Anopheles gambiae oskar Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except Aedes aegypti or Culex pipiens


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.


ttgtaccttagggccggtcaTCATAACGTCGTTcAaaGACaaGCCgttTACCTTCGCcGAaGCATCgAACACCAC
ACGGCACTTgGTAGTGTTCtTGGCCGggttcaataCAGCATGATGcggcagaTACCACcttttcacggagccatc
gtcctcactttcatcaaccactctacaatgccctaactcctcgtattcactcataaacgcttgatattgttcacg
taacgatggatttttcaacagttttgtttccaacaaataaaacctacgcagcgctacacttcgcgaacaacacaa
ttggcttatcgattcccttaaaggcaactgcacaacatacctgccactggattcacgataatgtgtcttcacaaA
ATGtTCTTCACAtatCTCgTCTTCCACCTTCACggaacgctcaCTTGTCACATCTTCaACTTCCCAAAAcCTTTG
cactattgtttccaaattttcttttgtcacaacatttgtgtacacctcacgctctttgtgtatttccgcAACACg
TCCACCTATcACCCAtCCgAAATgagtgtccgtcatcatgggaagtgtttttgccaatttcactgaaccagattc
cattatttccgaaagacaatccattcccaataaaatgtctacacaacttggattgttgaaatatggatcggccaa
catcgatttatccggcaaattccacttcgacgtatcgaaatacacagagggtattctacctgttatttcacgata
cacaaaacatgtcacgtccatagcaaaatcactacaccgagatttcactgtaaaagtacactttttcttcaccga
agattcaatgttgccaatccccttaaccggtacgttcacgtttaccaaatttacgcctaatttcgttgcaagtgc
ttcagtcacacaactgatttgcgatccactgtccaacatcgcacgacacaacaacacctctttgtttggtaattc
cgcgtaaagcaagacggtttgcaagagaacaatacttcccgccgcatcggtattgttcacatgctggctcgcgct
cacttgttcgggttcccttgaaaccggttctggaccgttgtcccaatgcaataccgtgttgtgtggtccgtggca
cctgttacaattcaaatgcgatttgcaacgatttcgccaatgtcccggttttaggcaaattaagcaaagacgctt
cgatctaataaaactttcccgatcctttccatgcagtcgcatcagctcagagcacttaaacgtttcatgggcacc
cttacacaattcacacacaactacactgcacacggttgtagctgcattcgatctcataggcgtaacaccacttga
gctgggccctttcgaaacaaaacgtcccctttgccccgctgcaacatttccttggcacctttctagaaccgacac
tctttcttttaggaagcacaaggttttttcataacacggaagttcatttctagggacactcgcttcccatagttt
ctttgtttcaatatctaacgcattcgctatcaaatgtatcaccatcgcacacgacagaccggtaaagttttcacc
taaatactttagattttccacgtgactttcaaccgattcaaccaaaccgcgcaaacctacataactttcctcatt
cacttttttcaaattcaaaagtccactaatatgtaagtctaccatacgccgtttgttatcataacgttcggataa
cagttgccacgcacgttcataattaccgtcgtttattgttttctcatctattaccttggcagcctcaccactcaa
ggccttttcaagatgatacaacttgatacgcgaatcttcactgcctttgtcaacaatatccttgaatattgtttt
aaaccgcgcccactcctcatacttgccactgaacgaaggtattggccgaggaagcggagcattcacaatcactga
cgaaacgctaggagcaggtatcaatgcctttggtgaaatggactgtgccgcaagggcttcagatgcactttctat
ttccatcatcacctcctcatgcaatttcactgtctccttaaacttggcgtcatgcacttcactttcgtcatgttt
tatgatctcaccataatgtttgttgtgttcttctaaagcactatctgccttcttcccgaacactttgcactgtac
cgcggtcagcgcctttccctcttccttcgcctgcacaatgttgtcccttatgcgaatcaattcgccatacgcaag
gtcacgcatgtgcacatgcggccttacagcaacaattacatccacccaaccgggttgtggcgccggctttacggt
tggagtgcgagacgtccgaggcgttcgagtcatgatgacgcgatttttaccgatatccaaagcacaaagggtcaa
tatccgaagttcgaaggaccaatgtgatatctcagcggataacctaacgcaatgtactgaacacggtaatcctgt
acgcacaactttattggttgcgacttaactCATTCGCGGTTTTCATCcgactgacccactccacttggtcacaaa
tAAATTTCATAATTccctCTCTTCTCTCActctctccttatctcttcattccctctctgttcccccttaacgtgg
tccggcgaacagccgcaactcgcttgcctcgcttctctggtccgtccgaccacacaagtcgcccgcttgcattct
acggtgggtttcgcggaattctggccggtgtcgatgagatcgaacaacaattgcgggtgccgccgttccagacaa
