Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
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Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  C.elegans cfi-1 locus Genomic EvoPrint
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      Black capital letters represent bases in the C.elegans cfi-1 locus reference sequence that are conserved in the C.brenneri  and C.briggsae orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 3' --> 5' direction)


 attaaaattttcctccaaacttaccatgggatctctcgtcgtattccaaaccatctgaagtccctggaagctctc
ttgacttgacataggcttctgtagaattgaagcttcttctcttgttccacaccgattacctcctcctcttggtct
tttctccccttcttccttcatCCAATTATGTCCATCAGCACCTGTCGATCTCtcgcatcAAACAaaAACAAAAAc
AACATGGggaccaTTCTtttcgtgTTTCgACCACAAAACAcTTgctctccacACtCTCTCTCTCTCccTCTCTTt
TattCttgACACCACTTTGTCAaTTCTCTCgATTTctcatttTTCTcgtgtgggggaCTCaTGTCACGACCACAC
CTCAgGGTGTTAaCtcttaTTTctGCACTTTTTGGAactttTGACattgtttcaaaattggtatttttaggcggg
gagttttatataattttttattatggaacaattcggaatgttgttttttttcaggtcttctacgtaggcacggta
atgcctgcctgctttgtgcctacagtcatgcctacttttaaagtaccagtgaacagtatttttcgtttgaatttt
gaacgtattattccaaattaaaaataaacaccaatcaaccgacttcaccccaaatttcggaaagtaggctggcgc
gtaggccggtagatatgcctgaatgcctggcagaaaaatctgaaaattagagaaatctccatttttgaatttaca
tatgctttcttcaatttgaattttgaaatggtaaattggtgaattcctccgattaatgttactttttaggatact
gtagctgatatctaggagcgtcaaaccttcatttttacactatgattcattaaaaaagaaaccaagttttctcat
tgaattctttccaaacaactaAATGAATGTCAATCAATCTTattccttCaTCTATACAaAATCacatccacaaaa
tcTTTATATATtTTTATCGAAtcgccttccatcactctcacatcttgctctcatcaaggtagtcttagcttctcc
ccacGGATcGAAAAAAGATAAGTGATAAATGATATGaagagaaaatgagaagtgagtacctccccactcctcaga
gaaAGAGAAAAAGTGTTCGGACATATCTCGTGTCAGGTCGAtgggtgcccgatcatcggctgTGAgcACGAAAAA
AAaTGaAATGAaTGaatgaggtgaAAtgaAAAGagGAAAGATAATGAtagccacaccgttgatatgagtctagga
ttacatgcacaacattccaagagacactttcattaggtcactactttattatttgttcatttattagccatatat
tctcgttgttcagattctagatattccgtaaaaaattcgaaggacaattgtctttaagaactattttaaaaactc
tgaataattttgatatcttaaaaacttgttttaaaatgttcaaaaagtacatattgcaaagatattgattcgaga
aatttctgctgttcgtaattgatttacctggaatactctagttggcatcctgcaaaatactacagagatatcaga
ttaaagcctgaaaaaatctgtgaaaatatttttgaaaaaggccgacaaacgggggtttattcattaaagcagatt
ctgggacaaactttccaaatcggttgtttctctaggctttttttgtaagttttctgatcaaacaaatttaaatcg
gtcttagtttttgtcaatttgaaaacgaaagaatagatgcaaaatttcagtgtttgaattctctaaaaccctatg
tatgttttgttttgcaaatttgttttgcaaattctaaaatctagaaatttatcataattgatatctgacattgtt
tgctgtttcaattttcagcctatttgtttttttaaacaaaaatcttaagatgttaaagatttttttcaggatata
ttttcaatatgcatatttttgtattttcattttagattaacctataattgactgaaattcaaattgcaacatgct
catattcttcccTTTTCCATTCCTtttagactccaCCtcaTTTCTATCGTAATCGTCttctctTCCtcTCTTTTc
ATttctctctatctccaaCTTTCTCtcATTTCTCTGcgccttTCCaAttctcAatTTCCATcttTAGAAGtGAAG
cCaggAGGCTGCTTCCcAAAAgTAGGcGtgGCCTTAATATGCGGCTTGATTGGTCAgacacactttactccaata
ctaccaaaccatttccaacttttcatttttattcgaatgcccaattgttcattttggcgctcagttttggaagaa
cttttgagagtttgtttagaactgtcttcgaacttcggcttgttttacccgttgctcggactgattttgcaccag
aaaattaagagattgtaattgttgagctggaaatataaataagtgtttcgacttaaatctaattattttttcatc
cagtcttcaaacttctagcacatccagataactgtttagtatatgtattattttaaacttatttgacacgagcat
tttcaaatttatataaaagttagttctaatcggtgtactaggtattaaactcaatgcttacaactgtgtttttca
gttgttgtgtcaaacttttcgattgaaaaagttatagaaatctggagcactgtttgattacaatttacatctttc
aagcctattttcagtttttcaaaactttttcaacattttaacataaattttcaattataaagtcgaattttcgtc
aaatttggaggtttttcgcgcaccctgacgttgttattttggagttcttctttcaagccaaatttgaaataatta
cacaaaagttcaaatgtttccctacattttatcataaactttcagttactttagtaaatgaaacataacaactcg
aaaaaaaaattaaaactacaagacaaccgagatacgagctgtcagttaaggtgcactgctaatagaggcaatatg
gtatgcaaatatcatgtaagtgtgcaacactttactttttaatgaatatttttaaaaattttaatatcaaaagta
tataaatttggactaattgaaatcttaatctgtacttcactcgtttaagttggttgaatgtgtctcctcgttttc
cgtgtaaactTgTCGATTAttaTcaAGAGAcatcttgTGAAATATTGAgttaatagaagaGATtCagAgTGTTTG
TtAAGgcAGATACGACACAAAATCATTGACGATGATTACCGTATTGCTTAACAAGAGaGAtagcaatagattgag
ggagagaacaagtCATCCAAGTGGGCGCAAAATATCATCTCcccaccccgctcactgtgctcctcgtttccaTcC
AAATGTTTGCcTtAAATTGCGCAtctacatctacTCTCTTCTCGCTCAATTGACAAcCGAAAAGACACTGTTTGA
AACACtgtgaaacacACAAAAATCGGCTGcccggacgttcCTGCGTCTtgccgcactccatgatctctccgtgtt
ctagagccccCGAGTTTGTCTAATTGATATAGCGCAAAGTTCAGAACGGATTACGGTAATTGATGTAATCtGGTC
TTGTGtCTCATTTCCccatccctcatcatatgatttttatgttcacctcttgttttaactgtttgtccttttcat
ttatatcattaaaattgttttttgatttgatatgttaatttaatagatgggatttataattttgcatttcatttc
attcgacttcattttatcggttttgatttcaaccagtcttttctgaaacaaaattaaactatctacgtggttggt
gagtaagtctgccaatcattgtccaaaaagtcagaaatcttatcactgagtagccgagccgacactcaaagggca
tgcaagcttggcgctgtgccaagatcttgtgcaagcaatagagcaactttacatcatctcagaaattaaatagtt
ttccaattctgatacatatcaatcgttaaattttttaactgaaaattgtgtacaataaaatttgaactgaaatat
tgaaaaagccaagtttgggcgaggcttaattttgacacttattgcattacaaaccaaccctatttgaatagccta
cctgtaagtaaaaaaaatttcttcttaaaaagtaaaaaaaaaacattttaaaaatctttaaatagtctcgaccca
tatcttggccagttgtgcgtttttgcatttaacattttttgcacttttcgaaattcactcaaatagactaacaga
aaaaaattattttttgtacaattacatattatccgttatttaagagcaatttgaaaggattttgatgaacaaata
ctttttttttaatcctacaatgagaggcctcccagacgcatcacatttttcattggctttcaaatgaatcatgta
tttttgtgaatccgatagaacttcagatttcaaataagaactctaatatcctgacatttctccacttgaactttt
ataaactactcgcaatttcgttcgaatgtttttgagtgatttgacaattgatttccacccgtgtcaATtTCGATT
AGAtcCCCttCATAAAATTGCACTTctctgccacaattgccttctcctcttgtgctcttttctcaTTCGATGTAA
ATCATTTcgtcGATTaaaAAAAAACtTCTAAgCAGTTGTtttcctTTTCTTCtcggcaTCTTCAtCCACCCCttc
