Drosophila EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
To curate selected conserved sequences in both forward and reverse orientations:

1. Enter a short three to four character name to identify the origin of the sequences.

2. Using your cursor, highlight region of interest in the EvoPrint or EvoDifferences profile.

3. Select the "Extract CSBs" button

Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  D.melanogaster aubergine Genomic EvoPrint
    (Back to Top)
	
    
  
  
      Black capital letters represent bases in the D.melanogaster aubergine reference sequence that are conserved in the D.simulans, D.sechellia, D.yakuba, D.erecta, D.ananassae  and D.pseudoobscura orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 3' --> 5' direction)


 taggattaaaacagcattgcacgtgttcggcaacaattgaaatttatatgtaattgtgcattggaaaaagttgca
gtgaattattaaattgtatattgtgttaattgtaaattgtgttaacttatttactaagctcatttcatacgaata
tatgcattttccagcaacggaactttatagacaaaaacatttacatatttaaaagaaacaacgattatttcagat
tggtagacaataaatgtgcaatacctttattaaattcaaatgatgtacatatctacatacatatatcaaatcgta
aaattgttaacgcatttaatgcaagtcatagttttacaaaaagtacaattgattctgcagtcctgctgaaggcgc
acgattaatggatTCgGCtACgAgGAAaGCcAatTTgTGgGCgTAaTGgCAgACaGcgGggactcgtatgGTtCC
gctgtAATTgTAgTACAtaTGGGTCATcttataggagagcATcTGCAgctTaTCgGCgtttAGTCCCATGTtgtc
agaaataacaTTGTAgcTgGTaGGCGAcACaGTTCCtatcCGaACaGccTGgGACACtAggAAGAAGTCgTAgCG
cTCtGGcAagGTaATaACgTCaTCgACtacaGTgcccggaactgggttgcgatgcccagtaaagtagcgagaatt
aatgcgcttggatacaattATAaatGtCAtgCGaCAGCCcTCctgtttgccagctGatTTGTAAATtTCgTCgAG
cctgtcctttagggtgTTCACctcgctgtttaccACCTGgTagAGcTGaCCaTCgCCaACACCgTCgCgaAAgAA
gAGaATgCgCTCtGGcAAagaaCgGTGtTGcTCCtgatAcGaccTcAGgGCgcAcGcCATgTTcAccGACATcTG
cTCgGACAacTCtTGGcCcttaatgTGtTCgtTtACgGtgGAGAAGTAGCGgaaaGActcctTCtgGTCCATgGT
tGCaACgAaaGCcCCATAtGACTTGTTcttattcttcggtGAATGgCAgACATCgAAaCCaACaGTCATcAgacc
gtggAggGggAtcactacctgCCAgGGAGCtCCCATCAatTTGGCgTTCATtTGaATaACCACcTTtGTgGCgAt
cGACatcAGCccagttggtttttgctgtcgaggcgcgataacTTTtAgTGtcACCACcTGcGAtGGCACcGGtCt
gtccacgCAcGTGCGTTTTTTaATgCAgctatatctgttgcaatatgggggaaagtagttagcactggcttagtt
ggggttaatctagtgctaattacttctcttcatttggagatctcatgacaaccatcacgatctgtggatcgttag
ctgcggcgttgtcgatcgcttgggagtaagtgccgttgcggtcatccggaatttcctcactacaaggaatgtcaa
attatattaagcatttatcatagttagtaatacttactatattggattgcagatgttcatcttcatgctgctggc
tgtgcggatgcacatctgcacaaattcctgggtctcgcgcagatttcgactcggtGTgATCACatACCAcCTatt
gatatgcacgtttttaaacatcgaacaggtgcgaaactcattgGTCCAaTCgGCgCGagcgTCgCAtacgaatat
tttttggttgccgaataatattttttccggtggcaacaCGCGtgctGGaATcTCCACCAaggcggagtccagctc
gatgttccaggacttaagggtctctacactctgtttacacgactttaagcgcttgttgaacatgcgaaggcgttc
