Drosophila EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
To curate selected conserved sequences in both forward and reverse orientations:

1. Enter a short three to four character name to identify the origin of the sequences.

2. Using your cursor, highlight region of interest in the EvoPrint or EvoDifferences profile.

3. Select the "Extract CSBs" button

Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  D.melanogaster arm Genomic EvoPrint
    (Back to Top)
	
    
  
  
      Black capital letters represent bases in the D.melanogaster arm reference sequence that are conserved in the D.erecta, D.ananassae, D.grimshawi  and D.willistoni orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 3' --> 5' direction)


 tcaagtacttttgaaaactggaaatatcttaaagtaggttcgaacttcgaacttagggctcgttgttccaagccg
tgactctgcggcacccaattgtggagcaaataagaaaaacgccatatgaagggaaatgtacgagTTCTaTTGCAA
ACATTtGTtTAATTTtCCATTTcgtttacgtgggTaATATGTAAtgcatcatataatatgtttttcttgccgttt
cgttcgcattataataaatgtataatattatgcatgtatgcgtgtgtgtatgctttgtcgcggggtatggtgtgt
gagcaaatagccttctcccacggacttcagttctggaagcagaactttgacctgccgcagctcctcgtatttgtc
aagtaaaatccacaccttcgttgatctagtcaagtttcggtgatcgcgattccgggatccgggatggaatcaaag
ccggtggaagagggctattgtgcagggatgggaattcgtgtgttttatgttatggggtcgaatggatactcgacc
cttacccttagctcggcttgtcTAaCAaTCgGTATCGTACCAGGCAGCCAggTTgTTGTTGTCaTTgGGtGGCGT
cGGCATGGcgTCCAAgTCaAAGTTcAAtgcaCCgGCATCaATcTCgCCaACgTCCATGTCCATgGAaTAGGgcGA
aGTtGGTGCgccgctaggcggaatggcgccgatgttACCACCGCCGCCGCtagctCCGCCtacagctccaccatt
gccgggagcaCCGCcagCACCGCCGCCGCCcACtGGgCTGCTGATCTCcAGACCCTGCATcGAATCTATTGGTAg
AGTATCATATCCTGtGAAcaaacgagatgggcaaagaatgatagggaatattgtgattagtggagaggatttaca
atctccgccagccgtcaactggcagatggtgcgacaccttgaagtcctgcaaaagtggattcactgctgctcgct
ttaatcgggaactcatctaaaatgcatctttccaacacacttattggatttatgccgattcaaacgaaatgcaga
ctccactcgtacacgacgaccctttaacattaacctagagtatcaaacaacaaaaatctgtcgttgaatactgct
taaaaagaactaaatacgtctaaaatacgacacgacatggacgcgttattgtcgattggaattcgtcctctgaaa
cttgcatgcacacacggcttacaaactagatacgagtatatacaccataaaatatatggattgtgggtggctaaa
actatgcgattatcgcaggctacgtgacatgcagtatgaaccgaaataaagtttattactgctccttcatggagg
gagaccttaaagataaaagccgtctaatgaaaggaaacaaaatagatttatacaaaacaataaatttgcgaaatt
atcaaagaaacgtatgtgtttctttactattcacgatccttattttttaaggttgcactctgtggttatttgtgg
tagatcggtgttcgtgtgtgtgtgtagtgcaaaaatcttcaagctacgtgtaaagtccggagagatagatattct
tttccaaatgtgagagagcaggggaagtaatcccgcaaaagactgaagtttatccctattatcccttattgacat
aattggcgcccaatgtcgggcatcggatgcacaagatttggatttatcgacaaatgtttgtataccgcaaatgga
aacaggcggagttatattcacttccttcgcatgcagccgtggaactcaagggtttaacgatattagggggtaacg
agcaaggagacagagatattgagatcaagcgagggaactgggtggaagagggtttcgctcacactgaagaaacta
aagtgagcttaacgtcttagtttcgattaacaagtgcatatttgaatgatgaacagacatgataacgattaaatg
gatgcgggggtttggggctggtcccgaggatttttcgaattgtctgaacctgttaacgtttccgttggtttactt
tttagtggggttatgcaggattcttcttcttggggtgtggctcgaggggtacgatgggtacgagggtctcttctt
acgcatatgacaTACATACCTTGCTGaTGGAATGCGCGACCTCCGTGtGAACTGTGCACgCTGGGCGGACCtTGT
CCgTAcAGGCCCTCATATGCTTCtTCtGgTCCAAGCATATCCTGtgatcgatcgaattcgtgtttgtttatcggt
ttatcggtcggtttgcgtgatatgtgcgtgatcgtacgtgtgtggttgtgtggtggatgtattttttacagtttc
gttttcatttatTTtTTgTTgggATGGATcAGAAgTgAAAaGTTGTTAGGAaAGAagaagACACgcgcaaacgcc
agtttgcaagtgaatgtgagcgagaggaatagagagtggggtgaggttgttgtggtatcggggcggcgagagcga
gacagagagtgagagtcgcattgttggattgttgttgttggtgagattttggtgcagtgattatccgtcatttcg
gttgttgttgcgtttcatttaccgttgcagttgtgtttatagtgatttGTTGtTttgttttgggttgttttggtt
