Drosophila EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
To curate selected conserved sequences in both forward and reverse orientations:
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Conserved Sequence Block Name:
 


  

    
	

	  D.melanogaster arm Genomic EvoPrint
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Black capital letters represent bases in the D.melanogaster arm reference sequence that are conserved in the D.erecta, D.ananassae, D.grimshawi  and D.willistoni orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

    


(ORF orientation in 3' --> 5' direction)



 
tcaagtacttttgaaaactggaaatatcttaaagtaggttcgaacttcgaacttagggctcgttgttccaagccg
tgactctgcggcacccaattgtggagcaaataagaaaaacgccatatgaagggaaatgtacgagTTCTaTTGCAA
ACATTtGTtTAATTTtCCATTTcgtttacgtgggTaATATGTAAtgcatcatataatatgtttttcttgccgttt
cgttcgcattataataaatgtataatattatgcatgtatgcgtgtgtgtatgctttgtcgcggggtatggtgtgt
gagcaaatagccttctcccacggacttcagttctggaagcagaactttgacctgccgcagctcctcgtatttgtc
aagtaaaatccacaccttcgttgatctagtcaagtttcggtgatcgcgattccgggatccgggatggaatcaaag
ccggtggaagagggctattgtgcagggatgggaattcgtgtgttttatgttatggggtcgaatggatactcgacc
cttacccttagctcggcttgtcTAaCAaTCgGTATCGTACCAGGCAGCCAggTTgTTGTTGTCaTTgGGtGGCGT
cGGCATGGcgTCCAAgTCaAAGTTcAAtgcaCCgGCATCaATcTCgCCaACgTCCATGTCCATgGAaTAGGgcGA
aGTtGGTGCgccgctaggcggaatggcgccgatgttACCACCGCCGCCGCtagctCCGCCtacagctccaccatt
gccgggagcaCCGCcagCACCGCCGCCGCCcACtGGgCTGCTGATCTCcAGACCCTGCATcGAATCTATTGGTAg
AGTATCATATCCTGtGAAcaaacgagatgggcaaagaatgatagggaatattgtgattagtggagaggatttaca
atctccgccagccgtcaactggcagatggtgcgacaccttgaagtcctgcaaaagtggattcactgctgctcgct
ttaatcgggaactcatctaaaatgcatctttccaacacacttattggatttatgccgattcaaacgaaatgcaga
ctccactcgtacacgacgaccctttaacattaacctagagtatcaaacaacaaaaatctgtcgttgaatactgct
taaaaagaactaaatacgtctaaaatacgacacgacatggacgcgttattgtcgattggaattcgtcctctgaaa
cttgcatgcacacacggcttacaaactagatacgagtatatacaccataaaatatatggattgtgggtggctaaa
actatgcgattatcgcaggctacgtgacatgcagtatgaaccgaaataaagtttattactgctccttcatggagg
gagaccttaaagataaaagccgtctaatgaaaggaaacaaaatagatttatacaaaacaataaatttgcgaaatt
atcaaagaaacgtatgtgtttctttactattcacgatccttattttttaaggttgcactctgtggttatttgtgg
tagatcggtgttcgtgtgtgtgtgtagtgcaaaaatcttcaagctacgtgtaaagtccggagagatagatattct
tttccaaatgtgagagagcaggggaagtaatcccgcaaaagactgaagtttatccctattatcccttattgacat
aattggcgcccaatgtcgggcatcggatgcacaagatttggatttatcgacaaatgtttgtataccgcaaatgga
aacaggcggagttatattcacttccttcgcatgcagccgtggaactcaagggtttaacgatattagggggtaacg
agcaaggagacagagatattgagatcaagcgagggaactgggtggaagagggtttcgctcacactgaagaaacta
aagtgagcttaacgtcttagtttcgattaacaagtgcatatttgaatgatgaacagacatgataacgattaaatg
gatgcgggggtttggggctggtcccgaggatttttcgaattgtctgaacctgttaacgtttccgttggtttactt
tttagtggggttatgcaggattcttcttcttggggtgtggctcgaggggtacgatgggtacgagggtctcttctt
acgcatatgacaTACATACCTTGCTGaTGGAATGCGCGACCTCCGTGtGAACTGTGCACgCTGGGCGGACCtTGT
CCgTAcAGGCCCTCATATGCTTCtTCtGgTCCAAGCATATCCTGtgatcgatcgaattcgtgtttgtttatcggt
ttatcggtcggtttgcgtgatatgtgcgtgatcgtacgtgtgtggttgtgtggtggatgtattttttacagtttc
gttttcatttatTTtTTgTTgggATGGATcAGAAgTgAAAaGTTGTTAGGAaAGAagaagACACgcgcaaacgcc
agtttgcaagtgaatgtgagcgagaggaatagagagtggggtgaggttgttgtggtatcggggcggcgagagcga
gacagagagtgagagtcgcattgttggattgttgttgttggtgagattttggtgcagtgattatccgtcatttcg
gttgttgttgcgtttcatttaccgttgcagttgtgtttatagtgatttGTTGtTttgttttgggttgttttggtt
ttacacacacaaagtaaacataaaggaAAAaAAGAAAAgaacaaaagtaaaacaaacgtgaattaattacaaaat