gatgcgacgatctggattcagcctggtatgttcactcatggccctcaacgtcctgagaattataaaaacggtgat
ttaatagcatcctttggatcacaactgattccatcaaaacacacctaaagtcagcgcgcatagcgtccgtcattc
ccgtagcccgtgccagctcgggaatgatcattatggcctggtcatttccaccacgaatatttttgtctgtcggac
gagacatgaccagaggttgcttcaagtcgcgaatgattatgttgtatcgctgaaaaagattttacttatggaaaa
tgaattacgcttttggttcgaatattaccttcttatagtaatccacgtacgaaatctcaccgtcattggttttaa
atttgcacaatggcgtcgattgaaagtcgacatcgtcaatgcgataggttttgttattataatccgttagtatta
ccataccttttaagaagtatttaaattggacaataagaacttgagagaaccataatcaaACTCACCCATtACTgc
acgcttaaatgtactttgataatcgtcactgtcgcgaatagcatcggacaaaatattgtacaaggtctcagttcg
cataaccttgtggcatatctcggaacaaagtaatatatcattttcgtgctggcgaatcgaagtctgatagccagg
ccataattgcatgcggaaattctccaaattaatctaaatttttaaattaccaaagtgagagtgatgataaatgtg
agtacagagggcaaaccttagcttgaggatcgtagtagtagcgcgagaccagcttcaagtctaagccctccatgg
ccctgcgcagtatgagattaaggacctgaaactgctcggcatccgtagattgcacagatccaacagccttgatct
taatttcaatgttttcgccagcacgactcttcgtaaccagttccaaaacataggggctatcttgaacagctttga
actgattgatgcaaaacatattggttccgtcaaagatgtagccgcccaggatccctttatgttcatacaagaaag
accgtcgcagtcgtgtagcctccacatcaggcgtaaaatcgacgcggtactggtagatggtccagtttggacgct
ttaataccttaaaatagtttgcctgcacggtaatatgagtgccaaccactcctttcttgctggtcatccctggag
gacgtgaatacaccaaatccgttattagcctacggccgcgcacggagccacgcggatcgcctgaattaaattact
aattaattacgaacgcattgaaaacaaatgagaataacaacagctcacagaagctgggtTCGaaAAAAaaAAAAA
CAAATTTttttgagcaaaaccaaataaaactactaaccctcggacttgtgcatttgcaccgcgctcaaactggat
ttctctatcgagggacccacttgagcatcaccaccaccaccattgcctccggatgcttgatttccttccgagtgg
gaagggtccgacttctgaccctgcgaatgaattggttaaaaaattgattatttaatctaattacacttattttat
aacaaagtgttatttaattagcatgtatttgtttttattgtcacatgcatattaataaactgttataacaactca
tggcaaaatgatgtacaaacatgctattcgaccttaacgtattacaaaaatgtaatgtaatgtacaaacgatgta
cacacaataacattatgcatacatacatttgatacgcatgctgatcttacatagaaattgaaatgggatgcacat
taaaagacaaggccaagctaattttggataagttggataaaaataaaacatgaaaatacataaatgcctaccagc
gaaggagcgaagccgcgattggcctctacattattgggctttcttcctcgaccacgtccacgagcaattacaggg
tttggtggtaaattcataattacacaaattacagttgcactttcttacgatctactcgtcacaaatgccgttcag
tgaataagagataacagaaattaccgggtagttgttagacgcccagggatgtgagttattccttcagttatcggt
cgcgcttaaagcgattaattgtaaatctccggacacatttgcaaagatgtagcttatacttactatttattgtat
atattatctatatatcaagtcataaaacaaaaataaaattaatatgaaattatttattttaacgtttaaatgttt
gaaggtggtacttattgaaaaggcatcgttgaattcaaaacaaggtctatataacgagatatctcagtggaacaa
ttggaattttgacaggtgtaattccataattccaaatttttataagatctttcatattaaaattataagttcttt
ttttatattcctttgtgcaatttaaatgtaaaaggggcgtatgtgccatcgtccagatggcatagtaaattaaca
ggctttgaatatttttgtaataaatgataatgataaattcgcagtcgttgtacatgcttgccattttcgcactga
ttgccctaatttgcttaagataacgttaataaatattatctcccgactg
  