ttacacacacaaagtaaacataaaggaAAAaAAGAAAAgaacaaaagtaaaacaaacgtgaattaattacaaaat
caaaattaaacataaacaaagagcgcgatgacgcagcaattatacaaattgaaattcatgtaagtatgtttttgg
tcgggttgttttcggaggaatcgtggagggggtgaggttgggttgtgtggtttggggagggtatcaatcaaatat
gatcagaactaatcggaatccgtatttgtaatcggcgttcatctacaactacctacttatcgactaacatatacg
gtctatcgattggtggtttacaagaaaagcaaaaaaccgaacgaaatgaacccaaatgaaatggaaattcaaaaa
taggttatcgaaatcgtaagcaagcgatatataggtcgatacttaatctggataccattatataatgcttgacta
aagtaggttctctacaaatttacaattttatgtacagatttcgcttaacgcgctgcatttttaaatcagattcaa
tggaacacaagaagggcgtttaaaaagccggaatcccggggacgtcgaatttgcttagcctacttagcACGCACC
TGtAgaTCgGGACCCATGCCcAggTCgGCaTTGGcCCAtATGTTGTTgTCcTCGCGcAgCAGcGAgTTGGTCAgC
TCtATgGAtAgcCGCTTcTTgTAaTCCTGcGGcTTgTCCTCaCTCATgCGaaagaGaACaGCgGCggcgtatGTg
GCcACgCCtTCaTTGCGcGAgTGCAggAGATCgGTcAgcGGCCCAGTgGCGCCcTCCTGcTCgATaATcTCgGCG
CCCTCCTTgTCaGCggcgagctcacaaAGaACGCCAGCAGCcACGCGCtaaagtaagaaaatattcatagtatac
ttgagtcacaacaagataaacttcgatctcACCTGtATgTTcTCgATTTCGTTGAAcAGcAAtCGtACaAAgATC
GGTATtACCGAcTGcTGGCGaATgAGtGCcCggTTgTGaGAcTCgCGggCcAggATaTGtAgcgcccccaccgtg
CCcTCgACAATcTCCTCCATgCGaACgccgtcagcgtatGCgGAcGGCTGCTGtgaaccagtggtggctatcgag
gaacgttgctgcaaggttgcaagtataattgacgtcataattattctctccaacttatgcttccactataactaa
ctcaccctcTCTGTGTCtTGGAAgGCgCGCATaAgCagtCGcACCAGATGgtggatggccccgTGcTCcCGCAAc
GGgGCgTGATTGGCCGGACAGAGgGCCAaATTgCGtATgAGtCCaATgACgGCCTTGATcAaGGGCCAgCGtGAt
GGtGGATGcAatAGCTTtACAATcACcGAtAgtCCgTAgTTtAagCGtACgGCaTTcTGGGCcAacTCaGAGTCc
ACaTGACGcGAggtcaagTGaCGcAggGCaCAtACaGCCGGCTCGGTaATCTCtTCgCGaTCtCCaGCATTGATa
ATaGTaCggacgAGgGCgTCcACaCCgCCCACcTGacaaacggtggccttGTTgCgcTGaTTGTTgCAcGTCAgA
TTtgaaaggATacCgGCggCAcagGTgACcacgttGACATcggtcgagcccagaaccTGGACgAGaGATTGgAGc
AaaGCtTCaAggCCCTCCACCTTaGTGGCtGCATCCGAaAGaTTgCGgAgcGTCCAcaaacagTTtTGcACaAGg
CGcGGtGACATgTTaCCCAagTGCATaGCCAgcGCCTGCATtCCaCCGGCATCcACgATgGCCGGCTTgTTgCTg
GAgCAaACgGAgAGcACtTTCAGtACcCGcGAaGTGGTCCAcAgaAGCTTCTCGTAGTCgTAgGAgCGCATaATG
CGcACgAgTTCgTTgGGCCctCCgGAGGCaAGaATtATtAacTTgCTCTCcTGgTTaCCaTAgGCCAGaATttgc
aaGCAaTCtGTGACgATaGCCAgaAACTTaACgTTgtTtCgtTGCAGcAGaGTaACCATCTTcTGAAGCCcgccg
gccaggcgcacagccatcttagagCCaTCCTGgTggagcaGCAaaTTgTGcAGaGTGGTaATtGCATAGAAcAgc
ACACTcTccactggcgaggagagcAactTgacgagtgccgGgATgCCGCCaCTCTTgAAGATGGCCAgcagacCC
TGgCGATGgtgtgatAAgTTGTGCAGtGttcctACcGCtGCCTTGGTgCTCTCCAGATCgTTgCTgTTaGAgATG
GCacgcacCAAaGCGGCtACCATCTGaGGGCTgTTCATaATGGCaTGtCGcGAgGCcTCCTTCTTaGAcAgcTGg
TGgACCATCATgGCgGCCTGgGAaACtACCACCTGATCCTCaTCgTTcAGcAGcTTgATcAaCTCgGGtATGGCc
ctggttgccagctcagcgtcgtcctggtagttgatcagattgaccaccgcgtgctttagcatttgtgacggttcc
gaaagacgttgcaCtGCcGTCGGcTGttggGGATCaAactgggtgGAgGGaATCTCaATGCCCTCCTCcagggtt
tccggaAACATGGCaGCaCGtACaCGtTGgGAgCgtGTCTGGCTcaGtTGCTGgTTCATaTCgTCCACtTGgTCt
TGtGTgAAATTCTGcgGgAAACCgGTgTCCAggTCgAACATaAgtGGAtctcCCTCCATcTCcTCgTCCTCcTTG
CCaGAcAGCGATGGaACCTGGGTcACGGCaCCCGAgTGgATgCCgGAGTCgCCCAagtacgaattcTGCTGCCAC
ATgAGgGTCTGCTCCTTgGCgGAtACCATcGGCGGcAgATCaGGtGGATtgTATTGaTTattatgcgacactgca
aaagattgattgcaaaacgttttagagtgaattgacaaaaatatacactccaacttttctaactcgaatcaccga
tgtgtttcgatcatttccattgcaacttaatcgtgttataagaccccaaagaagcagaaatgaagtgtaagaata
atttttgtatgctcttctttaacttgttaacatctgtctacacattcatggtaacttttcttttttaaaaccttt
tgaagtggaaaaacgacagagtagaacggaatactgagtgcagcccaccatctacatataatgcaacgaattcgg
gtgcggggatgcacacgctttaaccctctgcaacccatttgcatgcgctttcgttaaaagatggccaaatgggaa
acgacagcgactgacagcaaagtgagcagcatcccaacagccggcgcaaaaaatgcaaaaggaaaactttgaagc
gtgacaaattgaacgctgcaggatattcccagaaagttcagggcgctgggcggaatgggtttggtgcagggggtc