caaaattaaacataaacaaagagcgcgatgacgcagcaattatacaaattgaaattcatgtaagtatgtttttgg
tcgggttgttttcggaggaatcgtggagggggtgaggttgggttgtgtggtttggggagggtatcaatcaaatat
gatcagaactaatcggaatccgtatttgtaatcggcgttcatctacaactacctacttatcgactaacatatacg
gtctatcgattggtggtttacaagaaaagcaaaaaaccgaacgaaatgaacccaaatgaaatggaaattcaaaaa
taggttatcgaaatcgtaagcaagcgatatataggtcgatacttaatctggataccattatataatgcttgacta
aagtaggttctctacaaatttacaattttatgtacagatttcgcttaacgcgctgcatttttaaatcagattcaa
tggaacacaagaagggcgtttaaaaagccggaatcccggggacgtcgaatttgcttagcctacttagcACGCACC
TGtAgaTCgGGACCCATGCCcAggTCgGCaTTGGcCCAtATGTTGTTgTCcTCGCGcAgCAGcGAgTTGGTCAgC
TCtATgGAtAgcCGCTTcTTgTAaTCCTGcGGcTTgTCCTCaCTCATgCGaaagaGaACaGCgGCggcgtatGTg
GCcACgCCtTCaTTGCGcGAgTGCAggAGATCgGTcAgcGGCCCAGTgGCGCCcTCCTGcTCgATaATcTCgGCG
CCCTCCTTgTCaGCggcgagctcacaaAGaACGCCAGCAGCcACGCGCtaaagtaagaaaatattcatagtatac
ttgagtcacaacaagataaacttcgatctcACCTGtATgTTcTCgATTTCGTTGAAcAGcAAtCGtACaAAgATC
GGTATtACCGAcTGcTGGCGaATgAGtGCcCggTTgTGaGAcTCgCGggCcAggATaTGtAgcgcccccaccgtg
CCcTCgACAATcTCCTCCATgCGaACgccgtcagcgtatGCgGAcGGCTGCTGtgaaccagtggtggctatcgag
gaacgttgctgcaaggttgcaagtataattgacgtcataattattctctccaacttatgcttccactataactaa
ctcaccctcTCTGTGTCtTGGAAgGCgCGCATaAgCagtCGcACCAGATGgtggatggccccgTGcTCcCGCAAc
GGgGCgTGATTGGCCGGACAGAGgGCCAaATTgCGtATgAGtCCaATgACgGCCTTGATcAaGGGCCAgCGtGAt
GGtGGATGcAatAGCTTtACAATcACcGAtAgtCCgTAgTTtAagCGtACgGCaTTcTGGGCcAacTCaGAGTCc
ACaTGACGcGAggtcaagTGaCGcAggGCaCAtACaGCCGGCTCGGTaATCTCtTCgCGaTCtCCaGCATTGATa
ATaGTaCggacgAGgGCgTCcACaCCgCCCACcTGacaaacggtggccttGTTgCgcTGaTTGTTgCAcGTCAgA
TTtgaaaggATacCgGCggCAcagGTgACcacgttGACATcggtcgagcccagaaccTGGACgAGaGATTGgAGc
AaaGCtTCaAggCCCTCCACCTTaGTGGCtGCATCCGAaAGaTTgCGgAgcGTCCAcaaacagTTtTGcACaAGg
CGcGGtGACATgTTaCCCAagTGCATaGCCAgcGCCTGCATtCCaCCGGCATCcACgATgGCCGGCTTgTTgCTg
GAgCAaACgGAgAGcACtTTCAGtACcCGcGAaGTGGTCCAcAgaAGCTTCTCGTAGTCgTAgGAgCGCATaATG
CGcACgAgTTCgTTgGGCCctCCgGAGGCaAGaATtATtAacTTgCTCTCcTGgTTaCCaTAgGCCAGaATttgc
aaGCAaTCtGTGACgATaGCCAgaAACTTaACgTTgtTtCgtTGCAGcAGaGTaACCATCTTcTGAAGCCcgccg
gccaggcgcacagccatcttagagCCaTCCTGgTggagcaGCAaaTTgTGcAGaGTGGTaATtGCATAGAAcAgc
ACACTcTccactggcgaggagagcAactTgacgagtgccgGgATgCCGCCaCTCTTgAAGATGGCCAgcagacCC
TGgCGATGgtgtgatAAgTTGTGCAGtGttcctACcGCtGCCTTGGTgCTCTCCAGATCgTTgCTgTTaGAgATG
GCacgcacCAAaGCGGCtACCATCTGaGGGCTgTTCATaATGGCaTGtCGcGAgGCcTCCTTCTTaGAcAgcTGg
TGgACCATCATgGCgGCCTGgGAaACtACCACCTGATCCTCaTCgTTcAGcAGcTTgATcAaCTCgGGtATGGCc
ctggttgccagctcagcgtcgtcctggtagttgatcagattgaccaccgcgtgctttagcatttgtgacggttcc
gaaagacgttgcaCtGCcGTCGGcTGttggGGATCaAactgggtgGAgGGaATCTCaATGCCCTCCTCcagggtt
tccggaAACATGGCaGCaCGtACaCGtTGgGAgCgtGTCTGGCTcaGtTGCTGgTTCATaTCgTCCACtTGgTCt
TGtGTgAAATTCTGcgGgAAACCgGTgTCCAggTCgAACATaAgtGGAtctcCCTCCATcTCcTCgTCCTCcTTG
CCaGAcAGCGATGGaACCTGGGTcACGGCaCCCGAgTGgATgCCgGAGTCgCCCAagtacgaattcTGCTGCCAC
ATgAGgGTCTGCTCCTTgGCgGAtACCATcGGCGGcAgATCaGGtGGATtgTATTGaTTattatgcgacactgca
aaagattgattgcaaaacgttttagagtgaattgacaaaaatatacactccaacttttctaactcgaatcaccga
tgtgtttcgatcatttccattgcaacttaatcgtgttataagaccccaaagaagcagaaatgaagtgtaagaata
atttttgtatgctcttctttaacttgttaacatctgtctacacattcatggtaacttttcttttttaaaaccttt
tgaagtggaaaaacgacagagtagaacggaatactgagtgcagcccaccatctacatataatgcaacgaattcgg
gtgcggggatgcacacgctttaaccctctgcaacccatttgcatgcgctttcgttaaaagatggccaaatgggaa
acgacagcgactgacagcaaagtgagcagcatcccaacagccggcgcaaaaaatgcaaaaggaaaactttgaagc
gtgacaaattgaacgctgcaggatattcccagaaagttcagggcgctgggcggaatgggtttggtgcagggggtc
agatgctcacacatgagagggtactggcaaaaggatttgtgggcgttttgtttgccacttcagtcttaattatgc
cgttccaggcccagctttttgcctttgttgttttacttatgcgcggacacagcacggccacgccccttctgtatg
cattcgtaattacaaacttcactgctcttcgccatccactctgcaatactacagtcaaatctcaatagatcgaac
acggtgctgaatataaatgactccataaaaagcagcattgaaacatgctggtaacctatggaccaggtctccaaa
tgtggtctctgagttcaacaaaatggtttagcccacagctgatgaattttgttcgctataagcacatgcgactgt
aatactgtaatcgcttttcgtttcatttcccaaatcgattaagcgttttttcttcgccatatccgtcgagtgggc
cacgcacttgaatggagtactgtgttgggatggagggcgcgggcggagcctttaattgcatgttgccgcttacta
attaaattctgcacagcagcagcgccagaaaaaagcaaaggcagaagccaagaaaaatgtgcagccaactcgact
gcgagttcgggagacggggtacgagaacaaggtccccggagaagaccaaggagcgatggcaaaagggtggcgtgg
gttggagtgccacgtgcaagtacacgagtccttgaatgtgtgtgtgcgtaagtggatagcatggggagggaatgg
agtttcaaaggatagtgagcagcggcctactcaagggggtttcggggttgtacagcaattagttgaaaactaaac
taaatacttaatagtggtcgaattaaaaggccacttcctaaatggctatgaactgttcactactgtcgtcctaga
tattgacattcctcgactttctgtggcaaaagtgatgggagttcaatgaagccaacatgcattaacgagctcctc
ccctttggtgaagtcctctcctgcgcctctgagagcctcaccaacgcgctctgcaaatcaagtgtcaaaaagaaa
tcttctttcctactccgtttactgcgtcagcggaaaagtgtaaatttcaaactccgaagtagaagggagcgcttt
tttttttgatgaatcggatataagcacaggccgctggtggttgatggcccaacaaaaaaaagatcatcaagcatt
acaagtatgtagatgtacacaaattatttgtctggggtggatggatatagttgttaccctgtattctgcagacaa
cccacaaagggaatatcagaaacaaatgacaaaagcaaatactttatgtcaaatttgccaaatttgtcaaaaaca
agcatcgctccctcatttaacgttggagaggggttgttattgtattgcgatacggggataattgtttcacagata
caatgcgctgttgcatccccttcatagggccatgtattctgactatttatcctaaatgttctaaactctagagct
accatgacttaattgcgtccattgaaacgcaatatcatctctaatttgatgaaatcggatcctgtatacaactgc
atttggactgggtatacaaaagcccaaagtggaacactctgatacacagttaactttgatgctctttgcatactc
cctggaagatgggaaagggaagagtaccgctgctggaaatACTTACTgGTtCGaTTcTGGGCTGGCATGTAACTC
ATCTTGGTGatTgaGGCGcTTTACACCACACCTgcaagaaagagacggagagtatatgagtaatgtgctggacag
tcaataacatggagttcgtgtgtgcttcggatggagaccacggaactccactaaatgggggccccggaaagaagg
gcttgttgtgtttgcagactgccaacagacgcagatatcgtccgttagtcacttattctagtcgttggtcttttt
ttttaactcatttccgctttgagatgccgaagcataatatgaaatatgctgcgtatacaaacaaacgcactaata
cattcttacgcaggtagaacgggtatttgtgggtatgtgtgtgtctacctgccgaagactttggccacgaacctt
gagttatttaattactttgtttagcactctttcaaatctcatgcactccaacaaaaaacaaaatggatttttcac
ttctctcgaaaaaggcgcagcggaaaatgcgaccgaccagcacgctcgtttaaacggaacagaatccagatgcgg
agagcgcaagcaaagcaaggcacttgcaacaccgcgcgtgcggagtgcgggaaagggacagggaaagagactggg
agagaaagtaaagggccgcggcagtgcagcatacaaatgcagtgctgcgcagagttgccacacatccaaacgatt
gtgcctacacacacatactcgcgtaggcagctcagaaagaatcccaactccatttcagttgtcgattagataaaa
cacctaacgataagcctgcctctagattcgaagaaaacgatttcctgtctgtggcattgtttacattccagcgag
caacaaaacaagcgcccgatttacgggggaggaatacataaaaatgccgtttgtgtgtatccagatcatacacac
acacatacacaggcgcacatccagcgaacccctgcccacccccgcgccgacttgtttgccatggctttccaactt
tcatggcacacagaaactttggctttccaaacggattcactaccgactaacagtactcaccgcgtccaaggaatt
taagtctgctttagagcaggatttatttatttaaaacgctataagaaacaaaataacagcgaattgtctgctcga
gaaaaactgtgtatatggcgacgaaacccaactagcgatggcctgctgctgtcccgataactcgatgggccctgt
gcgataggccaaaggaatttttcaaattttttttgttctgagaacacaaaaatctcacgaaatttgtatagcatt
tcatccttaagaaactcaattcacaatatttataatttagctaaggcgaatttatttctagttcatgttatcatg
ttatctcgaactcaccgtttatcttgtataaacatttaccaacacaagcacctgagtgtacatgagggtgtatga
caacacaggtacgaccaaaaactattgtttttgggcgacgaattaaagaaatatctatgactttactattactta
ccgcttcgaaagtaaatttatctgctcaaaggcaggttaacgcacttttgacgcacttagatatttaaattcgac
aaaaatccccgactatgaaaactgtgtatatgagcgcagaacagataaccgataactcc

  
 
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arm Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except D.erecta, D.ananassae, D.grimshawi or D.willistoni.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.


tcaagtacttttgaaaactggaaatatcttaaagtaggttcgaacttcgaacttagggctcgttgttccaagccg
tgactctgcggcacccaattgtggagcaaataagaaaaacgccatatgaagggaaatgtacgagTTCTATTGCAA
ACATTTGTTTAATTTTCCATTTCgTTtAcgTGGGTAATATGTAATGCaTcATATAATATGTTTTtCTtgccgttt
cgttcgcattataataaatgtataatattatgcatgtatgcgtgtgtgtatgctttgtcgcggggtatggtgtgt
gagcaaatagccttctcccacggacttcagttctggaagcagaactttgacctgccgcagctcctcgtatttgtc
aagtaaaatccacaccttcgttgatctagtcaagtttcggtgatcgcgattccgggatccgggatggaatcaaag
ccggtggaagagggctattgtgcagggatgggaattcgtgtgttttatgttatggggtcgaatggatactcgacc
cttacccttagctcggcttgTCTAACAaTCGGTATCGTACCAGGCAGCCAgGTTgTTGTTGTCATTGGGTGGCGT
CGGCATGGCgTCCAAgTCAAAGTTcAATGCACCgGCATCAATCTCgCCaACgTCCATGTCCATGGAATAGGGCGA
aGTtGGTGCgCCgCtaggcggaatggcgccgaTGtTACCACCGCCGCCGCtagCtCCGCCtacagctccaccatt
GCCGgGAGCACCGCCAGCACCGCCGCCGCCCACtGGGCTGCTGATCTCcAGACCCTGCATCGAATCTATTGGTAG
AGTATCATATCCTGTGAAcaaacGAGAtgggcaaagaatgatagggaatattgtgattagtggagaggatttaca
atctccgccagccgtcaactggcagatggtgcgacaccttgaagtcctgcaaaagtggattcactgctgctcgct
ttaatcgggaactcatctaaaatgcatctttccaacacacttattggatttatgccgattcaaacgaaatgcaga
ctccactcgtacacgacgaccctttaacattaacctagagtatcaaacaacaaaaatctgtcgttgaatactgct
taaaaagaactaaatacgtctaaaatacgacacgacatggacgcgttattgtcgattggaattcgtcctctgaaa
cttgcatgcacacacggcttacaaactagatacgagtatatacaccataaaatatatggattgtgggtggctaaa
actatgcgattatcgcaggctacgtgacatgcagtatgaaccgaaataaagtttattactgctccttcatggagg
gagaccttaaagataaaagccgtctaatgaaaggaaacaaaatagatttatacaaaacaataaatttgcgaaatt
atcaaagaaacgtatgtgtttctttactattcacgatccttattttttaaggttgcactctgtggttatttgtgg
tagatcggtgttcgtgtgtgtgtgtagtgcaaaaatcttcaagctacgtgtaaagtccggagagatagatattct
tttccaaatgtgagagagcaggggaagtaatcccgcaaaagactgaagtttatccctattatcccttattgacat
aattggcgcccaatgtcgggcatcggatgcacaagatttggatttatcgacaaatgtttgtataccgcaaatgga
aacaggcggagttatattcacttccttcgcatgcagccgtggaactcaagggtttaacgatattagggggtaacg
agcaaggagacagagatattgagatcaagcgagggaactgggtggaagagggtttcgctcacactgaagaaacta
aagtgagcttaacgtcttagtttcgattaacaagtgcatatttgaatgatgaacagacatgataacgattaaatg
gatgcgggggtttggggctggtcccgaggatttttcgaattgtctgaacctgttaacgtttccgttggtttactt
tttagtggggttatgcaggattcttcttcttggggtgtggctcgaggggtacgatgggtacgagggtctcttctt
acgcatatgaCATACATACCTTGCTGATGGAATGCGCGACCTCCGTGtGAACTGTGCACgCTGGGCGGACCTTGT
CCGTAcAGGCCCTCATATGCTTCTTCtGGTCCAAGCATATCCTGTGATcgatcgaattcgtgtttgtttatcggt
ttatcggtcggtttgcgtgatatgtgcgtgatcgtacgtgtgtggttgtgtggtggatgtatTTTTTacagTTTc
gTtTTcaTTTaTTTTTTgTTgGGATGGATCAGAAGTGAAAAGTTGTTAGGAAAGAAGAAGACACgCGCAaacgcc
agtttgcaagtgaatgtgagcgagaggaatagagagtggggtgaggttgttgtggtatcggggcggcGAGAGCGA
GAcAGAGAGtGAGAGtcgcattgttggattgttgttgttggtgagattTTGGTGcaGTGattatccgtcATttcg
gttgttgttgcgtttcatttaccGTTGCAGTTGTGTTTatagtgatTTGTTGTTTTGTTTTgggTTGTTTTggTT
TTACACAcacaaagtAAAcatAAAGGAAAAAAAGAAAAGAAcaaaagtaaaacaaacgtgAATTAATTACAAAAT
CAAAAtTAAACAtaaacaaagagcgcgatgacgcagcaattatacaaattgaaattcatgtaagtatgtttttgg
tcgggttgttttcggaggaatcgtggagggggtgaggttgggttgtgtggtttggggagggtatcaatcaaatat
gatcagaactaatcggaatccgtatttgtaatcggcgttcatctacaactacctacttatcgactaacatatacg
gtctatcgattggtggtttacaagaaaagcaaaaaaccgaacGAAAtgaacccaAAtGAAAtGgaaattcaAAAA
taggttatcgaaatcgtaagcaagcgatatataggtcgatacttaatctggataccattatataatgcttgacta
aagtaggttctctacaaatttacaattttatgtacagatttcgcttaacgcgctgcatttttaaatcagattcaa
tggaacacaagaagggcgtttaaaaagccggaatcccggggacgtcgaatttgcttagcctacttagCACGCACC
TGtAGATCgGGACCCATGCCCAGGTCGGCaTTGGCCCAtATGTTGTTGTCCTCGCGCAGCAGCGAgTTGGTCAgC
TCtATGGATAGcCGCTTCTTGTAaTCCTGCGGCTTGTCCTCaCTCATGCGaAAGAGaACaGCGGCGGCgTAtGTG
GCCACGCCtTCaTTGCGCGAgTGCAGgAGATCGGTcAGCGGCCCAGTGGCGCCCTCCTGcTCgATAATcTCGGCG
CCCTCCTTGTCaGCGGCgAGCTCaCAaAGAACGCCAGCAGCCACGCGCTAAagtaagaaaatattcatagtatac
ttgagtcacaacaagataaacttcgatCtCACCTGTATGTTCTCGATTTCGTTGAAcAGCAAtCGtACAAAGATC
GGTATtACCGAcTGcTGGCGaATgAGtGCCCGgTTgTGaGACTCgCGgGCCAGGATATGTAgcGCCccCACCGTG
CCCTCGACAATCTCCTCCATGCGaACgCCGTCaGCgTAtGCgGACGGCTGCTGtGAaCCaGTgGTGGCtATCGAg
GAACGTTGCTgcaaggttgcaagtataattgacgtcataattattctctccaacttatgcttccactataactaA
CTcACCCTcTCTGTGTCtTGGAAGGCgCGCATaAGCAGtCGCACCAGATGgtggATgGCcCCGTGCTCcCGCAAC
GGgGCgTGATTGGCCGGACAGAGGGCCAaATTGCGtATgAGtCCaATGACGGCCTTGATcAaGGGCCAgCGtGAT
GGTGGATGCAatAGCTTtACAATCACcGAtAGtCCGTAgTTtAagCGtACgGCATTCTGGGCCAaCTCaGAGTCc
ACaTGACGcGAgGTcAagTGaCGcAggGCaCAtACaGCCGGCTCGGTaATCTCtTCgCGATCtCCaGCATTGATa
ATaGTACGgACGAGGGCgTCcACaCCGCCCACCTGaCAaACgGTgGCCTTGTTGCGCTGATTGTTGCACGTCAGA
TTtGAaAGgATaCCgGCGGCACAGGTGACCACgTTGACATCgGTcGAgCCCAgaaccTGGACgAGaGATTGGAGC
AaaGCtTCaAGGCCCTCCACCTTaGTGGCtGCATCCGAaAGATTGCGgAgCGTCCACAAACAGTTtTGcACaAGg
CGcGGtGACATGTTaCCCAAgTGCATaGCCAgcGCCTGCATtCCaCCGGCATCcACgATgGCCGGCTTgTTGCTG
GAGCAaACgGAGAGcACtTTCAGtACcCGcGAaGTGGTCCAcAGaAGCTTCTCGTAGTCGTAGGAGCGCATaATG
CGcACgAGTTCgTTGGGCCCtCCGGAGGCaAGaATtATtAacTTGCTCTCCTGgTTaCCATAgGCCAGaATtTGC
AaGCAATCtGTGACgATaGCCAgAAACTTaACGTTGTTtCgtTGCAGCAGaGTaACCATCTTCTGAAGCCcgccg
GCCAggCGcACaGCCATCTTaGAgCCATCCTGgTGGAGCAGCAaATTGTGCAGaGTGGTaATtGCATAGAAcAgC
ACACTCTCCACtGGcGAgGAgAGCAACTTGACgAGtGCCGGgATGCCGCCaCTCTTGAAGATGGCCAgcAGaCCC
TGGCGATGgtgtgatAAgTTGTGCAGtGTtCCtACcGCtGCCTTGGTGCTCTCCAGATCGTTGCTGTTaGAGATG
GCaCGCACCAAaGCGGCtACCATCTGaGGGCTGTTCATaATGGCaTGtCGCGAGGCCTCCTTCTTaGACAGcTGg
TGgACCATCATgGCgGCCTGgGAaACtACCACCTGATCCTCATCGTTcAGCAGCTTGATCAaCTCGGGTATGGCC
CtgGTtGCCAgcTCaGCgTCgTCCTGgTAGTTgATCAgATTgACcACcGCgTGcTTtAgCATtTGtGAcGGtTCC
GAaAgaCGtTGCACtGCcGTCGGCTGtTGgGGATCAAACTGgGTgGAgGGaATCTCaATGCCCTCCTCcAGgGTt
TCcGGaAACATGGCaGCACGtACaCGTTGgGAgCGtGTCTGGCTcAGtTGCTGgTTCATATCGTCCACtTGgTCt
TGTGTGAAATTCTGcGGgAAACCgGTgTCCAggTCgAACATaAGtGGATCtCCCTCCATCTCCTCgTCCTCCTTG
CCaGAcAGCGATGGaACCTGGGTcACGGCACCCGAgTGgATGCCgGAGTCgCCCAagTAcGAaTTcTGCTGCCAC
ATgAGgGTCTGCTCCTTGGCgGAtACCATcGGCGGCAgATCaGGtGGATTgTATTGATTaTTATGcGACACTGCA
Aaagattgattgcaaaacgttttagagtgaattgacaaaaatatacactccaacttttctaactcgaatcaccga
tgtgtttcgatcatttccattgcaacttaatcgtgttataagaccccaaagaagcagaaatgaagtgtaagaata
atttttgtatgctcttctttaacttgttaacatctgtctacacattcatggtaacttttcttttttaaaaccttt
tgaagtggaaaaacgacagagtagaacggaatactgagtgcagcccaccatctacatataatgcaacgaattcgg
gtgcggggatgcacacgctttaaccctctgcaacccatttgcatgcgctttcgttaaaagatggccaaatgggAA
AcGACAGcgactgacagcaaagtgagcagcatcccaacagccggcgcaaaaaatgcaaaaggAAAActttGAAgC
GTGACAAATTGAaCGCTGCAGGATATtcccagaaagttcagggcgctgggcggaatgggtttggtgcagggggtc
agatgctcacacatgagagggtactggcaaaaggatTTgTGGGCGTTTTGTTTGCCACTTcagtCTTAATTATGC
cgttccaggcccagctttttgcctttgttgttttacttatgcgcggacacagcacggccacgccccttctgtatg
cattcgtaattacaaacttcactgctcttcgccatccactctgcaatactacagtcaaatctcaatagatcgaac
acggtgctgaatataaatgactccataaaaagcagcattgaaacatgctggtaacctatggaccaggtctccaaa
tgtggtctctgagttcaacaaaatggtttagcccacagctgatgaattttgttcgctataagcacatgcgactgt
aatactgtaatcgcttttcgtttcatttcccaaatcgattaagcgttttttcttcgccatatccgtcgagtgggc
cacgcacttgaatggagtactgtgttgggatggagggcgcgggcggagcctttaattgcatgttgccgcttacta
attaaattctgcacagcagcagcgccagaaaaaagcaaaggcagaagccaagaaaaatgtgcagccaactcgact
gcgagttcgggagacggggtacgagaacaaggtccccggagaagaccaaggagcgatggcaaaagggtggcgtgg
gttggagtgccacgtgcaagtacacgagtccttgaatgtgtgtgtgcgtaagtggatagcatggggagggaatgg
agtttcaaaggatagtgagcagcggcctactcaagggggtttcggggttgtacagcaattagttgaaaactaaac
taaatacttaatagtggtcgaattaaaaggccacttcctaaatggctatgaactgttcactactgtcgtcctaga
tattgacattcctcgactttctgtggcaaaagtgatgggagttcaatgaagccaacatgcattaacgagctcctc
ccctttggtgaagtcctctcctgcgcctctgagagcctcaccaacgcgctctgcaaatcaagtgtcaaaaagaaa
tcttctttcctactccgtttactgcgtcagcggaaaagtgtaaatttcaaactccgaagtagaagggagcgcttt
tttttttgatgaatcggatataagcacaggccgctggtggttgatggcccaacaaaaaaaagatcatcaagcatt
acaagtatgtagatgtacacaaattatttgtctggggtggatggatatagttgttaccctgtattctgcagacaa
cccacaaagggaatatcagaaacaaatgacaaaagcaaatactttatgtcaaatttgccaaatttgtcaaaaaca
agcatcgctccctcatttaacgttggagaggggttgttattgtattgcgatacggggataattgtttcacagata
caatgcgctgttgcatccccttcatagggccatgtattctgactatttatcctaaatgttctaaactctagagct
accatgacttaattgcgtccattgaaacgcaatatcatctctaatttgatgaaatcggatcctgtatacaactgc
atttggactgggtatacaaaagcccaaagtggaacactctgatacacagttaactttgatgctctttgcatactc
cctggaagatgggaaagggaagagtaccgctgctggaaaTACTTACTGGTtCGATTCTGGGCTGGCATGTAACTC
ATCTTGGTGATTgAGGCGcTTTACACCACACCTGcAAGAAagagacggagagtatatgagtaatgtgctggacag
tcaataacatggagttcgtgtgtgcttcggatggagaccacggaactccactaaatgggggccccggaaagaagg
gcttgttgtgtttgcagactgccaacagacgcagatatcgtccgttagtcacttattctagtcgttggtcttttt
ttttaactcatttccgctttgagatgccgaagcataatatgaaatatgctgcgtatacaaacaaacgcactaata
cattcttacgcaggtagaacgggtatttgtgggtatgtgtgtgtctacctgccgaagactttggccacgaacctt
gagttatttaattactttgtttagcactctttcaaatctcatgcactccaacaaaaaacaaaatggattTTTCAC
TTctctcgaaaaagGCGCAGCGgAAAATGCGaCCGACCagcacgctcgtttaaacggaacagaatccagatgcgg
agagcgcaagcaaagcaaggcacttgcaacaccgcgcgtgcggagtgcgggaaagggacagggaaagagactggg
agagaaagtaaagggccgcggcagtgcagcatacaaatgcagtgctgcgcagAGTTGCCACACatcCaaacgatt
gtgcctACACAcacatactcgcgtaggcagctcagaaagaatcccaactccatttcagttgtcgattagataaaa
cacctaacgataagcctgcctctagattcgaagaaaacgatttcctgtctgtggcattgtttacattccagcgag
caacaaaacaagcgcccgatttacgggggaggaatacataaaaatgccgtttgtgtgtatccagatCATACACAC
ACACAtACACaggcgCACAtccagcgaaccCCTgcccacccccgcgccgacttgtttgccatggctttccaactt
tcatggcacacagaaactttggctttccaaacggattcactaccgactaacagtactcaccgcgtccaaggaatt
taagtctgctttagagcaggatttatttatttaaaacgctataagaaacaaaataacagcgaattgtctgctcga
gaaaaactgtgtatatggcgacgaaacccaactagcgatggcctgctgctgtcccgataactcgatgggccctgt
gcgataggccaaaggaatttttcaaattttttttgttctgagaacacaaaaatctcacgaaatttgtatagcatt
tcatccttaagaaactcaattcacaatatttataatttagctaaggcgaatttatttctagttcatgttatcatg
ttatctcgaactcaccgtttatcttgtataaacatttaccaacacaagcacctgagtgtacatgagggtgtatga
caacacaggtacgaccaaaaactattgtttttgggcgacgaattaaagaaatatctatgactttactattactta
ccgcttcgaaagtaaatttatctgctcaaaggcaggttaacgcacttttgacgcacttagatatttaaattcgac
aaaaatccccgactatgaaaactgtgtatatgagcgcagaacagataaccgataactcct

 
75
150
225
300
375
450
525
600
675
750
825
900
975
1050
1125
1200
1275
1350
1425
1500
1575
1650
1725
1800
1875
1950
2025
2100
2175
2250
2325
2400
2475
2550
2625
2700
2775
2850
2925
3000
3075
3150
3225
3300
3375
3450
3525
3600
3675
3750
3825
3900
3975
4050
4125
4200
4275
4350
4425
4500
4575
4650
4725
4800
4875
4950
5025
5100
5175
5250
5325
5400
5475
5550
5625
5700
5775
5850
5925
6000
6075
6150
6225
6300
6375
6450
6525
6600
6675
6750
6825
6900
6975
7050
7125
7200
7275
7350
7425
7500
7575
7650
7725
7800
7875
7950
8025
8100
8175
8250
8325
8400
8475
8550
8625
8700
8775
8850
8925
9000
9075
9150
9225
9300
9375


Enhanced BLAT Score Card

 (Back to Top)





 Drosophila EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile



  


 Gene Name: arm
        

     Reference Genome: D.melanogaster
    		





 Click on individual Species and Composite eBLATs to
view eBLAT alignments.




  

    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  

  

   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  

  

    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  




 
View test species eBLAT to identify gap(s).











  

    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  

  

    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2nd or 3rd eBLAT
    
  

  

    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  

  

    
      Red
    
    
      =  
    
    
       Common to 1st, 2nd  and 3rd eBLATs
    
  

  

    
      Brown
    
    
      =  
    
    
      Common to the 1st and 2nd eBLATs
    
  

  

    
      Magenta
    
    
      =  
    
    
      Common to the 1st and 3rd eBLATs
    
  









 

    

        
 
            
              D.melanogaster
              (Ref  Sequence)

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            9360
            1
            9360044 

  

           
            180
            2407
            67210
                 0 /
                 136
               

  

           
            134
            5685
            86630
                 0 /
                 90
               


 
               
               
                 All Alignments
               
                 1st
               
                 None
               
           

   


    		
    

        
 
            
              D.sechellia

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            8617
            1
            9360134 

  

           
            103
            714
            27220
                 0 /
                 68
               

  

           
            138
            702
            57620
                 3 /
                 100
               


 
               
               
                 All Alignments
               
                 1st
               
                 None
               
           

   


    		
    

        
 
            
              D.erecta

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            8427
            87
            9360017 

  

           
            131
            2466
            67210
                 10 /
                 103
               

  

           
            127
            742
            65820
                 5 /
                 104
               


 
               
               
                 All Alignments
               
                 1st
               
                 None
               
           

   


    		
    

        
 
            
              D.simulans

        
 
             Score
             Start
             End
             Ns
             R/D
        

  

           
            6888
            1
            9360138 

  

           
            101
            2495
            27790
                 11 /
                 48
               

  

           
            172