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aubergine Genomic Evodifferences Profile - Relaxed EvoPrint

 (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except D.simulans, D.sechellia, D.yakuba, D.erecta, D.ananassae or D.pseudoobscura.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

taggattaaaacagcattgcacgtgttcggcaacaattgaaatttatatgtaattgtgcattggaaaaagttgca
gtgAATTATtAAATTgTATattgtgttaattgtaaattgtgttaacttatttactaagctcatttcatacgaata
tatgcattttccagcaacggaactttatagacaaaaacatttacatatttaaaagaaacaacgattatttcagat
tggtagacaataaatgtgcaatacctttattaaattcaaatgatgtacatatctacatacatatatcaaatcgta
aaattgttaacgcatttaatgcaagtcatagttTTAcAAAAAgTAcAatTGaTTCTgcAgTCCtGcTGAaGGcgc
aCGATTAATGgaTTCGGCtACgAGGAAAGCCAaTTTGTGGGCGTAaTGgCAgACAGCgGGgACtCGtatgGTtCC
gctGtAATTGTAGTACAtATGGGTCATCTTaTAgGagAGcATCTGCAGCTTATCGGCgttTAGTCCCATGTTGTC
agAAATaACaTTGTAGcTGGTaGGCGACACaGTTCCtatcCGaACaGCCTGgGACACTAggAAGAAGTCgTAgCG
CTCtGGCAagGTAATaACGTCaTCgACtACaGTgCCCGGaaCTGGgTTgCGatgcccagtaAAGTAGCGAGaaTT
aATGCGCTTGGatACAAttATAAATGtCAtGCGaCAGCCcTCcTgTTTgCCaGCtGaTTTGTAAATTTCgTCGAG
ccTgtcCTTTAGGgtgTTCACcTCgcTGTTtACcACCTGGTAgAGCTGaCCATCgCCaACACCgTCgCGaAAGAA
gAGAATGCGCTCTGGCAAAgaaCgGTGtTGCTCCtgaTACGaccTCAGGGCGcAcGcCATGTTCAccGACATcTG
cTCgGACAACTCtTGGCCCTTaatGTGTTCGtTTACgGtgGAGAAGTAGCGGaaaGActcCTTCtgGTCCATgGT
tGCaACgAaAGCcCCATAtGACTTGTTcTTatTCTTcGgtGAATGgCAgACATCgAAACCAACAGTCATcAgaCC
gtGgAGgGGgAtCactAcCtgCCAgGGAGCtCCCATCAaTTTGGCGTTCATtTGaATAACCACcTTtGTgGCgAT
cGACatcAGCccagttggtttttgctgtcgaGGCGCGataacTTTTAgTGTCACCACcTGcGAtGGCACcGGTCt
gTCcACGCAcGTGCGTTTTTTaATGCAGCTATAtCTgttgcaatatgggggaaagtagttagcactggcttagtt
ggggttaatctagtgctaattaCTTCTCTTCaTTtgGAGatctcatgacaaccatcacgatctgtggatcgttag
ctgcggcgttgtcgatcgcttgggagtaagtgccgttgcggtcatccggaatttcctcactacaaggaatgtcaa
attatattaagcatttatcatagttagtaataCtTACTAtattGGaTtgcaGATgTtCATctTCATGctGctgGC
tgtgcggATGCACAtCTGCACaAAtTCCTGgGTCTCGCGcaGATTtCGActcGGtGTgATCACatACCACCTaTT
gATaTgcacgtttttaaACATcGAacaggtgCGaAACTCattgGTCCAATCgGCgCGAgcgTCgCAtAcGAatat
tTTttggTTGCCgAAtAaTATTTtttccggtggcaacACGCGtGCTGGaATCTCCACCAaGGCggagTCcAGCTC
gATgTTCCAggacttaagggtctctacactctgtttacacgactttAAGCGctTGTTGAAcaTGCGaAGGCGTTC
gATgCGaCGaTCtGGAttcagcCtGGTAtgttcactcatggccctcaacgtcctgagaattataaaaacggtgat
ttaatagcatcctttggatcacaactgattccatcaaaacacACCtaAAgtcagcgCGCATaGCgTCcGTcATTC
CcGTAGCCCGtGCCAGCTCGGGaatgATCAttatggcctggtcatttCCaCCACGAATaTTTTTgtctgtcggac
gagacatgaccagaggttgcttcaagtcgcgaatgattatgttgtatcgctgaaaaagattttacttatggaaaa