agatgctcacacatgagagggtactggcaaaaggatttgtgggcgttttgtttgccacttcagtcttaattatgc
cgttccaggcccagctttttgcctttgttgttttacttatgcgcggacacagcacggccacgccccttctgtatg
cattcgtaattacaaacttcactgctcttcgccatccactctgcaatactacagtcaaatctcaatagatcgaac
acggtgctgaatataaatgactccataaaaagcagcattgaaacatgctggtaacctatggaccaggtctccaaa
tgtggtctctgagttcaacaaaatggtttagcccacagctgatgaattttgttcgctataagcacatgcgactgt
aatactgtaatcgcttttcgtttcatttcccaaatcgattaagcgttttttcttcgccatatccgtcgagtgggc
cacgcacttgaatggagtactgtgttgggatggagggcgcgggcggagcctttaattgcatgttgccgcttacta
attaaattctgcacagcagcagcgccagaaaaaagcaaaggcagaagccaagaaaaatgtgcagccaactcgact
gcgagttcgggagacggggtacgagaacaaggtccccggagaagaccaaggagcgatggcaaaagggtggcgtgg
gttggagtgccacgtgcaagtacacgagtccttgaatgtgtgtgtgcgtaagtggatagcatggggagggaatgg
agtttcaaaggatagtgagcagcggcctactcaagggggtttcggggttgtacagcaattagttgaaaactaaac
taaatacttaatagtggtcgaattaaaaggccacttcctaaatggctatgaactgttcactactgtcgtcctaga
tattgacattcctcgactttctgtggcaaaagtgatgggagttcaatgaagccaacatgcattaacgagctcctc
ccctttggtgaagtcctctcctgcgcctctgagagcctcaccaacgcgctctgcaaatcaagtgtcaaaaagaaa
tcttctttcctactccgtttactgcgtcagcggaaaagtgtaaatttcaaactccgaagtagaagggagcgcttt
tttttttgatgaatcggatataagcacaggccgctggtggttgatggcccaacaaaaaaaagatcatcaagcatt
acaagtatgtagatgtacacaaattatttgtctggggtggatggatatagttgttaccctgtattctgcagacaa
cccacaaagggaatatcagaaacaaatgacaaaagcaaatactttatgtcaaatttgccaaatttgtcaaaaaca
agcatcgctccctcatttaacgttggagaggggttgttattgtattgcgatacggggataattgtttcacagata
caatgcgctgttgcatccccttcatagggccatgtattctgactatttatcctaaatgttctaaactctagagct
accatgacttaattgcgtccattgaaacgcaatatcatctctaatttgatgaaatcggatcctgtatacaactgc
atttggactgggtatacaaaagcccaaagtggaacactctgatacacagttaactttgatgctctttgcatactc
cctggaagatgggaaagggaagagtaccgctgctggaaatACTTACTgGTtCGaTTcTGGGCTGGCATGTAACTC
ATCTTGGTGatTgaGGCGcTTTACACCACACCTgcaagaaagagacggagagtatatgagtaatgtgctggacag
tcaataacatggagttcgtgtgtgcttcggatggagaccacggaactccactaaatgggggccccggaaagaagg
gcttgttgtgtttgcagactgccaacagacgcagatatcgtccgttagtcacttattctagtcgttggtcttttt
ttttaactcatttccgctttgagatgccgaagcataatatgaaatatgctgcgtatacaaacaaacgcactaata
cattcttacgcaggtagaacgggtatttgtgggtatgtgtgtgtctacctgccgaagactttggccacgaacctt
gagttatttaattactttgtttagcactctttcaaatctcatgcactccaacaaaaaacaaaatggatttttcac
ttctctcgaaaaaggcgcagcggaaaatgcgaccgaccagcacgctcgtttaaacggaacagaatccagatgcgg
agagcgcaagcaaagcaaggcacttgcaacaccgcgcgtgcggagtgcgggaaagggacagggaaagagactggg
agagaaagtaaagggccgcggcagtgcagcatacaaatgcagtgctgcgcagagttgccacacatccaaacgatt
gtgcctacacacacatactcgcgtaggcagctcagaaagaatcccaactccatttcagttgtcgattagataaaa
cacctaacgataagcctgcctctagattcgaagaaaacgatttcctgtctgtggcattgtttacattccagcgag
caacaaaacaagcgcccgatttacgggggaggaatacataaaaatgccgtttgtgtgtatccagatcatacacac
acacatacacaggcgcacatccagcgaacccctgcccacccccgcgccgacttgtttgccatggctttccaactt
tcatggcacacagaaactttggctttccaaacggattcactaccgactaacagtactcaccgcgtccaaggaatt
taagtctgctttagagcaggatttatttatttaaaacgctataagaaacaaaataacagcgaattgtctgctcga
gaaaaactgtgtatatggcgacgaaacccaactagcgatggcctgctgctgtcccgataactcgatgggccctgt
gcgataggccaaaggaatttttcaaattttttttgttctgagaacacaaaaatctcacgaaatttgtatagcatt
tcatccttaagaaactcaattcacaatatttataatttagctaaggcgaatttatttctagttcatgttatcatg
ttatctcgaactcaccgtttatcttgtataaacatttaccaacacaagcacctgagtgtacatgagggtgtatga
caacacaggtacgaccaaaaactattgtttttgggcgacgaattaaagaaatatctatgactttactattactta
ccgcttcgaaagtaaatttatctgctcaaaggcaggttaacgcacttttgacgcacttagatatttaaattcgac
aaaaatccccgactatgaaaactgtgtatatgagcgcagaacagataaccgataactcc
  