cttGCTAATTGATGCGATATGAAACcATAATGtctgccacccgaccagtgcaaaaaaagaacGAGTTCAcTTTtg
tTCCggcTCtTCTCcaACACGAACAAACATGTGTTACCCATTAGATTttTCAAAaAgacccaaggaatttttgtg
gTGTGTGTGGCCcctctctctaatatctacaagaacttctcgcTCtATTTctcgTTcTTTTGATgACcGTGATga
tgacgatggatgatggaaaatgaattctaagagtttgtattttcttGCAgATGTCcGTaaGgATtGACGAACCGC
AacTGTTCGTcAGtATGTCAAAgGAGcCgaCtCAaGAaACtGTtAATGTTGGtggacatcatGATGAttCaAGCA
GtAATTGTGATGAacGAGttGATGATCAaacaGAaGAGGTTtGGcTttatttttaactcttaatacggtgaccgg
tccgacacgatcaattattttgttaaatgcaggaaagtgtgcgtttataaggagtacggttacttgaatttttct
gactataatgtaaattgatggcactttttcacttctttattttgttcacttttttatttttcaatttgaacagtt
tttcaaagcttgataagtgagcaaaaagtattttcaatttacattagcaagatttttacgaaggcattttcggag
cttcaaaaaccacaaattcgacatcttgctttctttgacttttaaaatttgacgtcttcactgaatttttagtgt
agctcggattttcggaaaatttagtttcttcaatatttattggcaaatctgtgcaggtctgaaacttctgaaata
tccaaaactgacaatccaataaaaaaaTTTCAGCAgAAAtCacCTCCAgcttctcccgatctaaCAGCaAAcCTa
AACgTaTTCGACcTGGAATCCCGgCAAAAAGTaGTtCAACGAcTtctaaattcacaattgaatctgtcaaatcta
cgagcgcctctcaatttaccaccgatctttcaagcacttcagggtccattcagtaTTCAGCAACAgCTTCTaGGt
cttgcgtcaGGcTTaACAGCaAttTCtCCgggaCTTGAcGAcTATGAcGaaGAGAACACtAAtcaAGGAGAACCA
GAAGATTTGACaTTAGGaGGATTcaGAAAAGAaAcaTCaGtgAAATCAGAaGAaCCATCAGAATCTGGtaTaAAT
GCatctGGTCCAGCATGGTCATAcGAAGAaCAGTTTAAgCAGGTTAGcctTTTTGggataaaccatgctttatgg
gcaaacgataggaatagttaaagttcaataaaaaaattgaataccgtatttcctctattagttaggcacctctat
tagttttgcacctccattagttttgcaccttaatagttttgcaccgcttcatttgttccctaattttaggaattc
aaaatttgcattataaagtcgttctaaaaattaggaaaactcttacagacttggtataacaagtcaaaataggca
aaatatgagtacaattcggacaatttttgcgtatcagtcgtaaaattcgtccatttcggttcataatttgtcatt
gaaattggtgatattatgtcataacttaatgggaaacatgagaaaaaacctgttcgaaaattagttttgcacctc
cattagttttgcatcaaattaggtgtccgaaaattagttttgcatgccttactaatagaggaaatacggtagtgt
taatgaaaaaatttgagttacagatttattgggttccaattttacaataaaacaataattaacaacaaccggaaa
atatatgatgagcgttttttctacatagtcgcggagcgctattgtcttcacaaaaggcaaatttcctattcgtca
tataataaattaaattactttgataccttttttgtgcaacatgtagattttccaacgttaaattaattgaaaaat
tgaaaatctagaacaaattttagaaatgtattcagaatttctcagtgttttcccccttctcatcttaattccgtA
TTCATCTCcAATTACCATAGtGACgagcaaagatggagaagcattTTAgTTAATTATgtgtgcaacaactTTCTt
tcgtagCTACCGTATCtCaagtgattccttgaaagaATagAtGAtGAAGCATTGTgTTCACACATTTACaAATCT
ATTGTTCACACCTtcgGAATCACTAATTCgcttcgtgTTGTcaacttgtgaggggtaatatgagaaagagaaagg
ccatttgttttacctatgtacaactaATCAATTATGaGTTagATATAtaCAAtaagtctcactaatgaattattt
atagtttttgattttgagatatattctgagataaatattatttgttagatttatttcagaaaatactagccaaga
tctggaccacgttaatcatttctcattggcatctagaaaaataaagaaaagttttcacaagtgtcagaccacacc
taatctaaaactgctttcaactagtctaggattagcttgattcctttgatttcaactttttttttaaatttgaaa
ccgatacagtactactttttaattttgaatcaatataaaacttgcattaactttctgggcggagtctacggagag
aatttgagtgcgcaaGAGCAttTGTTTgCggAGCCGATTGGCTgctCGAATCaaataGATTAATAATGTtggAAG
AAAagaatggaaaagcatagaacatgtgTGTGTTCactttttaacactgttATCAGCTGATTaagtGGGaATgat
cagaatattagagagattaaagttcgaaacatagtttgtcatattttttctattagttgggcactccactccact
ttgaaagaatatattttggcgtatttcaacggtacaaaaggaaaacgaacaaaAAAATTACAGAAacagaaattc
caaatagtttgtttgttggctatatgccaaaacaaaagccaagggagatattcgctgttaaaattgaagaatgtg
gaaaaataatttatgaaaaatttccttgcaccctctgcaaatctacaattaaacaaccaagttcctgtcattttt
tgtaatatcaaacattatgtttttggtgtTTTCAGAATCcTTCAatTTCcCCATCAAAcggtGGAGtATTcTGGG
AAAAGTTTGGAAGtATCGATAAAcTTTCaGAGgtgcGTCATCGTGTGtgtCATTTTgaagttttcaacaaaaaat
tgaagtggctacttattatagttaacatcaaaaacACACGATGACTactaaaaactctttttgtggataatcaat
ttaatttattttcaaaaacatgctCTTTTGatgggtttctgacagacttgacGCAATAAAATAAAACattttaaA
CaTAATAATAATAATAATAATGAttgtaaaaagggggaatataatgggatgaggagggagaccaccAgAGTTTAC
AACATGTAATAATaGAGaGcAAtagcttcCCATCCGGGgggttgaaaatgggcgaagcagaggaataataGAAGA
GAGAaaGATTAGaAATGATTTATGAtcaaaatatagaatctatatttgaatttagaaattggtggttatttatga
aattttacaataaaaagggggtttcttgcaattttgtccagaaatttgaaacttccaagtgaacctggaaaaaat
aaaaacttcaaaaaaaatccccaccaatttcctggtacctcacgaattttgcatagaacctttgcttgaatatcc
aggtaccgtaacttttctctaattttgttgtgaattatctaattttcttattttctctcatattgcaattccata
tcccatttcaacccaaatcaattatacttcattttcttttttcttaaagtcggCTAATTGAGTGacTCGAACGAA
TATTTAATTATGAGAAgcttctaaatggaagaagagaagtttttgagtgggggagaaccattattgagTATTACA
CTTATTAgtcattacaataagttgggcctttttcaaaactAAATGggCATGTTTTTGATGAGagaaGAAAATGAA
agagggacttttgAAATAattaagttTTTTTCAGTTGTACGAaTTGTCaGAcGATGTGAAAAGGAAGGAATGGTT
GGATGATTGGCTCAAtTTcATGCATAGAATAGGTAaggttacacaaagaataagaaaaataataataaatttgta
ggtagtaagtagtaagtttaatcgtaagcccaaattaagaatttttttcttcaaccaaaaattccaactattaaa
cttccaattttataatctcacctaaaaaTCAAAATTTcCAGGaAAACCGGTaACaCGaATtCCAATaATGGCAAA
gCAAGTACTTGATCTtTAtGAAtTaTAtCGACTtGTTGTaCAACAtGGcGGTCTTGTtGAAATAATaAAtAAgAA
AtTATGGAGAGAAATaACaAAAGGAcTaAATCTtCCaTCATCtATcACATCaGCTGCttTTACTCTtCGAACACA
ATATCAaAAATATTTaTATGATTATGAgTGtGAaAAAGAGAAAcTtTCAAATCAATCtGAtCTtCAACAAGCaAT
tGATGGtAATCGaCGAGAAGCaCCTGGAAGACGGACgGCTCCaTCATTtCCaTTACCtTTTCaACTTCCaCATGC
TGCaAgTGCtgctGCaAcaATGCttaataaTCAATTAAATGGaTTaGGAATGAGAAATGGTTtgtatttatcttg
tttatttttaaccaaaaaatccagaaacttccaatctctccttattacagacctccttgacgatgaaaatacatt
aagtctccaggcttctggcctctttggaacaagctatGGAGCcGAgCAAATGGCaATacttgaaGCTCATCAaAG
aAATcTaGAAAGAGCtcagagagctgttcaacagcaagtcgcgcgccaaagtctagggctcacagcatgttcaAA
TGGcAATGGAGGAaatattCATaaTTCTgGAAGAGAATCtACGTCTAGtAATGAcTCaGAcATTCCtGGTttgtt
gaaaaatgattttttataaaatgaactcggaaatttcagcgaaaagaccaaaactagaaaatgacgtcaaaacaa
atggtgcatcgagtatgaggattAGTACAAAACATtCAGGTatgaaaggaaacttaattaaaatagaagaaaatt
gctaaatttaatggtatttttttcacaaaaattgatactatgagagatacagtaatctgttttttcaatgttctt
caggtcgtggtaagaccgtattttttgtttaaaaaacgataatttaattactgattaataataaattttgttgaa
aaatctacaacaatttaaataaatagcttccttaatttcaataatttcagataactcaaagacatcaatgtcagt
atcaATGGAAATCAAcGGaATcACcTAtCAAGGagTATTattcGCTctcgacgagacagtctcaGAGTcttAAAT
aatgtgtaaTATTAATAATAtatcggaaattttgcatttttgagaaacacgtacttaaaggtgcactgatatatt
cggatgggtctcgccacgagaaagaatcaaaacaccggaaaaactagaaccataatttttcatcgtgccaaccca
tccgaataaatctgtgcacctttaagtacctgtttaagaagattgcagagttacgatagctcTTTcCAATTgagc
acaccttccgattcttttttgtTTCaatGATTCGCGAGCTTTTATGACAAAAgactAAACGAGCTTTCttCCcca
ttcaatttatagattacccccatctgattacacaggtgattcgccgtttgtaaaatacttatggcctccaatatt
ttagatgcattttgcaaatcgcgaatttcgctgcaggaccattaacattttagcagtattttggtaatcgcgact
ctcggtgatcgcaatttgcacaatatttgcgattttgcaagtattttactatatcgctggtgcctcttgtagaag
tgcgcgaactacatttcataagtattttaaaaaccgcgcatcacctgtgtttcctgaaatttcagattctcccct
cTTCCGCCAAAAAcCCtGTCTcCTCAAAtTgAAAACCCCcaAAATCTCTAGTTGTGAGCTTATTTCATGGTGAAA
TcaatgtttatttccaacgTTTTTTTttCATtcATTTTTTttgaaaataatttaattttaaaacttaaaacaaac
tctgcccgttccttatTCtTTATCATAATTATTCtgagAAACgCtgcttaGCACGCAaAATAAAAaCTCACAaat
attggcacgaaaatagaaAACAACAAaaaatggaaaattgtaacaaaaatgtatgacaacaacaaaaagtaacaa
gtatttgtccggaaccgtataattgagaacaagatctatgaaaaggtggactgtaacaacaaaatataacaataa
gaacgacatcgtggattgactattagaaaaatgggatattgaatatctgtaaactagtgtgaaaaatgagaaaat
aaatagataaatgactttttaaaagacccgcatttcgggtgagtatgatgtaaatgacgagtaagttgaaatgta
aatgacgtagaattaggtgaatgacattccatcgttccgaccaattccctgtaattaaaattcaaaaatatttct
caattttttaatttttaaaaccaacttacacacaaacggaatcgttccatatcaaaattctcatcagccatcaat
atttttgctcgttgagctactaattttgcatagtatactggcgaaggaatggagacgcttcttgtgcatctggat
tgagtgtgacatagctgaaatggtgattttatatgaaaactttttatcaaatctattacctgataggtcatctca
tgaatatcggcagatggtattgaattatcgtcccacatgacaacatacttcgtcgggcgagaagttccttgaatt
cctgcatgtgatacgaggtagaactcgaagagattattcacagtgattcctgtttccacgagagttccagctggc
acattttgactatttccgacgcgatcctgaaattgtttgaaatttttatgaatagggaatcgtttttgcgacttt
ttttttgaaaacCGGAATTTTCagttttagatgtttccttttccaaTTTTCcAATTTTTCgtttctccaattttt
ccaatgatTTTCGGTATTTCTCAATTTTTCAAAgAACTTTTTTTTcacatacaAATTTTTttttgataaatcaac
gtttttccgtatattttTTCAAAATTTtccaaacaacatcgaaaaatcgagccttggcttcaatgtcttgttttt
agttgcagttgccattacgattgaatccgacttttttattttggaaaacttaaaatggcctatcaaaattgcact
cattctataatttcgaatgtaatttatggtggaaaaaattaaattcaaaaatttatgaaattttcgttaacattt
ttttgttgtgaaaaaccaaaaatacatttttcgccgaaaacacgaaaaatctacagttctggttttcaaacataa
tttaaattatgaaaacaaaacaAACTTtttcattagctgcaaaaagtctcgtatgatgagtgacatctaacccaa
taaaagtgattcctggctggaaaccgtattcgatcatagcacatgcatcccgtacagcacgtaattccgtttgca
tgatttcatcgacagtcacatctgcgattccagcacgataaatgataattttgtggggtttaaatcctgtagact
ttcggaaattgataatagcttcacgtgtcatttcacacatatcgacaatagttctttgatgacgtggttgagtac
gaaagattggagaaaactgagtaggatgtCCATCcAttGAaccgacgagACAAGcgatggaggaatcacaatgag
ctATAGAAGaTGTgGAATcAGAAGATGaggcgagtGAAcTtCGaGtTAAATGACATCCgAtAAAAAGTacTGGTt
caGaAttTagaGATtGTGGAGGAGaggataggattACaTTaatgCCtCCGAGTTTcGAgTTGATTTTCATaCAgA
GATTAGAaaGAGTGTGtGGtGAcgctttcGaaACATTtTgaGatCGAAcACAtTGAGTTGTcaAaCCaAGtAGcT
CTCCtTTTCGtTTCAAtTCtCCATAaacTacaGATTTTCCgGgGACAATGCAtAaaACgAGTTGAAGattgtatt
gttcattcaaatgttcgagaagcttcacagtctggtctggttctgcgtatctgaataaggtacaattataggttt
attaagcagtttctatcggttatgccgatatatgcacattaacaaaatcctatttctatttctcatatttctata
aagatttagggaaaaaaacacagcgatgagaaaagggggatttttacatgttattttttaaaaaaattttaaaaa
caatgtgccgcacatccctgattccaataaaatcgagtaaaacattctccggacctgcagaatcggtgttcttcg
agaaaaggcattccaatttcagaggcaacattgacgagatttctgacaaatgaacgcatgctggcttctccgata
atctctgggcttgcgaaacaaacaattgcccattcctgaaacataattcgctgatagtttgttatttaaataatt
tatgagtgttctacaaagaaaacctactcgaatctggattccgctgtaaAAATTCTTTCCtCTCATATCCCAtGT
TCCATTaTTcGGAactGTTACACAcTCTTGtctcttcaaatttggggaacgatagagaagacgcggaaccggcaa
gacacgtccttcaatcttcaacaattgagcttcaacttttaatccaaatttaaccgcattgacatcattatccat
tttcagccgattctgaaggCTCAtgACtGCATTTTgtCGTTCaGTtGCATTtCggCTCGTtGCtCtgAtcagatt
tgcaatctgttgttcattcagtttcttgatacatcgttggccactgactacgtaacaaagctccaaaggaagaat
acattctcgagtgcgtccaacttcaatacacggaagatgcttatatgtcagatcgatattataacgccttttata
gtattcaaccaatgagagaggtttagaatcttgattgccggcagtctcggagagatggaaactaatattttcagt
tggtTTCCAAGTgCAaCggGCgAcaCGaAATCTTCGTGgacaactacagTGTCTgGTTTCaAcTTTgagtccggc
cacttcacggttgaactttttcttttgaacatcgctcagcgaacgtccgtcggtgactgttgccagtggaacttc
cagaatttcagcaaggaattccacgagagccacggggcggtagaatgtagttgttgcaacgtcgagattcatagt
gagtgtatcgaatgtctcaacaacattttgataaaaaccgtagcaaacttctcgtccaactcctaaattgacagt
tccccatccaaggccatgcgagggttcgattgcagaattttgtgcaattgagaagaaagattgaagcacggcatg
gaaatttccagtagaagtttgacggaagacagtatcaattgcatgcatcattcgcaacttctggttctgatcctg
atttcctgtgatactgaaaaagattgaattaaaaacaatgaagaaggttttccaagtaaaaactcacattttagt
atccaagaggaagctgtcgacatgtgttagatagagtttgaatagattaggtgattcttttgtattaacaactcc
tgcaacattgatgactgaattattcacttccttgacattaatcagctctgttgagtacacagtgtgaattccatc
gaaaactaacgggcactcgataagtccgggattctgttcttgcagagttctcaaaatcgttctgttcagcttttt
cgacggaatatctggatcgaatcgaatatagtattgatgaataatcgatccattgcacgtgatttgaaaatgatt
ggcgagaagtgataagaatcgtcctgtagtgctgggaagtggctttcctatcaatttgaatggctctctgaaatt
tttaaatgttttaattgtaatttctcaggcattcacctgttttcttcaataggatgcaggtagagatcatcggaa
actctggatccagaagaactgctgagaaactgaaaacaattttatgtaatcagctaaatccgaattttcttttta
aaaacctcattttccaaactgggcacgttgatcgaagtacttcttgatgaagtggaactcctcacttttaacttt
tcgaccaaatcatcatcataaattgccgacagcaaccattggtcttccatacctgaaatttgttaatttaaaaaa
actcaaactggaaaacgcaaagagaccatcggcaatgtaaaatgcac
  