tgaattacgcttttggttcgaatattaccttcttatagtaatccacgtacgaaatctcaccgtcattggttttaa
atttgcacaatggcgtcgattgAAAGTCgACATCgTCaAtGCGATAGGTTTTGTTattaTAaTCcgttAgTAtta
ccataccttttaagaagtatttaaattggacaataagaacttgagagaaccataatcAaACTCACCCATTACTGc
ACGcTTAAAtgtacTTTGaTAaTCGTCacTgTCgCGAAtAGcaTCGGAcAAAatattgTACAAggTcTCAGttcg
cataaccttgtggcatatctcggaacaaagtaatatatcattttcgtgctggcgaatcgaagtctgatagccagg
ccataattgcatgcggaaattctccaaattaatctaaatttttaaattaccaaagtgagagtgatgataaatgtg
agtacagagggcaaaccttagCTtgaGGATCgtAGtAgTagCGCGagACCAgCTtCAAGTcTAAgCCCTCCATGG
CcCtgCGCAgtATgAGaTTaAGgAcCTgaAACTGCTcggcatccgtagattgcacagatccaacagccttgatct
taatttcaatgTTTTCgCCAGCaCGacTCTTCGTaACcAGtTCCAaaaCATAgGgGCTAtctTGaACaGctTtGA
ACtgattgatgcAaaACAtattgGTTCCgTCaAAGATgTAgCCgCCcaggatccctttatgttcatacaagaaag
accgtcgcagtcgtgtagcctccacatcaggcgtaAAATCgACGCGGTACTGGTAgATgGTCCAGtttGGaCGCt
TtAatAcCTTaaaatagtttgcctgcacggtaatatgagtgccaaccactcctttcttgctggtcatccctggag
gacgtgaatacaccaaatccgttattagcctacggccgcgcacggagccacgcggatcgcctgaattaaattact
aATTaattacgaacgcATTgAAAAcaaatgagaataacaacagctcacagaAGctgggTTCGaAAAAAAAAAAAA
CAAATTTTTttgAgcAAAAccAAATAAAACtActaaccctcggacttgtgcatttgcaccgcgctcaaactggat
ttctctatcgagggacccacttgagcatcaccaccaccaccattgcctccggatgcttgatttccttccgagtgg
gaagggtccgacttctgaccctgcgaatgaattggttaaaaaattgattatttaatctaattacacttattttat
aacaaagtgttatttaattagcatgtatttgtttttattgtcacatgcatattaataaactgttataacaactca
tggcaaaatgatgtacaaacatgctattcgaccttaacgtattacaaaaatgtaatgtaatgtacaaacgatgta
cacacaataacattatgcatacatacatttgatacgcatgctgatcttacatagaaattgaaatgggatgcacat
taaaagacaaggccaagctaattttggataagttggataaaaaTAAAacATgaaaatacataaatgcctaccagc
gaaggagcgaagccgcgattggcctctacattattgggctttcttcctcgaccacgtccacgagcaattacaggg
tttggtggtaaattcataattacacaaattacagttgcactttcttacgatctactcgtcacaaatgccgttcag
tgaataagagataacagaaattaccgggtagttgttagacgcccagggatgtgagttattccttcagttatcggt
cgcgcttaaagcgattaattgtaaatctccggacacatttgcaaagatgtagcttatacttactatttattgtat
atattatctatatatcaagtcataaaacaaaaataaaattaatatgaaattatttattttaacgtttaaatgttt
gaaggtggtacttattgaaaaggcatcgttgaattcaaaacaaggtctatataacgagatatctcagtggaacaa
ttggaattttgacaggtgtaattccataattccaaatttttataagatctttcatattaaaattataagttcttt
ttttatattcctttgtgcaatttaaatgtaaaaggggcgtatgtgccatcgtccagatggcatagtaaattaaca
ggctttgaatatttttgtaataaatgataatgataaattcgcagtcgttgtacatgcttgccattttcgcactga
ttgccctaatttgcttaagataacgttaataaatattatctcccgactgc
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Enhanced BLAT Score Card