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arm Genomic Evodifferences Profile - Relaxed EvoPrint

 (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except D.erecta, D.ananassae, D.grimshawi or D.willistoni.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

tcaagtacttttgaaaactggaaatatcttaaagtaggttcgaacttcgaacttagggctcgttgttccaagccg
tgactctgcggcacccaattgtggagcaaataagaaaaacgccatatgaagggaaatgtacgagTTCTATTGCAA
ACATTTGTTTAATTTTCCATTTCgTTtAcgTGGGTAATATGTAATGCaTcATATAATATGTTTTtCTtgccgttt
cgttcgcattataataaatgtataatattatgcatgtatgcgtgtgtgtatgctttgtcgcggggtatggtgtgt
gagcaaatagccttctcccacggacttcagttctggaagcagaactttgacctgccgcagctcctcgtatttgtc
aagtaaaatccacaccttcgttgatctagtcaagtttcggtgatcgcgattccgggatccgggatggaatcaaag
ccggtggaagagggctattgtgcagggatgggaattcgtgtgttttatgttatggggtcgaatggatactcgacc
cttacccttagctcggcttgTCTAACAaTCGGTATCGTACCAGGCAGCCAgGTTgTTGTTGTCATTGGGTGGCGT
CGGCATGGCgTCCAAgTCAAAGTTcAATGCACCgGCATCAATCTCgCCaACgTCCATGTCCATGGAATAGGGCGA
aGTtGGTGCgCCgCtaggcggaatggcgccgaTGtTACCACCGCCGCCGCtagCtCCGCCtacagctccaccatt
GCCGgGAGCACCGCCAGCACCGCCGCCGCCCACtGGGCTGCTGATCTCcAGACCCTGCATCGAATCTATTGGTAG
AGTATCATATCCTGTGAAcaaacGAGAtgggcaaagaatgatagggaatattgtgattagtggagaggatttaca
atctccgccagccgtcaactggcagatggtgcgacaccttgaagtcctgcaaaagtggattcactgctgctcgct
ttaatcgggaactcatctaaaatgcatctttccaacacacttattggatttatgccgattcaaacgaaatgcaga
ctccactcgtacacgacgaccctttaacattaacctagagtatcaaacaacaaaaatctgtcgttgaatactgct
taaaaagaactaaatacgtctaaaatacgacacgacatggacgcgttattgtcgattggaattcgtcctctgaaa
cttgcatgcacacacggcttacaaactagatacgagtatatacaccataaaatatatggattgtgggtggctaaa
actatgcgattatcgcaggctacgtgacatgcagtatgaaccgaaataaagtttattactgctccttcatggagg
gagaccttaaagataaaagccgtctaatgaaaggaaacaaaatagatttatacaaaacaataaatttgcgaaatt
atcaaagaaacgtatgtgtttctttactattcacgatccttattttttaaggttgcactctgtggttatttgtgg
tagatcggtgttcgtgtgtgtgtgtagtgcaaaaatcttcaagctacgtgtaaagtccggagagatagatattct
tttccaaatgtgagagagcaggggaagtaatcccgcaaaagactgaagtttatccctattatcccttattgacat
aattggcgcccaatgtcgggcatcggatgcacaagatttggatttatcgacaaatgtttgtataccgcaaatgga
aacaggcggagttatattcacttccttcgcatgcagccgtggaactcaagggtttaacgatattagggggtaacg
agcaaggagacagagatattgagatcaagcgagggaactgggtggaagagggtttcgctcacactgaagaaacta
aagtgagcttaacgtcttagtttcgattaacaagtgcatatttgaatgatgaacagacatgataacgattaaatg
gatgcgggggtttggggctggtcccgaggatttttcgaattgtctgaacctgttaacgtttccgttggtttactt
tttagtggggttatgcaggattcttcttcttggggtgtggctcgaggggtacgatgggtacgagggtctcttctt
acgcatatgaCATACATACCTTGCTGATGGAATGCGCGACCTCCGTGtGAACTGTGCACgCTGGGCGGACCTTGT
CCGTAcAGGCCCTCATATGCTTCTTCtGGTCCAAGCATATCCTGTGATcgatcgaattcgtgtttgtttatcggt
ttatcggtcggtttgcgtgatatgtgcgtgatcgtacgtgtgtggttgtgtggtggatgtatTTTTTacagTTTc
gTtTTcaTTTaTTTTTTgTTgGGATGGATCAGAAGTGAAAAGTTGTTAGGAAAGAAGAAGACACgCGCAaacgcc
agtttgcaagtgaatgtgagcgagaggaatagagagtggggtgaggttgttgtggtatcggggcggcGAGAGCGA