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cfi-1 locus Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

attaaaattttcctccaaacttaccatgggatctctcgtcgtattccaaaccatctgaagtccctggaagctctc
ttgacttgacataggcttctgtagaattgaagcttcttctcttgttccacaccgattacctcctcctcttggtct
tttctccccttcttccttcaTCCAATTATGTCCATCAGCACCTGTCGATCTCTCgCATCAAACAAaAACAAAAAC
AACATGGGgaccATTCTTTTCGTGTTTCGACCACAAAACACTTGCTcTCCAcACTCTCTCTCTCTCCCTCTCTTT
TATtCTTGACACCACTTTGTCAATTCTCTCGATTTCTCATTTTTCTCGTGtgggGGACTCaTGTCACGACCACAC
CTCAgGGTGTTAACTCTTATTTcTGCACTTTTTGGAAcTTTTGACATtGTTTCAaaattggtatTTTTAGGcggG
GAGTTttatataattttttattatggaacaattcggaatgttgttttttttcaggtcttctacgtaggcacggta
atgcctgcctgctttgtgcctacagtcatgcctacttttaaagtaccagtgaacagtatttttcgtttgaatttt
gaacgtattattccaaattaaaaataaacaccaatcaaccgacttcaccccaaatttcggaaagtaggctggcgc
gtaggccggtagatatgcctgaatgcctggcagaaaaatctgaaaattagagaaatctccatttttgaatttaca
tatgctttcttcaatttgaattttgaaatggtaaattggtgaattcctccgattaatgttactttttaggatact
gtagctgatatctaggagcgtcAAACCTtCAtttttacacTATGATTCATTAAAaaagaaaccaaGTTTtCTCAT
TGAATtctttccaaacaactaAATGAATGTCAATCAATCTTaTTCCTTCATCTATACAaAATCacatccaCAAAA
TCTTTATATATtTTTATCGAAtcgccttccatcactctcaCATCTTGCTCTCATCAAGgtaGTCTTAGCTTCTCc
CCACGGATcGAAAAAAGATAAGTGATAAATGATATGaAGAGAAAAtGAGAAGtgagtacCTCCCCactcctcaga
gaaAGAGAAAAAGTGTTCGGACATATCTCGTGTCAGGTCGATgggtgcccgatcatcggcTGTGAgCACGAAAAA
AAATGaAATGAATGAATGaGGtgAAATGAAAAGAGGAAAGATAATGATAGccacaccgttgatatgagtctagga
ttacatgcacaacattccaagagacactttcattaggtcactactttattatttgttcatttattagccatatat
tctcgttgttcagattctagatattccgtaaaaaattcgaaggacaattgtctttaagaactattttaaaaactc
tgaataattttgatatcttaaaaacttgttttaaaatgttcaaaaagtacatattgcaaagatattgattcgaga
aatttctgctgttcgtaattgatttacctggaatactctagttggcatcctgcaaaatactacagagatatcaga
ttaaagcctgaaaaaatctgtgaaaatatttttgaaaaaggccgacaaacgggggtttattcattaaagcagatt
ctgggacaaactttccaaatcggttgtttctctaggctttttttgtaagttttctgatcaaacaaatttaaatcg
gtcttagtttttgtcaatttgaaaacgaaagaatagatgcaaaatttcagtgtttgaattctctaaaaccctatg
tatgttttgttttgcaaatttgttTTGCAAAtTcTAAAATCTAGAAatttATCATAATTgatatctgacattgtt
tgctgtttcaattttcagcctatttgtttttttaaacaaaaatcttaagatgttaaAGATTTTTTTCAGGATaTA
TTTTcaatatgcatATTTTtgtaTTTTCATTTTaGATTaacctataattgactgaaattcaaattgcaacatgCT
CATATTCTTCCCTTTTCCATTCCTTttagactCCaCCTCATTTCTATCGTAATCGTCTTCTCTTCCTCTCTTTTC
ATTTCTCTCTaTCTCCAaCTTTCTCTCATTTCTCTGCgcCTTTCCAATTcTCAATTTCCATCTTTAGAAGTGAAG
CCaggAGGCTGCTTCCCAAAAGTAGGCGTGGCCTTAATATGCGGCTTGATTGGTCAGAcacactttactccaata
ctaccaaaccatttccaacttttcatttttattcgaatgcccaattgttcattttggcgctcagttttggaagaa
cttttgagagtttgtttagaactgtcttcgaacttcggcttgttttacccgttgctcggactgattttgcaccag
aaaattaagagattgtaattgttgagctggaaatataaataagtgtttcgacttaaatctaattattttttcatc
cagtcttcaaacttctagcacatccagataactgtttagtatatgtattattttaaacttatttgacacgagcat
tttcaaatttatataaaagttagttctaatcggtgtactaggtattaaactcaatgcttacaactgtgtttttca
gttgttgtgtcaaacttttcgattgaaaaagttatagaaatctggagcactgtttgattacaatttacatctttc
aagcctattttcagtttttcaaaactttttcaacattttaacataaattttcaattataaagtcgaattttcgtc
aaatttggaggtttttcgcgcaccctgacgttgttattttggagttcttctttcaagccaaaTTTGAAAtaaTTA
CAcAAAAGTTCAAATGtTTCCctacattttatcataaactttcagttactttagtaaatgaaacataacaaCTCG
AAAAAAAAaTtAAAACTacaagacaaccgagatacgagctgtcagttaaggtgcactgctaatagaggcaatatg
gtatgcaaatatcatgtaagtgtgcaacactttactttttaatgaatatttttaaaaattttaatatcaaaagta
tataaatttggactaattgaaatcttaatctgtacttcactcgtttaagttggttgaatgtgTCTCCTCgttttc
cgtgtaaaCTTGTCGATTATTATCaAGAGACATcttgTGAAATATTGAGttAATAGaaGAGATTCAGAgTGTTTG
TTAAGGcAGATACGACACAAAATCATTGACGATGATTACCGTATTGCTTAACAAGAGAGATAGcAATAGAttGAG
gGAGAGAacaagtCATCCAAGTGGGCGCAAAATATCATCTCCCCACcccgctcactgtgctcctcgtttCCATCC
AAATGTTTGCCTtAAATTGCGCATctacaTCTaCTCTCTTCTCGCTCAATTGACAACCGAAAAGACACTGTTTGA
AACACtgTGAAACACACAAAAATCGGCTGCCcGGAcgTTCCTGCGTCTtgccgCACTCCATgatCTCTCCgtgtt
ctagaGCCCCCGAGTTTGTCTAATTGATATAGCGCAAAGTTCAGAACGGATTACGGTAATTGATGTAATCTGGTC
TTGTGtCTCATTTCCCcatccctcatcatatgatttttatgttcacctcttgttttaactgtttgtccttttcat
TTATATcatTAAaATTGTTTTTTGAtttgATATgttaATTTaatagatgggatttataattttgcatttcatttc
attcgacttcattttatcggttttgatttcaaccagtcttttctgaaacaaaattaaactatctacgtggttggt
gagtaagtctgccaatcattgtccaaaaagtcagaaatcttatcactgagtagccgagccgacactcaaagggca
tgcaagcttggcgctgtgccaagatcttgtgcaagcaatagagcaactttacatcatctcagaaattaaatagtt
ttccaattctgatacatatcaatcgttaaattttttaactgaaaattgtgtacaataaaatttgaactgaaatat
tgaaaaagccaagtttgggcgaggcttaattttgacacttattgcattacaaaccaaccctatttgaatagccta
cctgtaagtaaaaaaaatttcttcttaaaaagtaaaaaaAAAACATTTTAaaaatctttaaatagtctcgaccca
tatcttggccagTTGTGCgtttttgcatttaacatTTTTTGCACTTTtcgaaattCACTCaaatagactaacaga
aaaaaattattttttgtacaattacatattatccgttatttaagagcaatttgaaaggattttgatgaacaaata
ctttttttttaatcctacaatgagaggcctcccagacgcatcacatttttcattggctttcaaatgaatcatgta
tttttgtgaatccgatagaacttcagatttcaaataagaacTCTAATATCctgacatttctccacttgaactttt
ataaactactcgcaatttcgttcgaatgtttttgagtgatttgacaattgatttccaccCGTGTCAATTTCGATT
AGAtCCCCtTCATAAAATTGCACTTCTCTGCcacaattgcCTTCTCctcttgtgcTCTTTTCtcATTCGATGTAA
ATCATTTCGTCGATTAAAAAAAAACTTCTAAgCAGTTGTtTTCCTTTTCTTCTCggCATCTTCATCCACCCCTTC
CttGCTAATTGATGCGATATGAAACcATAATGTCtGCCaCCCgaccagtgcAAAAAAAgAAcGAGTTCAcTTTTG
TTCCggCTCTTCTCCAACACGAACAAACATGTGTTACCCATTAGATTTTTCAAAAAGAccCAAGgaATTTttgtg
GTGTGTGTGGCCcctctctctaatatctacaagaaCTTCTcGCTCTATTTCTCgTTCTTTTGATGACCGTGATGA
tgaCGATggATGATGgaaaatgaattctaagagtttgtattTTCTTGCAGATGTCcGTaaGgATTGACGAACCGC
AACTGTTCGTcAGTATGTCAAAgGAGCCGACTCAAGAAACTGTTAATGTTGGtGGacatcATGATGAttCaAGCA
GTAATTGTGATGAacGAGtTGATGATCAAAcaGAaGAGGTTTGGCTTTaTTTTTaacTcTTAATacggtgaccgg
tccgacacgatcaattattttgttaaatgcaggaaagtgtgcgtttataaggagtacggttacttgaatttttct
gactataatgtaaattgatggcactttttcacttctttattttgttcacttttttatttttcaatttgaacagtt
tttcaaagcttgataagtgagcaaaaagtattttcaatttacattagcaagatttttacgaaggcattttcggag
cttcaaaaaccacaaattcgacatcttgctttctttgacttttaaaatttgacgtcttcactgaatttttagtgt
agcTCGGATTTTcggAAAATTTAgTTTCttcaatatttattggcaaATCTGtgcaggtcTGAAACTTCTGAAAtA
TCCAAAACTGAcAATCCAATAAAAAAATTTCAGCAGAAATCACCTCCAGCtTCTCCCGATCTAaCAGCAAACCTa
AACGTaTTCGACCTGGAATCCCGgCAAAAAGTaGTtCAACGACTTCTAAAtTCACAATTGAATCtgtcaaaTCTA
CGagCgCCtCTcAAttTaCCaCCGATcTTTCAAGCACTtCAGGGTCCATTCAGTATTCAGCAACAGCTTCTaGGT
CTtGCgTCAGGcTTAACAGCaATtTCTCCGGGaCTTGAcGAcTATGAcGaaGAGAACACtAATcaAGGAGAACCA
GAAGATTTGACaTTAGGAGGATTCAGAAAAGAAACaTCAGTGAAATCAGAAGAACCATCAGAATCTGGtATaAAT
GCaTCtGGTCCAGCATGGTCATAcGAAGAACAGTTTAAGCAGGTTAGcCTTTTTGGgaTAAACCATgctttatgg
gcaaacgataggaatagttaaagttcaataaaaaaattgaataccgtatttcctctattagttaggcacctctat
tagttttgcacctccattagttttgcaccttaatagttttgcaccgcttcatttgttccctaattttaggaattc
aaaatttgcattataaagtcgttctaaaaattaggaaaactcttacagacttggtataacaagtcaaaataggca
aaatatgagtacaattcggacaatttttgcgtatcagtcgtaaaattcgtccatttcggttcataatttgtcatt
gaaattggtgatattatgtcataacttaatgggaaacatgagaaaaaacctgttcgaaaattagttttgcacctc
cattagttttgcatcaaattaggtgtccgaaaattagttttgcatgccttactaatagaggaaatacggtagtgt
taatgaaaaaatttgagttacagatttattgggttccaattttacaataaaacaataattaacaacaaccggaaa
atatatgatgagcgttttttctacatagtcgcggagcgctattgtcttcacaaaaggcaaatttcctattcgtca
tataataaattaaattactttgataccttttttgtgcaacatgtagattttccaacgttaaattaattgaaaaat
tgaaaatctagaacaaattttagaaatgtattcagaatttctcagtgttttcccccttctcatcttaATTCCGTA
TTCATCTCcAATTACCATAGtGACGAGCAAAGATGGAGAAGCattTTAGTTAATTATGTgTgCAACaacTTTCTT
tcgtagCTACCGTATCTCaagtgattccttgaAAGAATAGATGATGAAGCATTGTGTTCACACATTTACAAATCT
ATTGTTCACACCTtcgGAATCACTAATTCGCTTcgTGTTGTCAACTTGTGAGgggtaatatgagaaagagaaagg
ccatttgttttacctatgtaCAaCTAATCAATTATGAGTTAGATATAtACAATAAGtctcactaatgaattattt
atagtttttgattttgagatatattctgagataaatattatttgttagatttatttcagaaaatactagccaaga
tctggaccacgttaatcatttctcattggcatctagaaaaataaagaaaagttttcacaagtgtcagaccacacc
taatctaaaactgctttcaactagtctaggattagcttgattcctttgatttcaactttttttttaaatttgaaa
ccgatacagtactactttttaattttgaatcaatataaaacttgcattaaCTTTCtgggcggagtctaCGGAGAG
aatttGAGTGcGcaAGAGCAtTTGTTTgCgGAGCCGATTGGCTGCTCGAATCaaatAGATTAATAATGTtGGAAG
AAAagaatggaaaagcatagaacatgTGTGTGTTCaCTTTTTaACACTGTtATCAGCTGATTaagTGGGAATGAt
cagaatattagagagattaaagttcgaaacatagtttgtcatattttttctattagttgggcactccactccact
ttgaaagaatatattttggcgtatttcaacggtacaaaaggaaaacgaacaaaAAAATTACAGAAacaGAAATTC
CAAAtagtttgtttgttggctatatgccaaaacaaaagccaagggagatattcgctgttaaaattgaagaatgtg
gaaaaataatttatgaaaaatttccttgcaccctctgcaaatctacaattaaacaaccaagttcctgtcattttt
tgtaatatcaaacaTTATGTTTTTGgtGTTTTCAGAATCCTTCAATTTCCCCATCAAACGGTGGAGtATTCTGGG
AAAAGTTTGGAAGTATCGATAAACTTTCAGAGGTgcGTCATCGTGTGTgTCATTTTGAAgTTTTcAACAAAAAat
tgaagtggctacttattatagttaacatcaaAAACACACGATGACTActAAAAACTCTTTTTGTggataatcaat
ttaatTTATTTTcaaAAACaTGCTCTTTTGAtggGTTTCtgacagacttGACGCAATAAAATAAAACattttAAA
CATAATAATAATAATAATAATGATtgtaAAAAggGGGAATATAATGGGAtgaggaGGGAGAccaccAGAGTTTAC
AACATGTAATAATaGAGAGCAATAGcttcCCATCCGGGGggttgaaaatgggcgaagcAGAGGAATaataGAAGA
GAGAAAGATTAGaAATGATTTATGAtcaaaatatagaatctatatttgaatttagaaattggtggttatttatga
aattttacaataaaaagggggtttcttgcaattttgtccagaaatttgaaacttccaagtgaacctggaaaaaat
aaaaacttcaaaaaaaatccccaccaatttcctggtacctcacgaattttgcatagaacctttgcttgaatatcc
aggtaccgtaacttttctctaattttgttgtgaattatctaattttcttattttctctcatattgcaatTCCATA
tCCCAtttCAACCcaaatcaattatacTTCATTTTCTTTTTTCTTaaagtcggCTAATTGAGTGACTCGAACGAA
TATTTAATTATGAGAAgcttctaaatggAAGAAgaGAAGTTTTtgagtgggggagaaccattattgAGTATTACA
CTTATTAGTCATTACAAtaagttgggccttttTCAAAActAAATGGGCATGTTTTTGATGAGaGAAGAAAATGAA
AGAgggactttTGAAATAATTAAGTTTTTTTCAGTTGTACGAATTGTCAGACGATGTGAAAAGGAAGGAATGGTT
GGATGATTGGCTCAATTTCATGCATAGAATAGGTAAggttacacaaagaataagaaaaataataataaatttgta
ggtagtaagtagtaagtttaatcgtaagcccaaattAAGAATTTTtTTCTTCaaccaaaAAtTCCAACTATTaaa
cttCCAATTttataatctcacctaaaaaTCAAAATTTCCAGGAAAACCGGTaACACGAATTCCAATAATGGCAAA
gCAAGTACTTGATCTtTATGAAtTATATCGACTtGTTGTaCAACATGGCGGTCTTGTTGAAATAATAAATAAgAA
ATTATGGAGAGAAATaACaAAAGGACTaAATCTTCCaTCATCTATCACATCAGCTGCttTTACTCTtCGAACACA
ATATCAAAAATATTTATATGATTATGAgTGTGAAAAAGAGAAACTtTCAAATCAATCTGATCTTCAACAAGCAAT
tGATGGtAATCGACGAGAAGCaCCTGGAAGACGGACgGCTCCATCATTTCCATTACCtTTTCAACTTCCaCATGC
TGCAAgTGCtGCTGCAAcaATGCttaataaTCAATTAAATGGATTAGGAATGAGAAATGGTTtgtatttatcttg
tttatttttaaccaaaaaatccagaaacttccaatctctcctTATTaCAGAcCTCCTTGAcGATGAAAATACATT
aAGtCTcCAgGCttcTGGcCTcTTtGGAaCaaGCTATGGAGCcGAgCAAATGGCAATaCTtGAAGCTCATCAaAG
AAATCTaGAAAGAGCtCAGAGAGCTGttcaacagcaagtcgcgcgccaaagtctagggctcACAGCatgTTCAAA
TGGcAATGGAGGAAATatTCATAATTCTGGAAGAGAATCTACGTCTAGTAATGAcTCAGAcATTCCTGGTTTGTT
gaaaaatgattttttataaaatgaactcggaaatttcagcgaaaagaccaaaactagaaaatgacgtcaaaacaa
atggtgcatcgagtatgaGGATTAGTACAAAACATTCAGGTAtGAAAggaaacttaattaaaatagaagaaaatt
gctaaatttaatggtatttttttcacaaaaattgatactatgagagatacagtaatctgttttttcaatgttctt
caggtcgtggtaagaccgtattttttgtttaaaaaacgataatttaattactgattaataataaattttgttgaa
aaatctacaacaatttaaataaatagcttccttaatttcaataatttcagataactcAAAGacaTCAATGTCAGT
aTCAATGGAAATCAACGGAATCACCTATCAAGGAGTATTATTCGCTCTcGAcGAgaCaGtCTCaGAGTCTTAAAT
AATgtgTAATATTAATAATAtatcggaAATTTtgcatttttgagaaacacgtacttaaaggtgcactgatatatt
cggatgggtctcgccacgagaaagaatcaaaacaccggaaaaactagaaccataatttttcatcgtgccaaccca
tccgaataaatctgtgcacctttaagtacctgtttaagaagattgcagagtTACGATAgctcTTTCCAATTGAGC
acaccttcCGATTcTTTTTTgtTTCaatGATTCGCGAGCTTTTATGACAAAAGACtAAACGAGCTTTCTTCCCcA
TTCAAtTTATAGAttACCCccatctgattacacaggtgattcgccgtttgtaaaatacttatggcctccaatatt
ttagatgcattttgcaaatcgcgaatttcgctgcaggaccattaacattttagcagtattttggtaatcgcgact
ctcggtgatcgcaatttgcacaatatttgcgattttgcaagtattttactatatcgctggtgcctcttgtagaag
tgcgcgaactacatttcataagtattttaaaaaccgcgcatcacctgtgtttcctgaaatttcagattCTCCCCT
CTTCCGCCAAAAACCCTGTCTCCTCAAATTGAAAACCCCCAAAATCTCTAGTTGTGAGCTTATTTCATGGTGAAA
TCaatgTTTaTTTCcaacgTTTTTTTTTCATTcATTTTTTTtgaaaataatttaattttaaaacttaaaacaaac
tctgcccgTTCCTTATTCTTTATCATAATTATTCtgAGAAACGCTGCTTAGCACGCAaAATAAAAACTCACAAaT
ATTggcacgaaaatagAAAACAACAAAAAAtgGAAAAttgtaacaaaaatgtatgacaacaacaaaaagtaacaa
gtatttgtccggaaccgtataattgagaacaagatctatgaaaaggtggactgtaacaacaaaatataacaataa
gaacgacatcgtggattgactattagaaaaatgggatattgaatatctgtaaactagtgtgaaaaatgagaaaat
aaatagataaatgactttttaaaagacccgcatttcgggtgagtatgatgtaaatgacgagtaagttgaaatgta
aatgacgtagaattaggtgaatgacattccatcgttccgaccaattccctgtaattaaaattcaaaaatatttct
caattttttaatttttaaaaccaacttacacacaaacggaatcgttccataTCAAAATTCTCATCAGCCATCAAT
ATTTTTGCTCgtTGAGCtACtAAtTTTGCATAGTAtACTGGCGAAGGAATGGAgACGCTTCTtGTGCAtCtgGAT
TGaGTGTGaCATAgCTGAAAtggtgattttatatgaaAACTTTTTAtcaaatctattaCcTGATAgGTCATCTCA
TgaatatcggcagatggtattgaATTaTCGTCCCACATGACaACATACTTCGTcgGGCGAGAaGTTCCTTGAATt
CCtGCaTGTGAtACGAGgTAGAActcgaagagaTTAttcACAGTGATTCCtGTTTCCACgAGaGTTCCAGCTGGC
ACATTttgACTATTTCCgAcgcGATCCTGAAATTgtttgaaatttttatgaatagggaatcgtttttgcgacTTT
TTTTTTGAAAAcCGGAATTTTCAGTTTTAGAtGTTTCcTTTTCcAATTTTCCAATTTTTCgTTTCTCCAATTTTT
ccaatgATTTTCGGTATTTCTCAATTTTTCAAAGAACTTTTTTTTCacatAcAAATTTTTTTTTGAtAAATCAAC
gtTTTTCCGtatatTTTTTCAAAATTTTCcAAAcAAcATCGAAAAATcgagccttgGCTTCAATGTCTTGTTTTT
AGTtgcagttgccattacgattgaatccgACTTTTTTattttggaaaacttaaaatggcctatcaaaattgcact
cattctataatttcgaatgtaatttatggtggaAAAAATtAAATTCAaAAATTTatgAAATTttcgttAACATTt
ttttgttgtgAAAAAccaAAAAtacatTTTTCGCCGAAAacaCGAAAAATCTacagttctggtTTTCAAAcatAA
TTTAAAttaTGAAAACAAAAcAAACTTTTTCATTaGcTGCAAAAAGtCTcGTATGaTGAGTGACATCtAAcCCaA
TAAAAGTGAtTCCTGGcTGGAAAccgTATTCGATCATAGCAcatgcatcccgtACAGCaCGTAatTCcGTTTGCA
tgATTTCaTCGACAGTcaCaTCtgCGATTCCAGCaCGATAAATGAtaATTTTGTGgGGTTTAaAtCCtGTAGACt
TtcgGAAaTTgAtAATaGCtTCacgtgTCATTTCACACATaTCgACaATaGTtcTttgaTGACGTGGTTGagTaC
GaAAGAtTGGAGAAAACtGAGTaGGATGTCCATCCATTGAaCCGACgAgACAAGCgATgGAgGaaTCAcaaTGaG
cTATAGAAGATGTGGAATCAGAAGATGAgGcgAgTGAAcTtCGAGtTAAATGACATCCGATAAAAAGTACTGGTT
CaGAATTTaGAGATtGTGGAGGAGAgGAtAggAttACATTAATgCCTCCGAGTTTCGAGTTGATTTTCATACAGA
GATTAGAAAGAGTGTGTGGTGAcgCTTTcGAaACATTtTGAGatCGAACACATTGAGTTGTCAAACCAAGtAGcT
CTCCTTTTCGTTTCAAtTCTCCATAaACTACAGATTTTCCgGGGACAATGCATAaaACGAGTTGAAGATTGtatt
gttcattcaaatgttcgagaagcttcacagtctggtctggttctgcgtatctgaataaggtacaattataggttt
attaagcagtttctatcggttatgccgatatatgcacattaacaaaatcctatttctatttctcatatttctata
aagatttagggaaaaaaacacagcgatgagaaaagggggatttttacatgttattttttaaaaaaattttaaaaa
caatgtgccgcacatccctgattccaataaaatcgagtaaaacattctccggACCTGCAgAAtcggtgttctTCG
aGAAAAGGCATTCCAATTTCagaGGCaACaTTGacgAGATTTCTGACAAATGAacGCATgctggcttcTCCGATa
aTCTCTGGGCTtGCGAAACAAACAAttGCCCATTCCTgaaacaTAATTcgctgatagtttgttatttaaataatt
tatgagtgttctacaaagaaaacctactcgaatctggatTCCGctgTAAAAATTCTTTCCTCTCATATCCCATGT
TCCATTATTCGGAacTGTTACACACTCTTGTctCTTCAAATTTGGggAACgATAgAgAAGACGcGGaaCcGGcAa
gACaCgTCCtTCAATCtTCAaCAatTGAgCTTCaACttttAaTCCAAATTTaaccGCaTtgacATCATtATcCAt
TTTcAgCCGATTCTGaAgGCTCATGACtGCATTTTgtCGTTCaGTTGCATTTCGGCTCGTTGCTCtGATCAGATT
tGCaATCTGTTGTTCATTCAgTTTcTTgATaCATCGTTGgCCACTGACtacgtaacaaagctcCAAAGGAAGAAT
aCAtTCTCGAgTGCGTCCAACTTCaATaCAcGGAAGATGcttATAtgTCAGaTCGATaTTATAACGCcTTTTatA
GTAttcAACCAaTGagagaggtttagaatcttgattgccggcagtctcggAGAGATGGAAACtAATATTTTCAGT
TGGTTTCCAAGTGCAaCggGCGACaCGAAATCTTCGTGGACAActACAGTGTCTGGTTTCAACTTTgAGTCCgGC
cACTTCaCggTTGAACTTTTTCTTtTGaaCATCgCTCAGcGaACGTCCgTCgGTgACtGTTGCCAgTGGAACTTC
cAGAATTTCaGCaAGgAAtTCcACgAGAGCcAcgGGgCGgTAGAAtGTaGTTGTtGCaACgTCgAGATTCATaGT
gAgtgTATCgAATGTCTCAACAACATTtTGATAaAAACCgTAgCAaACTTCTCGTCCaAcTCCTAAATTgACAGT
TCCCCATCCAAggCCAtGcGAgGgTtCgattgcagAATtttGTGcAATTGAGAAGAAaGATTGaAGcACgGcaTG
gAAAtTTccaGtaGAaGTTTGaCGGAAGAcAGTATCaATtGCATGCATCATtCGCAaCTTcTgGTtctGATCCtG
ATTTCCtGTGatACTGAAAAAgATTGaattaaaaacAATGAAgaagGTTTTccaagtaaaaactcACATTtTaGT
aTCCAagAGGAAGcTGTCgACATgtgttagatagAGTTTGAATaGATTaGGTGAtTCTTTTGTATTaAcAAcTCC
TgcaACaTTgAtgActgaaTtAttcAcTTcCTtgAcaTtaATcagcTctGTTGagTAcAcaGTgTgaAtTCCATC
GaAaACtAacgggcAcTCgaTaAGTcCgggAttcTGTTCtTgCAgaGttctcAaAATcgTTCTgTTcAGCTTTTT
CGAcGGAATatcTGGATCGAaTCGAATatagtattgatgaataatcgatccattgcacgtgatttgaaaatgatt
ggcgagaagtgataagaatcgtcctgtagtgctgggaagtggctttcctatcaatttgaatggctctctgaaatt
tttaaatgttttaattgtaatttctcaggcattcacctgttttcttcaataggatgcaggtagagatcatcggaa
actctggatccagaagaactgctgagaaactgaaaacaattttatgtaatcagctaaatccgaattttcttttta
aaaacctcattttccaaactgggcacgttgatcgaagtacttcttgatgaagtggaactcctcacttttaacttt
tcgaccaaatcaTCATCaTAAATtGCCGACAGCAACCATTGGTCTTCCATACCTGAAAtttgttaatttaaaaaa
actcaaactggaaaacgcaaagagaccatcggcaatgtaaaatgcacg