ttgtcgccaaaacagatgccactcggacagccttccgttcgctcctcaccccgcacctctctctccttcctcaga
ccgccattctcgcccgttccttagaccgcgcatctcgctcgttccatcgaaatggaacaaatggagttttctatc
ttcgctggaaaaaaggcatttgccctgctgtgtgctgtactcattttccatccgcgctgccttgctgcaaatttc
actaatgacactgtttcagatactactgtttacacattacggacaacaaaattggcacactttcggcatcggatg
aaacggaaaccgcacatacacacacgcactcccaagcagcacactttcttctcactttcacgcaaaaagaaaaat
acacttaccatcagcattgacgaaggaggctacgaccggctctggatctcctggctgtacgatagccgggtggac
agcgccgatgttcAACGGAAcaccggCGCTAaTAtTCGCACCACCACCACCACCaccgtacccaacaccgacttg
ctcctcctgcagctcctCCTcCGCCTGGGACAgTTTATCGTTGATCAGGTCCGAAATtAGCTGGCTGCATTCGGa
CTCGATGGCGTAGCAAAACTGTTTGAACTTTTCGAACCCgTCgcggGCaAtcAgCTCGATtAgCTGATCGCAgcg
CgcaTCCAGgctgggctCCCCggTcAgCtGtTCcTCcTgggCgACcgTGAggACgCccgccTTCAgCAAcAcCTG
CACcAaacTCGTaccGAtCAAATCaCGCACaATcGaCAgcCGATGaCGCatcAGCAgCGACCGcACTTcgcCCGt
CTCGTCGGCCATgttttgctggcgaggcttttgtaccacacactaccaccgtaagtattgcaggaggagtagcgc
acaccaaataaaagctagcttctctcggtcacccacattgccacgccagcctgtatatgcaaacacttttgtacc
ttggctttttttttattctacaccaaacaccccgaccggtagggagttaaattaatgcacgaaaccgcgaaacga
cggcacgacacaacaaacgcggcgcgacgcttcgagcacgctacggagaaacggcagctgcgtctacctggacgc
gaacatttactctgagcgcgctctcgcagcgaacgccgtccagtacgtccatggagaggatgcatctcgggtttg
gattgcagggtttttgtgccgcgtttgctgttggtttagattacgttgtgaaataaatttattcaaacttcagac
atcgtgtagatcgataaggataacaattgatgtgttttatgaatgttttgagaataagcttaaagatttagtaat
gaaatgttaagaagcgatgtcgagtgaaaaaagttagttagttggttaagtttttattgaaacccttttttatca
ggaaatggaaaacatacaaattgaaaaaaacatcggtttgtgtttataaaacactgtaatcgaagtttaatttca
ttaacaatactgtgactaacaacttacCAAAATAAGCTGAAcacccctgtatatctctatactctttactcacgt
tagcgtctgcaagtgttagaaagagacacacgagttgtattcattgtaattgcacgtgTAAAAcgAAATTggagg
AtAAAATGctctattttGAAAAgTTGATAcacgttaataaTAAAAAAATATATAcaaaatatatatttagtattt
attcttcaaaatttacttagaggaggaaaacCATTTTTTTTAAcACAATTCAATTTTTTaagaaagctgggtTCG
AATTgAGAGttttattcttcttttattagtaatcgtcataccatttatattTATTTaCAACtaaTTAtTTTaTTt
ctACTAAtttaAAAAAAATACTtacaGTTTTActtAGTGaATAtagaaaattagagcatttacatttgcacaact
ttgctttttttaaatcctatttatttaattattttatctacgtgtttcccccacctcgacaaaccttgaccgacg
gccttttggaagctgcaatgtttgcgaagcactatagagtgagagctattagtacagcgcccgcaaaacgagtgc
cccttccggtcacagaaagcctttggcgagtgtggtgtgtgtagccgccgtgtgccttgccttaaccgaaagtct
ataaatgtatcctcccgcaccgcagtgagttccattttcgcattttttgtgcgacgaacagtaccccggtgcgag
gatccgtgcacgctattgccacgtggcagcggcgaggctgacgggctacaacactatctaccaattttctgtgtg
atactttactgggtgcagtgcgtgaggtctgtttcaactccaacagcctagaaaacaaacaaaacaacaaaaaaa
cacacttaccgacatgggtttactcgcaccaaccacatcctgcgacggcgaggaagagctgcaggtacagctgcg
cagcgttatcatcacccggtcgaaggcgggtgcaacggtggacgaaataataggtacggcgagcgcgatcgagcg
ccggaggatcgtgctgcactggctgagccgcgtgctaatgtgtgtttgtgtgattgtcctctatttcactaccgt
tcacgtagacgactatcgggagctaacgggggtacacctgctggaccgattttacacccattccgcgctgctaaa
ctaccttttcgggatggagggcgtttggtgctcgaccgacggtgcacatggtttgatgctgtggttctgccggac
agcccggacgaagcacgtggtcgacatgatacaggcgcagcggtccccgcgcggcggccccggcggcagcaatta
tcgacgctatatgccacgtgcaaccggggcgccggtgaacaactttcagtactgctactcgacggccggcacgca
aatgggcggccccggcacgcaaatgggcggccccggcaccgtggaatcgcaggaccttttcggcgatatgatgcc
acagccacagccggcacggccctaccgtgtgaggcgtgcgccccgcgccgagagaagacatccgtacacgcgtcg
aagcggcggccagcagcggtccgcaggttggagacagtcccggtcggatgagcttgattttgtaagtttgtgcgg
aaatgcattccacgctggaaggtatctaatcggtgggggaattttggttcctgttctcttcctcacagtcgatgt
acggaccgtcgtaccatcgtcatcagctggtgGGAGACGACTTTTTCCTAGCCAtagctaaATGGGAgctcggat
tttcattcgatccaggtatgtgtagctgtaaatgaacgaacgcatgtgacgctcaacttacacttttcgcatctc
tgcttcgacaccaccaggccacgacatcgatatgagcggactatgcatctcaggactaacgctctcggaggctgc
caaacgcgtcgagatggcgccgttcatcgcggaccacgtgctggtgaacgtcggcacggtcgatctgctgcacgg
acgcgcgatgatcgatctgatccatgacttcaaccagctggtggcccggttccgcgagcgtaacgtggaaccgat
catgacaacgctgacaccgatcgccaacagtggcggccgcacgacgatggccgagcggctgctcaagctgaacga
gtacatctgccgcacctgtccgcgcacgatcgatctgtggaagcactttgtgcacgcggacggtacggtgcggtt
cgagtgcttccagcccggaccgcgcaaggtgtccggcagcatcatgccgcacgtgctgtggaacaagctcggccg
gcagcacatgctcggtgtgctggggaacgaaatagccgcccagctgaccaccagcgaagagtggcggtactactg
accgctcaatcgttcatttgccccgtaccacccgtccctttcgatggggggagttgggacgtgtttggtagtgtt
aagatttcctcctcgcagaacggggcctcgcaccatttcccctctccgcacgcgcacccagttcccaccgttttc
ttttaacttgttatattcgtgttattgtttcgcgttggtgaccagcgtctcttatcctttacgttgtgaataagt
cgcgcgcgcgcgtatttttgtgcttgttgtttgcttagttgcatcgcttttaatgttaacaacaaacgcggtatc
ggtgccaattgttcccaccgtatggcaacgcggcactagaacggcacactgtacaccttgaccccgggatcaagc
gcatcgtacggtgtgctgttcctgtatcaccctcgggggagtggtggtggtacggccacgctagcacgaagcagc
aagagtttgtccttccggaagacgaattggcttgatgcttcgcaacaactgtgctgggcccagatcgtgcccgta
cccgagccgcaccgttgtgacgccagaggcagttccagtttggtggttcttcagcagatcggccgatgtcttgga
gagccagtagcctcgaactcccagcaagcttcgttgcggtgcggtaactagtaaattgacttgccaacgtgtgcc
agcgaacggtcctgttgtaagtcagttgctaaaaacccaccgccccgcggtgcgaaacgttcgttgccatgggta
cggaacatggcaggcgcacgatagaaccttgagcgaacattatttatcctgatcatggtcagtttcagtacgcgc
acaccacctgtaaccaatctttatgtttatgtgtttttatagtgtctctcgtgtttgtgcacgttttgtgtcaat
aaaaattgtactacccagtgcaagtcaactgaaaacctgtgcgtgcttctgtcggaATTATTTAGCGAAATGTTT
ATGGGcGaATTTtgggtagcaccacccaacaacggatggcgtttattgtgcgaaaaaggaacgatttaatttgca
catgctcgtgagttcatattatatcctcaatacttttgatttgtgcgtgggagcagaaatactcatcgacgtatt
ttcgaatgaaTTTTTTATCTAAAAAAAgCAAACAAATAAAgAAAATtaattaaattcattgttaaaaaaagccca
tcccacGGACACTAACTTACcCGGATACTGATTctgGTAgATgATaCCATCgGCCAGccGcTTgGCCAgCTTTTT
AAAtAGAAAcCtaTTTCCtATCAgcCCaTCGTTgAGcGGTcgCATCAggGccTGCACCACCCaTTTGGctatgcg
ctgcCGGCAGCTCGATAccAGCACcTCGTTCAGCTCGATCGAGGGaCTGTACGGgCCAaggtcctGCTCcTCCcc
atcgtccgcaccgaacagggtgacgaactgcgtttgaaccagccgctcgtaacggcggtaattgtcttccgctag
ttttaccaacaaattgcgcagcctcatccgctgcctgtgcaactcacacggccacatgctgcagcgcaaatcggg
cggctgctgtgcaccagggccgacccgtggtgaacggtcgggaagcaacgcctttcgatcgagcgctggactggc
gggtgctgccctgctgctcccatactgcccctgtgcttgggtcggttcgacgctttcaatctcgtttatgattgc
tttcacctgggcctgatcttcgctccattcgaatatgtttacctcgtcctcgtccgcgggttcaaacattgcctg
tagctccttgagtatcgcatcgtccatggcatcattgcgaggccgtgggccttccatcatcgagcccgtgggacc
gtctaccgttaatggcacactgttcgacatttgtactggcgtgGTGTGTGCGATGGGTTCGTGCTTTtgcaccga
acgtttcgtactgctttcggcgtatgatgaatgttcggaggtggagtgttttcggtgaaacaattccatcttttc
ttctaagcttatctcgggcaggttgagcatcggtacggttgcatttgggaaggcaaaggattccgacgcttcacc
acaatcggtttgcacgcccacgtgacattgttctcgctttacgtatgccggttgaaactttacatcggtgagatt
cggatgaatgagtccgagggtggtttgttttctgatttctccaatcttaaacaagcaaaaggttaacattagcta
tagaagcataaaatattcgatctttttctcACCTTTTGgAGaataAAATTTTGATAcAGCGATGtAATCATaCAC
GATTGAACCTGGAAAgcagatacgagagagattcaatttagaacttttttttttgctgaaacccccacaccctcc
ttaccgctcgcatttcaatcgtttctgcacactgccgcagctcgccatccgagaacggattatcgccagggtggc
cgctgtaggacgataaccAGGTATGATAGTTTTtgcgcaaAACACGCTCCAAatagtacagatactgttggcgca
cttTCGCCgAtaAACGGTGGGCAGggagcggaatGTCcTCGATCAAGTCCTccGCGTCcgCTGCTGCGgcactga
ggcgtgactgttcctcgaccgtgggcactttgttcgagtccttcttgtacgggtcaaacacactcccgcggtagg
caaactcgaatggattcgattcgacatcgccacagtactgtttgttactcctaaaacgaaacgaaaaagaattag
tttggcactacaaaagctctggtagcgatgcgatgacacaatcgtaccattttcgcttcagcatctccaacaaaa
ttctgtaaattatcgatcggttctgaaggcgcttcggaccatgctcggagaaaagaagatccggcccgttgctat
ggaaaaagaagttgtttgtaaacaaacgcctgtcagtgcgcgctcgcgtgcattatggcgcttgtcagtgtggcg
gcgttgtgtgttttggtaacggcgcaattgaacagcactaccattccgacggcgagcgacgctacacccgaaggc
caaaggcagaaaagcgtttgcgcgttttgcgaattgtttgatgaaattattggaaaaccatgtgtggccgcacgt
gtttgtaagttcctttgcatttaaatgtttttagtacttcgtatgtaaacaccccagctcttccatcttcccacc
aggacactggaaccgaaagagctggaaagcTGCTGCAAGTACAAcaaaagcggacaaaacaaaccgaaacaaccg
cgctaccgaaatgagttcaattgtgggaaaaagtacgtcccttcgtttaatgtagccccgacggacgtaacgcca
gtgcttgtttccgccctgcactttgatgagtcggccgattccgccgatcggttGCTGGTgCCGATGATGTGGgGC
ATGGTaCCACGCTGGCACAAGGGTGACTtCCGgAAGCAcGGCCTAACcacGAACAACTGcCGGCTGGAggGTTTG
GCgtTcTCgAAACTgtacggaCCACCgCTCGCctcgggccaacggtGTGtcATAcTtTGCGaAGGtTTCTACGAA
TGGCAAACGgtaaaACCGCtgAAGcccTCCGAACGggCcGCcTTCTACgTgCAcgcGCCgCAGgcaGAgaaGGTc
AAgaTgGAgGACAAaTCCACcTGGcAGCTGGAGAcgGgAgggcaGcTgcAgtTgCTccgcATtGCcGGGCTGTTC
GATGTGTGGAAcGACGAGAACGGGGACAAACTGTACAGCTACACGGTgATCACgTTCGAAaCGgAgggtcAGTTC
gCgAgcATaCACCATCGatcgCCgGCcATtCTcGAgACCGAtGcAcAgGTGGcgGacTGGtTgGAtTTtaagcgt
GTgccaGCgAacaGAGCGcTcAATcTttTGcAACCatGCcAagCgcTgaAgTGGTACcGcGTgTCgAACgTtGTg
AACAAcTCgcGcAACAAATCGGACCAaTGCAAcAAACCGctcgagcagggcaaatcgggtgacggaagcggcaag
tctggcgtcgttccgAAAAGCAAaATGATGCAATCgTGGcTGATTGTTAAGAAGcgaaagcatgacgagggcgaa
gaacagcccccagctttggagggtacggtaaagcaggaattgaagacggaaccggtggacaagaaaccgaaaccg
gatcccgatgtgccatgaagcagataagttaccttaaattgtttatgaatttttcgagagaaataaaactctttg
atgtatgttgctacctgaattgtgttattccatcattttctctgcctcggcctccttcttggcggcgcttgtttt
gagcgctttccttgaaatgaactttagcttcaaatgctgtatgctcgccgcactgccgtcccactcttgaaacag
cttaaagttaactgcatcgcacagatcgggcagctcgatgccgcctccggtgttgaagttaagcttttccgtttc
gatcgtagttttgatcactgcctcgcgtgcagcgtgttgcgtcgcacgatgcttgccgatggattgtacgatctt
gatttgttccagctcttgatcgaaccgctgcaggtactcatccaccagcgcttcatactcggccggcatcagcgg
gtcctgccgttccagcagccgttccgcaaaccatgccagctttttaccgacgatattggcctttgctgcatgtcc
cagttttgttttctctcggttgtttattctgcgggaaaagataaagaagtgtcgattggtagcaggcgattcttg
gcatggcaggacgtatggtccgcgtacttactttttgaccttacgggtaagggctagtgttttcctacttttagg
atgtttgcatttggctaactctttgagaatggtttgcttgggctaaaaagaaaaggatacttagctcgataataa
gattataagtacagaagaggattcttaccatctttacagctgaactgaaca
 