GAcAGAGAGtGAGAGtcgcattgttggattgttgttgttggtgagattTTGGTGcaGTGattatccgtcATttcg
gttgttgttgcgtttcatttaccGTTGCAGTTGTGTTTatagtgatTTGTTGTTTTGTTTTgggTTGTTTTggTT
TTACACAcacaaagtAAAcatAAAGGAAAAAAAGAAAAGAAcaaaagtaaaacaaacgtgAATTAATTACAAAAT
CAAAAtTAAACAtaaacaaagagcgcgatgacgcagcaattatacaaattgaaattcatgtaagtatgtttttgg
tcgggttgttttcggaggaatcgtggagggggtgaggttgggttgtgtggtttggggagggtatcaatcaaatat
gatcagaactaatcggaatccgtatttgtaatcggcgttcatctacaactacctacttatcgactaacatatacg
gtctatcgattggtggtttacaagaaaagcaaaaaaccgaacGAAAtgaacccaAAtGAAAtGgaaattcaAAAA
taggttatcgaaatcgtaagcaagcgatatataggtcgatacttaatctggataccattatataatgcttgacta
aagtaggttctctacaaatttacaattttatgtacagatttcgcttaacgcgctgcatttttaaatcagattcaa
tggaacacaagaagggcgtttaaaaagccggaatcccggggacgtcgaatttgcttagcctacttagCACGCACC
TGtAGATCgGGACCCATGCCCAGGTCGGCaTTGGCCCAtATGTTGTTGTCCTCGCGCAGCAGCGAgTTGGTCAgC
TCtATGGATAGcCGCTTCTTGTAaTCCTGCGGCTTGTCCTCaCTCATGCGaAAGAGaACaGCGGCGGCgTAtGTG
GCCACGCCtTCaTTGCGCGAgTGCAGgAGATCGGTcAGCGGCCCAGTGGCGCCCTCCTGcTCgATAATcTCGGCG
CCCTCCTTGTCaGCGGCgAGCTCaCAaAGAACGCCAGCAGCCACGCGCTAAagtaagaaaatattcatagtatac
ttgagtcacaacaagataaacttcgatCtCACCTGTATGTTCTCGATTTCGTTGAAcAGCAAtCGtACAAAGATC
GGTATtACCGAcTGcTGGCGaATgAGtGCCCGgTTgTGaGACTCgCGgGCCAGGATATGTAgcGCCccCACCGTG
CCCTCGACAATCTCCTCCATGCGaACgCCGTCaGCgTAtGCgGACGGCTGCTGtGAaCCaGTgGTGGCtATCGAg
GAACGTTGCTgcaaggttgcaagtataattgacgtcataattattctctccaacttatgcttccactataactaA
CTcACCCTcTCTGTGTCtTGGAAGGCgCGCATaAGCAGtCGCACCAGATGgtggATgGCcCCGTGCTCcCGCAAC
GGgGCgTGATTGGCCGGACAGAGGGCCAaATTGCGtATgAGtCCaATGACGGCCTTGATcAaGGGCCAgCGtGAT
GGTGGATGCAatAGCTTtACAATCACcGAtAGtCCGTAgTTtAagCGtACgGCATTCTGGGCCAaCTCaGAGTCc
ACaTGACGcGAgGTcAagTGaCGcAggGCaCAtACaGCCGGCTCGGTaATCTCtTCgCGATCtCCaGCATTGATa
ATaGTACGgACGAGGGCgTCcACaCCGCCCACCTGaCAaACgGTgGCCTTGTTGCGCTGATTGTTGCACGTCAGA
TTtGAaAGgATaCCgGCGGCACAGGTGACCACgTTGACATCgGTcGAgCCCAgaaccTGGACgAGaGATTGGAGC
AaaGCtTCaAGGCCCTCCACCTTaGTGGCtGCATCCGAaAGATTGCGgAgCGTCCACAAACAGTTtTGcACaAGg
CGcGGtGACATGTTaCCCAAgTGCATaGCCAgcGCCTGCATtCCaCCGGCATCcACgATgGCCGGCTTgTTGCTG
GAGCAaACgGAGAGcACtTTCAGtACcCGcGAaGTGGTCCAcAGaAGCTTCTCGTAGTCGTAGGAGCGCATaATG
CGcACgAGTTCgTTGGGCCCtCCGGAGGCaAGaATtATtAacTTGCTCTCCTGgTTaCCATAgGCCAGaATtTGC
AaGCAATCtGTGACgATaGCCAgAAACTTaACGTTGTTtCgtTGCAGCAGaGTaACCATCTTCTGAAGCCcgccg
GCCAggCGcACaGCCATCTTaGAgCCATCCTGgTGGAGCAGCAaATTGTGCAGaGTGGTaATtGCATAGAAcAgC
ACACTCTCCACtGGcGAgGAgAGCAACTTGACgAGtGCCGGgATGCCGCCaCTCTTGAAGATGGCCAgcAGaCCC
TGGCGATGgtgtgatAAgTTGTGCAGtGTtCCtACcGCtGCCTTGGTGCTCTCCAGATCGTTGCTGTTaGAGATG
GCaCGCACCAAaGCGGCtACCATCTGaGGGCTGTTCATaATGGCaTGtCGCGAGGCCTCCTTCTTaGACAGcTGg
TGgACCATCATgGCgGCCTGgGAaACtACCACCTGATCCTCATCGTTcAGCAGCTTGATCAaCTCGGGTATGGCC
CtgGTtGCCAgcTCaGCgTCgTCCTGgTAGTTgATCAgATTgACcACcGCgTGcTTtAgCATtTGtGAcGGtTCC
GAaAgaCGtTGCACtGCcGTCGGCTGtTGgGGATCAAACTGgGTgGAgGGaATCTCaATGCCCTCCTCcAGgGTt
TCcGGaAACATGGCaGCACGtACaCGTTGgGAgCGtGTCTGGCTcAGtTGCTGgTTCATATCGTCCACtTGgTCt
TGTGTGAAATTCTGcGGgAAACCgGTgTCCAggTCgAACATaAGtGGATCtCCCTCCATCTCCTCgTCCTCCTTG
CCaGAcAGCGATGGaACCTGGGTcACGGCACCCGAgTGgATGCCgGAGTCgCCCAagTAcGAaTTcTGCTGCCAC
ATgAGgGTCTGCTCCTTGGCgGAtACCATcGGCGGCAgATCaGGtGGATTgTATTGATTaTTATGcGACACTGCA
Aaagattgattgcaaaacgttttagagtgaattgacaaaaatatacactccaacttttctaactcgaatcaccga
tgtgtttcgatcatttccattgcaacttaatcgtgttataagaccccaaagaagcagaaatgaagtgtaagaata
atttttgtatgctcttctttaacttgttaacatctgtctacacattcatggtaacttttcttttttaaaaccttt
tgaagtggaaaaacgacagagtagaacggaatactgagtgcagcccaccatctacatataatgcaacgaattcgg
gtgcggggatgcacacgctttaaccctctgcaacccatttgcatgcgctttcgttaaaagatggccaaatgggAA
AcGACAGcgactgacagcaaagtgagcagcatcccaacagccggcgcaaaaaatgcaaaaggAAAActttGAAgC
GTGACAAATTGAaCGCTGCAGGATATtcccagaaagttcagggcgctgggcggaatgggtttggtgcagggggtc
agatgctcacacatgagagggtactggcaaaaggatTTgTGGGCGTTTTGTTTGCCACTTcagtCTTAATTATGC
cgttccaggcccagctttttgcctttgttgttttacttatgcgcggacacagcacggccacgccccttctgtatg
cattcgtaattacaaacttcactgctcttcgccatccactctgcaatactacagtcaaatctcaatagatcgaac
acggtgctgaatataaatgactccataaaaagcagcattgaaacatgctggtaacctatggaccaggtctccaaa
tgtggtctctgagttcaacaaaatggtttagcccacagctgatgaattttgttcgctataagcacatgcgactgt
aatactgtaatcgcttttcgtttcatttcccaaatcgattaagcgttttttcttcgccatatccgtcgagtgggc
cacgcacttgaatggagtactgtgttgggatggagggcgcgggcggagcctttaattgcatgttgccgcttacta
attaaattctgcacagcagcagcgccagaaaaaagcaaaggcagaagccaagaaaaatgtgcagccaactcgact
gcgagttcgggagacggggtacgagaacaaggtccccggagaagaccaaggagcgatggcaaaagggtggcgtgg
gttggagtgccacgtgcaagtacacgagtccttgaatgtgtgtgtgcgtaagtggatagcatggggagggaatgg
agtttcaaaggatagtgagcagcggcctactcaagggggtttcggggttgtacagcaattagttgaaaactaaac
taaatacttaatagtggtcgaattaaaaggccacttcctaaatggctatgaactgttcactactgtcgtcctaga
tattgacattcctcgactttctgtggcaaaagtgatgggagttcaatgaagccaacatgcattaacgagctcctc
ccctttggtgaagtcctctcctgcgcctctgagagcctcaccaacgcgctctgcaaatcaagtgtcaaaaagaaa
tcttctttcctactccgtttactgcgtcagcggaaaagtgtaaatttcaaactccgaagtagaagggagcgcttt
tttttttgatgaatcggatataagcacaggccgctggtggttgatggcccaacaaaaaaaagatcatcaagcatt
acaagtatgtagatgtacacaaattatttgtctggggtggatggatatagttgttaccctgtattctgcagacaa
cccacaaagggaatatcagaaacaaatgacaaaagcaaatactttatgtcaaatttgccaaatttgtcaaaaaca
agcatcgctccctcatttaacgttggagaggggttgttattgtattgcgatacggggataattgtttcacagata
caatgcgctgttgcatccccttcatagggccatgtattctgactatttatcctaaatgttctaaactctagagct
accatgacttaattgcgtccattgaaacgcaatatcatctctaatttgatgaaatcggatcctgtatacaactgc
atttggactgggtatacaaaagcccaaagtggaacactctgatacacagttaactttgatgctctttgcatactc
cctggaagatgggaaagggaagagtaccgctgctggaaaTACTTACTGGTtCGATTCTGGGCTGGCATGTAACTC
ATCTTGGTGATTgAGGCGcTTTACACCACACCTGcAAGAAagagacggagagtatatgagtaatgtgctggacag
tcaataacatggagttcgtgtgtgcttcggatggagaccacggaactccactaaatgggggccccggaaagaagg
gcttgttgtgtttgcagactgccaacagacgcagatatcgtccgttagtcacttattctagtcgttggtcttttt
ttttaactcatttccgctttgagatgccgaagcataatatgaaatatgctgcgtatacaaacaaacgcactaata
cattcttacgcaggtagaacgggtatttgtgggtatgtgtgtgtctacctgccgaagactttggccacgaacctt
gagttatttaattactttgtttagcactctttcaaatctcatgcactccaacaaaaaacaaaatggattTTTCAC
TTctctcgaaaaagGCGCAGCGgAAAATGCGaCCGACCagcacgctcgtttaaacggaacagaatccagatgcgg
agagcgcaagcaaagcaaggcacttgcaacaccgcgcgtgcggagtgcgggaaagggacagggaaagagactggg
agagaaagtaaagggccgcggcagtgcagcatacaaatgcagtgctgcgcagAGTTGCCACACatcCaaacgatt
gtgcctACACAcacatactcgcgtaggcagctcagaaagaatcccaactccatttcagttgtcgattagataaaa
cacctaacgataagcctgcctctagattcgaagaaaacgatttcctgtctgtggcattgtttacattccagcgag
caacaaaacaagcgcccgatttacgggggaggaatacataaaaatgccgtttgtgtgtatccagatCATACACAC
ACACAtACACaggcgCACAtccagcgaaccCCTgcccacccccgcgccgacttgtttgccatggctttccaactt
tcatggcacacagaaactttggctttccaaacggattcactaccgactaacagtactcaccgcgtccaaggaatt
taagtctgctttagagcaggatttatttatttaaaacgctataagaaacaaaataacagcgaattgtctgctcga
gaaaaactgtgtatatggcgacgaaacccaactagcgatggcctgctgctgtcccgataactcgatgggccctgt
gcgataggccaaaggaatttttcaaattttttttgttctgagaacacaaaaatctcacgaaatttgtatagcatt
tcatccttaagaaactcaattcacaatatttataatttagctaaggcgaatttatttctagttcatgttatcatg
ttatctcgaactcaccgtttatcttgtataaacatttaccaacacaagcacctgagtgtacatgagggtgtatga
caacacaggtacgaccaaaaactattgtttttgggcgacgaattaaagaaatatctatgactttactattactta
ccgcttcgaaagtaaatttatctgctcaaaggcaggttaacgcacttttgacgcacttagatatttaaattcgac
aaaaatccccgactatgaaaactgtgtatatgagcgcagaacagataaccgataactcct
  75
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375
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825
900
975
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1125
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1350
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1950
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2100
2175
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2325
2400
2475
2550
2625
2700
2775
2850
2925
3000
3075
3150
3225
3300
3375
3450
3525
3600
3675
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3825
3900
3975
4050
4125
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4275
4350
4425
4500
4575
4650
4725
4800
4875
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5100
5175
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5325
5400
5475
5550
5625
5700
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6000
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6150
6225
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6375
6450
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6600
6675
6750
6825
6900
6975
7050
7125
7200
7275
7350
7425
7500
7575
7650
7725
7800
7875
7950
8025
8100
8175
8250
8325
8400
8475
8550
8625
8700
8775
8850
8925
9000
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9150
9225
9300
9375

Enhanced BLAT Score Card

 (Back to Top)


 Drosophila EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: arm
        

     Reference Genome: D.melanogaster
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              D.melanogaster
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            9360
            1
            9360 0 44 
  
           
            180
            2407
            6721 0 
                 0 /
                 136
               
  
           
            134
            5685
            8663 0 
                 0 /
                 90
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.sechellia
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            8617
            1
            9360 1 34 
  
           
            103
            714
            2722 0 
                 0 /
                 68
               
  
           
            138
            702
            5762 0 
                 3 /
                 100
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.erecta
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            8427
            87
            9360 0 17 
  
           
            131
            2466
            6721 0 
                 10 /
                 103
               
  
           
            127
            742
            6582 0 
                 5 /
                 104
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.simulans
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            6888
            1
            9360 1 38 
  
           
            101
            2495
            2779 0 
                 11 /
                 48
               
  
           
            172
            684
            5762 0 
                 3 /
                 127
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              D.yakuba
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            6143
            2449
            9360 2 21 
  
           
            184
            2497
            6595 0 
                 5 /
                 153
               
  
           
            149
            1396
            6408 0 
                 82 /
                 41
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.ananassae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4028
            127
            9329 0  
  
           
            103
            708
            2722 0 
                 43 /
                 60
               
  
           
            112
            5898
            8873 0 
                 44 /
                 68
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.pseudoobscura
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2919
            126
            8105 1  
  
           
            139
            2600
            8634 0 
                 99 /
                 40
               
  
           
            86
            246
            6037 0 
                 39 /
                 47
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.persimilis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2761
            2072
            8112 0  
  
           
            241
            545
            887 0 
                 241 /
                 0
               
  
           
            94
            201
            3158 0 
                 80 /
                 14
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              D.grimshawi
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2298
            140
            7759 0  
  
           
            158
            2468
            8648 0 
                 103 /
                 0
               
  
           
            142
            712
            8659 0 
                 67 /
                 20
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.willistoni
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2293
            140
            8213 0 24 
  
           
            153
            699
            3000 0 
                 110 /
                 9
               
  
           
            122
            712
            5715 0 
                 65 /
                 23
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.virilis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2239
            140
            7758 1  
  
           
            208
            2479
            8636 0 
                 134 /
                 55
               
  
           
            169
            704
            8644 0 
                 150 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.mojavensis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            1968
            140
            7766 1  
  
           
            211
            2245
            2999 0 
                 131 /
                 0
               
  
           
            175
            750
            2720 0 
                 60 /
                 35
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
D.melanogaster arm Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the D.melanogaster arm reference sequence that are conserved in the D.erecta, D.ananassae, D.grimshawi and D.willistoni orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Drosophila EvoPrinterHD - EvoPrint and EvoDifferences Profile

D.melanogaster arm Genomic EvoPrint (Back to Top)

arm Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Enhanced BLAT Score Card (Back to Top)

Drosophila EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile
