaa
acatgttgataaaggttaataatggttctgattgatttgtttcctttctcactctctttactgctctctttgtaa
agcatcgatcctcacggcccaatatgcattcggaagaaacaccgatttcccatttcagggacatgagccagttcc
ttgaacattgtagcagaatgagtgtctgcaacacagacaacagcatttgcaaaatcgttcaccaaccaaggccaa
tcatcccaaactgttggccaatcgaccaaaccgctccgattttatttgcaaacctggcccaaaaccctagcccta
gtgcagtcctccctctgtgagtccctccgcatcgctccaattgtgtggccataaatatcgacaaaataaaccata
aagcaatccactgtgtctcgcccgcatcacattcccccggggttggtacaaacgttttacaatcccccgagagaa
gatgcaaaggccccgttgtccttgagttccttttctttcttgtttctttcgtcgtttcgtgttgcttcctttgct
tctcatctggtggtgtaaataattacatgcatttaaactggaccaaagacacacggccgagacagaacatgcaca
gatttggtgaggacatttggttggtacgagcagtttgctggtggtgtcgttgtgtgctgtcatgctgcaatactg
gacacaatccgggggttttcgtggcaggtaacgtaaggctcaaaacggtctaaagatcctgctgagaaaagttga
gtaggaaaaatgagtccctgaaacacacacaacagttctgttttattcaattcaatccatcaaacgtaaacagag
acctaaattttcaaaaagaaaaacaaaaaaacagttcaatggggaatgtcgctcagctgtaaatagttaagccaa
attttaaattccctttccaaatatgtgtcagtggtcaacaaaatagttaaaatacacgcgcgcacacacacaccc
acacatcagacacacattatacatgatggtacaatttaaatgctcgatgtttggtagagttccaccacagtggaa
tacgactatataattgttaatgtttaatagcgcgtggacgggtaaggtaatgccgcacacgcgcacaactagata
atgtaataaggtaataaggccaaataaatgaaacctgtgtccctcctaatgagcagtcacttaaagatgattcaa
atgaacgggaaggtgcatgttagtatctatacataaacaaaaggtgcaatgttttaacccatttctgttgctgtt
taatttatttagaatcaaaatttagcttaagccctttcttattcttttaaacaaattgggcgaagaagttatcaa
ttagttgaaatcccaaattaaaccaaaaatttagatatatttaacaattataaataaatgtacaataaaccatcc
aaacaaaagataacaaccatattcgtagcacaaaaacaaaaacaaaacagaaggaacaaaaggagccgattgcaa
aaagttttccaatacatttataaatgtgtaccccgtcatgtaagattagatgttggttagcgatattcttgaaaa
gatgaaagtgtacgaaactgttacaaacattgtcgttgtcggaacagaagcatcagaaaatggaacatacacaga
taatgaacgaacaaaaaagggatgcaaaagaagatttgaaataggaaaactcctacgaccatagtacaaattttt
gctctagaaaaagaaacaaaaacaattcttgataaaccccccaaacagtgtttaattgtaagccaatttaaaagt
acactaaacctttatgaacttatgcaaaactcaaaatgaagaaattgtaactacctcaagaaaaaccagcactgc
aggaaaaatgggaataacaggaaaaaaaaacacacataaacacacatgaaacaaatgagatacggagaagagcaa
cgaacaaaaggtgttaaaagagatgcaaaaataaaatgtgcaaaattaaatgaattttaacagtgaacaaaaacc
gaaataaaacgtattctataacaatacacaacgacgacccccgactctggtgtgtggaagtgggatggcattatt
tgatgtgaaagaagaaaagtgaaagtgaaagtgtgagttgcaaaaacaaaggagtggatgaaaggagtgcaaaca
aaaaaatcgggaagcccctgttactgccttcagccgggatataacaggacaataaaaggcaacacaatcgagcgg
gaaaggaaggagcacagtgtgagcgcgaaaggctgttttttgtgtttttcaaaactaaaacagttacacacacac
gttttgcgctaccgtacagcgtcatcgtgctcgatgtaatcaaaaattccctcattattattgcttttaaaacaa
cacacctacacaacggcacaa
 
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Enhanced BLAT Score Card

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 Mosquito EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile



  


 Gene Name: Kruppel
        

     Reference Genome: Anopheles gambiae
    		





 Click on individual Species and Composite eBLATs to
view eBLAT alignments.




  

    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  

  

   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  

  

    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  




 
View test species eBLAT to identify gap(s).











  

    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  

  

    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2nd or 3rd eBLAT
    
  

  

    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  

  

    
      Red
    
    
      =  
    
    
       Common to 1st, 2nd  and 3rd eBLATs
    
  

  

    
      Brown
    
    
      =  
    
    
      Common to the 1st and 2nd eBLATs
    
  

  

    
      Magenta
    
    
      =  
    
    
      Common to the 1st and 3rd eBLATs
    
  









 

    

        
 
            
              agambiae
              (Ref  Sequence)

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            6150
            1
            61500133 

  

           
            277
            2055
            40200
                 0 /
                 144
               

  

           
            194
            1972
            366711
                 0 /
                 61
               


 
               
               
                 All Alignments
               
                 1st
               
                 None
               
           

   


    		
    

        
 
            
              cpipiens

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            911
            1638
            33990 

  

           
            167
            2554
            37660
                 21 /
                 64
               

  

           
            168
            1971
            37660
                 54 /
                 32
               


 
               
               
                 All Alignments
               
                 1st
               
                 None
               
           

   


    		
    

        
 
            
              aaegypti

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            566
            1850
            32760 

  

           
            126
            3403
            40173
                 77 /
                 0
               

  

           
            113
            2719
            35820
                 19 /
                 45
               


 
               
               
                 All Alignments
               
                 1st
               
                 None