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Enhanced BLAT Score Card

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 Mosquito EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile



  


 Gene Name: oskar
        

     Reference Genome: Anopheles gambiae
    		





 Click on individual Species and Composite eBLATs to
view eBLAT alignments.




  

    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  

  

   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  

  

    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  




 
View test species eBLAT to identify gap(s).











  

    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  

  

    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2nd or 3rd eBLAT
    
  

  

    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  

  

    
      Red
    
    
      =  
    
    
       Common to 1st, 2nd  and 3rd eBLATs
    
  

  

    
      Brown
    
    
      =  
    
    
      Common to the 1st and 2nd eBLATs
    
  

  

    
      Magenta
    
    
      =  
    
    
      Common to the 1st and 3rd eBLATs
    
  









 

    

        
 
            
              agambiae
              (Ref  Sequence)

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            21676
            1
            2167606258 

  

           
            6263
            1648
            79130
                 0 /
                 5
               

  

           
            6282
            1441
            79130
                 0 /
                 24
               


 
               
               
                 All Alignments
               
                 1st
               
                 None
               
           

   


    		
    

        
 
            
              aaegypti

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            1182
            2352
            512905 

  

           
            1226
            3039
            188790
                 719 /
                 502
               

  

           
            748
            5019
            157790
                 704 /
                 39
               


 
               
               
                 All Alignments
               
                 1st
               
                 None
               
           

   


    		
    

        
 
            
              cpipiens

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            663
            2686
            154780 

  

           
            238
            4810
            191630
                 183 /
                 0
               

  

           
            212
            4705
            206390
                 157 /
                 0
               


 
               
               
                 All Alignments
               
                 1st
               
                 None