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3225
3300
3375
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4125
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4275
4350
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4800
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5175
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5325
5400
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6375
6450
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7125
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7350
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7800
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8325
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8475
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9000
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9225
9300
9375
9450
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9600
9675
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9900
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10050
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10200
10275
10350
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10500
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10800
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11100
11175
11250
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11400
11475
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11700
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12000
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12375
12450
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12600
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12900
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13050
13125
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13350
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13575
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13800
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14025
14100
14175
14250
14325
14400
14475
14550
14625
14700
14775
14850
14925
15000
15075
15150
15225

Enhanced BLAT Score Card

 (Back to Top)


 Nematode EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: cfi-1 locus
        

     Reference Genome: C.elegans
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              C.elegans
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            15198
            1
            15198 0 573 
  
           
            628
            6033
            10774 0 
                 0 /
                 55
               
  
           
            623
            6034
            10776 0 
                 0 /
                 50
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.brenneri
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5056
            171
            15133 2 59 
  
           
            4748
            171
            15133 3 
                 290 /
                 4399
               
  
           
            196
            242
            12027 0 
                 137 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.remanei
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            3840
            172
            15144 2  
  
           
            79
            10115
            10205 0 
                 3 /
                 76
               
  
           
            164
            1765
            9141 0 
                 99 /
                 65
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.briggsae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            3373
            172
            14016 0  
  
           
            270
            5479
            12327 0 
                 242 /
                 4
               
  
           
            173
            1932
            12112 0 
                 149 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              P.pacificus
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            138
            148
            4288 0 24 
  
           
            116
            2077
            11223 0 
                 60 /
                 23
               
  
           
            98
            256
            8131 0 
                 49 /
                 16
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
C.elegans cfi-1 locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the C.elegans cfi-1 locus reference sequence that are conserved in the C.brenneri and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

C.elegans cfi-1 locus Genomic EvoPrint (Back to Top)

Black capital letters represent bases in the C.elegans cfi-1 locus reference sequence that are conserved in the C.brenneri and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

cfi-1 locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri or C.briggsae.Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Enhanced BLAT Score Card (Back to Top)

Nematode EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile

Black capital letters represent bases in the C.elegans cfi-1 locus reference sequence that are conserved in the C.brenneri and C.briggsae orthologous DNAs.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