 (Back to Top)


 Drosophila EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: aubergine
        

     Reference Genome: D.melanogaster
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              D.melanogaster
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4400
            1
            4400 0  
  
           
            232
            395
            4043 0 
                 0 /
                 232
               
  
           
            151
            33
            3175 0 
                 0 /
                 151
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.simulans
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            3865
            1
            4394 0 10 
  
           
            203
            395
            4056 0 
                 12 /
                 176
               
  
           
            124
            251
            3393 0 
                 28 /
                 81
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.sechellia
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            3844
            1
            4394 0 1 
  
           
            188
            395
            3666 0 
                 37 /
                 138
               
  
           
            103
            3148
            4011 0 
                 15 /
                 75
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.yakuba
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2917
            1
            4269 0 3 
  
           
            129
            254
            3657 0 
                 43 /
                 69
               
  
           
            91
            3138
            4202 0 
                 32 /
                 42
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              D.erecta
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2866
            1
            3955 0  
  
           
            149
            3064
            3383 0 
                 46 /
                 66
               
  
           
            159
            265
            4313 3 
                 93 /
                 29
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.ananassae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            1174
            79
            2935 0  
  
           
            78
            3140
            4027 0 
                 51 /
                 0
               
  
           
            60
            3134
            3668 0 
                 33 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.willistoni
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            949
            363
            2512 0 179 
  
           
            676
            363
            1572 0 
                 1 /
                 496
               
  
           
            184
            363
            607 0 
                 5 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.mojavensis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            894
            323
            2008 0  
  
           
            194
            18
            3987 0 
                 158 /
                 0
               
  
           
            118
            3096
            4342 0 
                 82 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              D.pseudoobscura
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            789
            380
            2323 0  
  
           
            169
            380
            3180 1 
                 13 /
                 117
               
  
           
            132
            3076
            4037 0 
                 93 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.persimilis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            608
            380
            2014 0  
  
           
            106
            137
            1613 0 
                 68 /
                 38
               
  
           
            79
            3111
            3646 0 
                 79 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.grimshawi
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            295
            389
            3415 0  
  
           
            96
            3331
            4053 0 
                 75 /
                 21
               
  
           
            105
            3087
            4208 0 
                 105 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              D.virilis
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            241
            334
            845 0  
  
           
            184
            2411
            3667 0 
                 143 /
                 0
               
  
           
            107
            193
            2529 0 
                 66 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
D.melanogaster aubergine Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the D.melanogaster aubergine reference sequence that are conserved in the D.simulans, D.sechellia, D.yakuba, D.erecta, D.ananassae and D.pseudoobscura orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Drosophila EvoPrinterHD - EvoPrint and EvoDifferences Profile

D.melanogaster aubergine Genomic EvoPrint (Back to Top)

aubergine Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Enhanced BLAT Score Card (Back to Top)

Drosophila EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile
