Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
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Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  C.elegans deg-3 locus Genomic EvoPrint
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      Black capital letters represent bases in the C.elegans deg-3 locus reference sequence that are conserved in the C.brenneri  and C.briggsae orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 3' --> 5' direction)


 gagaaggaaggcgagagaagaggcacaacatacctgtcagaactctatacccaaaacgaatattttcagccagta
gtggtcagttcatttcagttcactttataatctttattcaattcacctacgagtgccttttttattgttatttgt
tgttgtgagtatattgtgtatataaggggagagagcgggacaaattatacgaaaattcggttggagaagtggttc
atggaccacctaaaataggaaaaagcaaaaattgaaaaggaaagaaaacaacaaaaaaattaaaagaaaattcaa
gcggctcaccctccccatttactcctcccattttcagtgctctctttccctccgactcattcaaaaaattttcca
gtgaccattcattgttttcagagacaaccccactttttggtccacacaacacacatttacttttactacaggatg
cttattattattcaaagcttgctattggctacaacaggtaaggattttgtaacaaaactgcaggcttcaaagctt
gatgcctggtgaccatcatactacaaagaatagtgtttgaagagttccggattgttagTCATCATCActCATCAG
ATGTTAATTTACAACAAacAAAtATCTTTCTTCTTTTTTcTTGAGGACCTagagaccctcTTGCAACAAcAAAAt
GTAGTcgAAGTaGTActaaaagtgGTgGTActcctCACCATTTCTTTTTTCATTTCCTgAAAAGTGTagttagag
tgggaagaggggtCAAACGATGCTAATCTTAGTGACAGgaAaATGATGAATTTTCAATTGaaCTAAAAGCCcAaA
ACCTTTTTtctcctatccgtatttggttgattagagtgaaatgaacaagagcaagaaacagtcgtaaaaccagcc
atcagtttgattcaagatgacaacgaaaaagattcttttagcatcactatgcattGCCGacactcctgtaCCAAC
aCAgATtcgacttgtaCATGATCTACTtGACAACTACGAtAAAAAgGCaAAgCCAATGTGGGATAACTCcAAgCC
AATtAATGTGTCgTTTTCGATGGAtCTCTATCAaATTTTaGAGCTCAAtGAaCCACAACAATATATTTTGCTCAA
tGCtTGGATTATtGAGGTgggactgaaattttaaaattgaattgggagaatatggcacgagcaggcacgacattt
ggagtgtgggttgtgagacagttttgatcaaattctgttttatcagccttggataatttcagtgtttttctgaaa
ttgttttgctatttcttgagagtattgcttaaatatctaaagttgaacgtcagttcattcaagctttcaaatatt
gatattttaaatgttgaactttacatttttttaaatttaattttcttcaatttgttgcaatttccaaccttttaa
atacacttaatgctgtgtgagatatagcctttatttggcatttgatcaggattttttgaccttccgagtaactat
ttcgaaaatagctggtgggtgttttcaatgaaacaaattcgacttaatgtcatttggaaaaccctatggttagct
gatgtctacttcaaatctaaacaacGGAtATGACGCttgctcgTTGAAAAAccaacggAAAACgAgCGGAAATCc
ttAGGTGTTCACCAccTTTTttttCGGaTGATAGAGCAtTaCcCaAGCAtGTaGAAGTTTGcTGAGAAtTGTGCA
AAGgATAAGAAAAAATacgttggaagcacaagaagactaaaatctttcacaTTTTTTAGCGATGGTTCGACGAGT
TTCTCTAtTGGAATCCgGACGATTAcGAaAATATAACGGAGCTTCGcTTGCCgTAcGAcTCtATTTGGTTACCAG
ACACCACaCTTTACAATTCatTGGTaATGAAAGAcGAcGatacaaggagactattgaactcaaaacttacaactg
acacacatcgaagagctgcattgatcgaacttctatatccgacaatttatAAGTTCTCATGTCTacTcGACcTcC
GgTTcTTCCCATTtGAtGTaCAAGTACGTTTTTTTTTCgtaCAATTAGgttGTAAACgtTgacagCTAAACTcAT
TAgTTTtcgtttttGAGAcCAAAAtAAAgAATGTTCTTGttttTAGGTCTGCACAATGACcTTCTCaTCTTGGAC
aTAtGACCAAAAAGGtATaGAtTATTTCCCaTAcTCgGAtAAAATTGGAACaTCAAACTAcTTGGAaAACGAAGG
ATGGTACATTTTaCAaACaAAAAGTGAGcatttaaatgactaaatcattaatgaggttttcaaaatatttttctt
cgTTTTCAGTtaaAAGAcagGAAGTGAAATACGCaTGtTGTCCaAATAACTACACGTTACTGCAGTTgACGcTaT
ATCTTcggAGAAAAccgttgTTCTATtTaGTCAATcTtATTATtCCAACaTCgATtATtACtcTaATtGCTATtG
TaGGATTCTTCACGTaAGTtttaacaaATTTcAAAAAAttaattatttaaagagccatgttttcatatTTTCAGA
ACaTCaTCTGCaTCaGGAATGcgtgaAGAGAAagtatcaTTgGGTATCACgACcCTTCTtTCcATGTCCATTTTG
ATGTTaATGGTcTCcGATCAAATGCCtacaACaTCTACATTtATtCCtCTaATtGGATGGTTcATTCTaGCaATG
ATAATaGTGATTTCcCTaGGAACcGTtGTCTCaTCcGTaATaATTGCCATtCAAAAACGAGGAAGTCTTGGcGAG
CGAATGTCCAAaAGAGCaCTaAAGTAcGTGaatgcTTCCTaagTTTTTTTTTgttgagttgctacataatgtttt
gtTTTCTATTttaAGATTTGCCAAAGTtCTTGCaTGGTTCACATGCACATCgtTgCCTCCaCAcGTtGAGAAAGA
gCAcATGATGGAagcttttgatgcgcCgACgCcattgGTAGAAGTtCGtccactgCAACTtGCaAGTGTtAAAGA
ATCaGTTCGgAAtAAaTGGGTCAGTGGAGCaCGacGAGCaACACAACGaGGtAACAGTGGttTaGCTCTtAttTC
tGAcAAgAGcACGGATCCACTtATTCATtTaTCACCaaCaGCgCATCAaCcAGGTAGGcTTtagtatcttatatc
atatcatgtTTTAAatgtaTTcCAGATGAATCaATTTCaccttcagctccaccggtTCCATCatCATCTCCtCTT
CCtCCtCCAttAACaCCtGGACCaGCTGATGAtGTtGTaTCgGTgGCgTCAGAattatcgTCAAAaTTCTTGAcG
AGCAGAATGCGCCccAAGTCACAaAAGgacaacACATTTGCcGCaATGCAGAGTaAGTcttattttaagaatcaa
tattgtactacggagccctaacggagcttgaaataaaaacggcactgagtgaaatgccaagttcaaatagcacgg
gtcttagggaataactcaaaattttaatcctcgttccgtccaaatgttgctaaactttagcgaagccacttttta
ttttgagagttcaaaaaacgtaattgtaggggCTGGATTgAGTCGAaGCTCaaTgAGACAAGGTAGGTCgtgttg
tacggttaaaaaCTTcTTCtATCactatgtttgataacgggtttgatctcgtttcaatatttcagttaatttatt
taatcggcttttatttgaatattagctttgcatccaacttctgcgttttcaatgtttataattttgtaatcaata
tatcgatagctgaaagtggaatattttgaaaagtgatacatttcattttgttaccaattaaatgacatttcatta
tgcaatgttaaactaataggaaactcaaaatcacatgttatctggaaattcgtattgtttacactactaacaatt
taactagataaaatcaataatatcaagtatcaagtaaattgtgttttactcatatggttgtaatttttttagtta
tgttaattttttattaattccaatcatagagagttgaacatagcaatgtgtaatctactagaacaatccaaccaa
ctagaacgggttcgacaaactggtacatagggtcaattattggctcaacatggttgagaaacactgatttctagg
aagcgttgggtcggcacagggtagcattttgtcaaacctccatcgttctagcaattctataaaaaacactagaaa
atagttctaaactattgaaactactggagaaatttttcacagtttaattttgaagcttgcggggttgtacaggtg
taacagaagtatcgtaagacatatctagtaatatatatatatatacatatgtgaccatatcattgttgattcttg
atacttcatatccacctaaagccgtttaactaaatttcaggctcaataaaagcaaatcgacagctagcagttgcc
gaattcgaatggtttgccaCAGTTGTgGAgAGaACgTGcTTTGTCATaTTTgtaGTTGCTTTCCTaATAATCACa
TTTGGAATCAAcTTCATtGGtTTcaTtCAcTGGCATCAaGCTGGTGTTGAATatGGaGGATgAAcATTCTcattt
tcatcattTTCcaaaAACTCTTTCCTctcTCGGTTGCTATTCTATCCcccAcACAcATGACGCGGTTtCTGATAC
TCTtTTTTTTTTCgTTtTTCttATTCCATTTtctacTTTTtttagttttgctttttaataaTCAATTCACATTTt
GCTTTcatattgttttctatttctgtctgtactatagattTAATCAcTTTcTTCtgttcccaatttttcGCTTaA
gcTTCaaTTTcaTTTCTCttCcTTTtcCtatcttgaccttcttgaccaacaatcctaatTCTttACgAATAAATT
ATTttTttggctattacaacatctcaTTaTTTccacttctcccagtgTTaTTTTCACTGTAcTcTATACCTttac
cctaatagtatTTccaTTTTctttgttttgtccCTAACcaaATTTTaCAGGTTAtATGccAGaATGACGTTAAAg
attcggacaatcattattttattttgcgtgatttctgtcACAACAACGTCACAgTCACTCAATGCAACCTTAAAg
ACaTTCGGTgagtattcccagactctttcaataatttacgaaacgttcCAGACCCcCGActgtTaAACTCGACGG
CTGATCGAGAtATAGCaATGaAaAATGTgCCaTTagTaCGatTaACgAGaCATtTatTGTCaCCaGAGAGATATG
ATGTgCGtGTCAGgCCgATTCTTGATCACAAGAAATCtCTgAAAGTGCAtATCAGtATATCaCTcTATCAGATcA
TtGAAGTGGTGAGTtcatcaacaTTTTcaattaacAaaaAATTcaaaagAAAAATTctaatatTTTATTTTaTAT
TTcAGGATGAgCCgTCtCAAAATATtAAAtTaAATGTtTGGATGATTCAAAAaTGGAgAGatgaaTATcTtGAtT
GGAATCCcAATGAATaTGGAATGATCAAtTCaACaATtattccattccaTCATCtCTGGATTCCgGAcACtTAtC
TtTAtAAcAGtGTgAAAATGAGTcGAGATGAAACtGAAAGATAtATGAAcATtCAAGcaACTTCAAAtTATTGGA
AaGGAGAAAAGGgagctGAACTTTCaTTTCTcTATCCgGCAATtTACAcgattacttgTCGAtTaaatattcgat
tTTTCCcgTAcGAtcGACAaAACTGcACACTGACaATaTCgAGcTGGACaAATTCAAAATCtGCtCTTGAcTAcT
AtGCAGACACcgAAGTgAGcATGCAATCATTCATTCCAAatGAAGAATGGCAGGTgAAGTCATTCaAAATTCATA
GACAtGAGGTaaaaaTTGTTcTCTtgtatttcttaagACCAcCAAATCcATCAATTTCAGTACAAATACGCgTGT
TGtGCcGAGCCATGGGTGATCCTTCAAGCcTCATTGGTTATTCAAcGAAAACCtCTtTACTACCTaGTAAAtCTt
ATtATTCCAACATCaATCATTACttTaGTaGCtATCACTGGATTCTTCACTCCgGCtTCtACAGATGATGAcAGA
ACtGAaAAGATcAATTTGGGaATCACtACaCTTtTgGCAATGTCTATCTTGATGTTAATGGTGTCtGATCAAATG
CCaACtACtAGTGAATTCGTaCCaCTtATtGCTTGGTTcTAcCTCTCaataATCATaatCATcTCaATTGGtACT
TTccTtACAAGTGTtgtacTTTCTGTaCAAGGACGTCGgCAATAtGGAAGaAATCCtCCaCAATTCATTCGTTAt
ATCTTCTTCGTTcTcCTTCctcaagtcctattgctcaatgtaCCTCCACCaCTTCAaACtCTTTGGGGaGAaCTt
GATGATGAtCCaTTGAATGTTCGAAGAAGgaaaaagtcacattatttatcaagaaatgtgaataatGGATCaACt
AAAATGgcATCtCCAATGTAAgtttcatttgataactttacaatcTTTGAAaaacaaaataaTTTCAGGTCcACa
ttgcgaGTgCCaCagTCgGCtGGaAGtgtTtcTGAaAAgCGgCAATCCTTCCAAATGATtGATGTaACATCTCCA
AAtTCTCCAAAtacagccaggtcaCGTGCaCCaTCTCTTGCTCCaTCaACtGCcAAAGCTACaATGTGGGAgGGa
ACaATGTCagcactTGCtGGTAAgctataaatgattgaggcaatgaccttaaagttaactTTTcAGGaACAAATA
CtCAAtTaCGaAGAACTTCcAAtGTaTTCAATAAgGAaGTgGAcGAgATGcGAAGAAAAcGgCAgTGCTCccTcG
AaTGGGAgtTtTTGGCaACtGTatTgGATCGGTtAGTgttcggctAAAacAAATttatatgcttacacttgaaat
aattttcaaatcaaattttctcaaactgtccaaaaattaatagtaaagaaaaattgtttcaggttcctgttgata
gttttcgtaggagcagtcgtcatcgtgACagCTGGccTcATtCTcGttGGcAGAATGGCaCAATACAGTTAtGAc
CAcCcgGATGACCgATTcTTtaATGTCTAAaacttatctcttttttcctaattttatccgcatttcccccaatat
tttcacaTTTTTTTCtctctcacCCTCATTTCtgTTTTCcatTCAATAACTATGCGAtGtgTACCGGTActTTGC
TTGCTATCTGGTTattttttTcAATTTTccACAGAaTTCTATGGCTTTGATtcttgttctcaatttttaatgaaa
atttttatttcgacggaaaacattattggtattgaaaatgagaaatactcgttgagaaatttattaattaaatta
ttagaaaacataattatcaaattgatttaaactatttaaactatTCATCGTCtAAtTTCAaTTTgGTTGGAGGcT
GAAgGAAtGCGAAACAtGCcACgTCaTCcTTAAAcCcgtcacaatatttctgagacgcaacgACGAATGAaAATT
CgCAtGGtGAaCAGATtACgTTaAAATGTCCgCCGAAtTccTTgTTcGCaGCTTTTTGAATcTCTCttTTgGAAc
TTTTTGCATCccTTcTGATGTTCTGAAAActtccgtattgttagttcagcctgtgcaacaaaatatgaacacatt
gcagccgacatatcactgtttcatgagagtttgaacacatatctCAACTCACcTCtTTTATCAATTTtCTCAATT
TTTCATCATTgcagtTtTCtGTCTCCGCTCtcttgtgccttaTCGCtcttGTCATgGGAGatGCGTGcAaaGAaG
AGTCaAtCTGCAAACAAaCTTTTTtaactgctgccaaaacgtcaaaacgtgtGGTCCTGTGGTGTAGTGGTTATC
ACGTCTGCTTCACACGCAGAAGGTCGcCGGTTCGAACCCGGCCAGGACCTACTTTTTaAATtttccagcaaaatt
ttgatattttaaTTACCTCtGTcCTcGTtGCAGCtTCtTCcaacaacTTTACtGGACTtGAaTTtTCaATTTGAa
tggatatttcgTCTCTCatgagCATCAaCATTCCTTCCATTTCTTTCATcAtaTGaGAgATTCTATGtaacccat
ttactctgTCaGATTCgATtgGgggactgaaccgaatttcagattttcttgttttatttgtgctaatttccatta
tttcatttttcatcctttgaacttccttcgcgttcaatgttggcaaaagcttcattGTTTTCTGAAaataaaaaa
taaactttgattttataacagaaaaacaacctgatgatcaaaacttggagttggctgaaaagtcgatgttTCTTC
aTCGTCTtCaTCaGCAAacAaTTTaTGTTGAGAaATTTCAAAAAgtcgctgaagtgcgGAaCATTTtACaGTTTC
aaccgatgcattgcatggagcccgtggagctggacaactgggtccaacaagtggacatggttcttctatacatcc
acaacaacacaactcagttctgacaggagcagttagtactgatgggataatgaagacaattaatagaagtaaaat
ctgaaactttaataattatttcaatcggaaagcaagaaaactcaccattgtttttttttgttctttttgggtatc
ttcagacagggataaaacaacaatgAATCCGtTTGACCCctttttcACTAATTATGTACACACATACAAGTATAT
CGcCGACCCAcaTTGAAACCAGTctaACTTTCtttttttctaaagatacGGgTAAAGTTaATTTATtTTcatgag
aaaaataatcaacatatccctaaactggttttttttgtttgtggatgaaaaataaagtattatgtaatttttgtt
taaaattattttgttcgtgtcgcgaccgggttgtattttttgaatcgcttcttcttctggatccattgactgaaa
aaaaagaaaattcaattaagattaaaattattttaatacaattggtacattagttttgctcccactaaaccaaat
ttccccgtactatgtatttccctgtaaacttaaattttattagaaaaatgatgatggctgaaattgttctaatca
gaaattaccagttctcatttttgttctattttttgtatcTCTTATCAaGATGtCCTTGCCactccaaccactcCa
AATTCgcTAACCACAaagtaTTTGACGGTCATcTTTCAaTTTGaTTcCCAAaaTTTccaacgtcctacttgATGC
GtTATTTactgttagtttccatttttatcgctgatgttatagctgaaaatgaaaatacaactgttgaatttatgc
caattggcaaggatatcacggtggcaccagttaacgctgaaacgaggaagcctgaaataatatcatccagAGTTT
TCAAAGAAGAcGGtATAAAATAcACTGAAATtatacgaaaaacatcacccggtgctacacaaactgttcatatca
aagtggatgaggtaagttctgaacttaaatattgataattaatataagcaattttagaatccgtcgatattgcca
gtacctgttccaaatttatcaggattaatgaagcgacttcaaacaacacttgcaaagaaattggaagtttcttct
cgtgaatatgatccaccaataagaacaacaactcctgaatattttcctccggtaacggccacaattgtacgggca
gaagGGTGAGTTTTTaccaaattttacaaacttaatacaaactttgcaaaactgtgatcgggatcagaatatttt
tatactacgttctagtattttgcaaagagaaaatagaaccagtcaacaattaggaaatgatttgacattcaaact
ttggccctgttaccacaataaatggaaagactttaaataaaggaaaatagtttttttacgtttttaagagcgaaa
cttaaaaatcaaattgacacagttttagaaatttttaaatatagttcttgagaaataatataatttttaaaaaaa
gttttggttttgcaaagttcttgaactgaaaaaaaggtttgtgattttatcaaataattttaatttaaaactcat
gtgttcaaagtaaactctgctttcagacattccactaggacgcaacgcacgtttgctataatatttacgtaaaca
agtagattgagccgaatttctacagcatatgaatgtatttagacaaattatgtcgaaagtgttctttccgtgaaa
aaaaacatgtaatcacgcttaaggaaaaaatgtaatcacgcttaaggaaaaaacacaaaacaaatgatttccgag
taaatccatatgtgcatggtatggaaatttggcccctttcagtcacctttgcttattttgcagagtttttaataa
aaagttgaaaactgtcagtttacattccacttttaataaagtaatgcagacacagttattgagaaataatagtaT
ATTTCAGaCCaattaatcaacggccaataggatttgatccactgccaaattaccagtacccaccTCCTCCtTATC
CaCCAATGATGTATCCTCCgcCgtCgtAtAGTcTGATGGGAcGAGTtGGAAGTATGACTGatAacATTcTgGATA
ATGTcATGGAATTTGTgttaggacgtcgacgacgctgaactattgcgaAgAtTTgaTTTATTTTTTgttgcAAAA
TgAAGAAAATGACAacttgaaatataaAAAGTCATGAAAAgataaaacaaAAATACACGTAaaacgttTTTaAGA
AAAGGCGGTGaaggAAGGGAAAAtaacttaagactgtgggtgttgggaATAaGTAGAaAActtAAaAtGtGAGTT
AGGAtttaattgGGTTAGAaAcAGGaagtTGAAATTCTGATTCGAAGACACCGGCTCAGAACTGAATtGGGcATA
AAAAgTGaGTAAGCAAAgaaacaaaattagaaaaaaaaacaaatAAagcAAAAAAGCAAAATCGATCGATCTtAA
GAtTGAGAAgGAAaCGAAtgaaagGATCAGATCATCGGAAATgGGAGAgatttgatAGAAAGGcatgAAGAcaGa
TTGaGCAGATCATCTaGttTGaCAtCCGACaAATTCaGAcAgtTTCAgCGGATAtTCtTGtACtACtTTGAAcTT
CTTcGTGTTGTAaACCTGAAAaattaacataaaagatcgatttatatttcaacagcaaagttggaatcctattga
aaattgttactatagagtcgctatcgagagagttatgaatgctctaaaagctgatacgtatgctgaactcaagat
ataaattttcccgataatttcggcaattggcgttctctgaaaatttaaacttatcggaaattgacggggctgccg
attttcgtaaatataagtactgtttaattgagaatatcgccagcggaaaaaagtggccgactgccgaagatttta
atattgcggaaagaatACCTTtAActtgTTTGTcTTGGTGTACATcAaAAGTGTtTCTCCaGCTCCgTTGTAcAC
gATTCCcAGtAGATCcCttGGcAGATTtGGGAAatacttgcGtGTGTggCCtGTGAATGTgGCtAAGTTCCAgTA
tGCgTCGTAgATGATGAAgTGtTCACCCTGAAAtcatttcaaccatgacaagaaggttttcttaagattgatatc
AACTcACACTgAGAACaACTTGaTTTCCATCGGCCCATTCaAATGCTGACAatGGATgGATtGTGATgTTtCGgG
GAAGaTCTTGtGGgGTaTTTTTcGCCAgcTGGAATCtacgaTGTTTTCTGTTCCAaCGGAATCTGTATGCAGTtC
GTCCaTCaAAGAGAATtGTgACtCCaGAtCGaGAaTTtGTCAaTGCgGCgGTcACAGTTCTcGGTCCtccagcaa
AGAAtTCACTGATcaagtaagacgcttTtTGTGGaAGTCCgTCtTCaAACCAaATTTGataaacCcTTTCgCGAG
CaaAaACaTAgGTTCTTCCATTGatTCCcTTtGTaATTGcatcgaatttttcaggacagaCATCAAAtgacagag
ccattgctttctttggaacttcagCTTCTTTCTTtttcGGAaCaACATGAGTGATTCTCCATGGAGCaaggatca
AgTCACGACGTTCACGtCCaaggacgactttctgctgacgatgctgcTTGTTTTTTcTaCgaCgGActGTTGGAT
CtTGtccactggcacgaatcatttcccatttggtctgactattcatacgtggcaaagttggaacttcttccgaat
ttacttcgtattgaggtgcgtcatctttgtcgtcgatcatctagaaaataagtaatataacatt
  
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deg-3 locus Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

gagaaggaaggcgAGAGAAGAGGCACaACATACCTGtCAGAaCTCTatacccaaaacgaATATTTTCAGCcagta
gtGGTCAGTTcAtTTCAgttcactttataatctttattcaATTCACCTACGAGTGCCTTTTTTATTGTTATTtGT
TGTTGTGAgTaTaTTGTGTATATAAGGGGAgagagcgggACAAATTATACGAAAATTCGgtTGGAgAAGTGgttc
AtGGACCACCtaAAATAGGAAAAAGCAAAAAttgAAAAGGAaAGAAAaCAACAAAAAAATTAAAAgaaaattcaa
gcggctcaccctccccatttactcctcccaTTTTCAgtgcTCTCTTTCCCTccgactCATTCAAAAAATTTTCCA
GtgaccaTTCATTGTTTTCAGAgAcaACcCCACTTTTTGGTCCACACAacacacatttacttttactacaggatg
cttattattattcaaagcttgctattggctacaacaggtaaggattttgtaacaaaactgcaggcttcaaagctt
gatgcctggtgaccatcatactacaaagaatagtgtttgaagagttccggaTTGTtaGTCATCATCACtCATCAG
ATGTTAATTTACAACAAACAAAtATCTTTCTTCTTTTTTCTTGAGGACCTagaGACcctcTTGCAACAACAAAAt
GTAGTcGAAGTAGTActaaAAGTGGTGGTACtcCTCACCATTTCTTTTTTCATTTCCTGAAAAGTGTAGTTAGAg
TGGgAAGAgGGGTCAAACGATGCTAATCTTAGTGACAGgaAAATGATGAATTTTCAATTGaaCTAAAAGCCcAAA
ACCTTTTTTCTcctatccgtaTTTGGTTGATTAGAGtGAaatGaacaaGAGCAAGAAACAGTCGTAAAaccagcc
atcagtttgattcaagatgacaacgaaaaagattcttttagcatcacTATGCATTGCCGAcactcctGTACCAAC
ACAGATTCGaCTtGTaCATGATCTACTTGACAACTACGATAAAAAGGCAAAGCCAATGTGGGATAACTCcAAgCC
AATTAATGTGTCGTTTTCGATGGATCTCTATCAaATTTTAGAGCTCAATGAaCCACAACAATATATTTTGCTCAA
TGCtTGGATTATtGAGGTgGGActgaAATTttAAAATTGAATTGGGAGAATatggcacgagcaggcacgacattt
ggagtgtgggttgtgagacagttttgatcaaattctgttttatcagccttggataatttcagtgtttttctgaaa
ttgttttgctatttcttgagagtattgcttaaatatctaaagttgaacgtcagttcattcaagctttcaaatatt
gatattttaaatgttgaactttacatttttttaaatttaattttcttcaatttgttgcAATTTcCAACCTTtTAA
ATACACTTAATGCtgtgtgagatatagcctttatttggcatttgatcaggattttTTGACCTTCcGAgtaACTAT
TTCgAAAATAGCTgGTGGgtgttttcaatgaaacaaattcgacttaatgtcatttggaaaaccctatggttagct
gatgtctacttcaaatctaaacaACGGATATGACGCtTGCTCgTTGAAAAACcAAcggAAAACGAGCGGAAATCC
TTAGGTGTTCACCACCTTTTTTTTCGGaTGATAGAGCAtTaCcCaAGCAtGTaGAAGTTTGCTGAGAAtTGTGCA
AAGgATAAGAAAAAATAcgtTGGAAgcacaagaagactAAAATCTttcacATTTTTTAGCGATGGTTCGACGAGT
TTCTCTATTGGAATCCGGACGATTAcGAaAATATAACGGAGCTTCGcTTGCCGTACGAcTCtATTTGGTTACCAG
ACACCACACTTTACAATTCaTTGGTaATGAAAGACGACGAtACAagGAGACtAttgaactcaaaacttacaactg
acacacatcgaagagctgcaTTGATCGAaCTTctaTATCCGACaATTTAtAAGTTCTCATGTCTaCTCGACCTcC
GGTTCTTCCCATTtGAtGTaCAAGTACGTTTTTTTTTCGTaCAATTAGgtTGTAAACgTTGACagCTAAACTCAT
TAgTTTTCGTTTTTGAGACCAAAATAAAGAATGTTCTTGTTTTTAGGTCTGCACAATGACcTTCTCaTCTTGGAC
aTATGACCAAAAAGGtATaGAtTATTTCCCATAcTCgGATAAAATTGGAACATCAAACTAcTTGGAAAACGAAGG
ATGGTACATTTTaCAaACaAAAAGTGAGCatttaaatgactaaatcattaatgaggttttcaaaatatttttctt
cgTTTTCAGTTAAAAGAcagGAAGTGAAATACGCATGTTGTCCaAATAACTACACGTTACTGCAGTTGACGcTaT
ATCTTCGgAGAAAACCGtTgTTCTATTTaGTCAATcTTATTATTCCAACATCgATtATtACtCTaATtGCTATTG
TaGGATTCTTCACGTaAGTTTTaacAAATTTCAAAAAATTaattatttAAAGAgccaTGTTTTCatatTTTCAGA
ACATCATCTGCATCaGGAATGCGTGAAGAGAAaGTATCaTTGGGTATCACGACcCTTCTtTCCATGTCCATTTTG
ATGTTAATGGTcTCcGATCAAATGCCTACAACATCTACATTTATTCCTCTaATTGGATGGTTcATTCTaGCAATG
ATAATAGTGATTTCcCTaGGAACcGTtGTCTCATCCGTaATAATTGCCATTCAAAAACGAGGAAGTCTTGGCGAG
CGAATGTCCAAAAGAGCACTaAAGTAcGTGaatgcTTCCTAagTTTTTTTTTgttgagtTGCTacataatgTTTT
GTTTTCTATTtTaAGATTTGCCAAAGTTCTTGCaTGGTTCACATGCACATCgtTGCCTCCACAcGTtGAGAAAGA
GCAcATGATGGAAGCTTTTGATGCgCCGACGCCaTTGGTAGAAGTTCGTCCAcTgCAACTTGCAAGTGTtAAAGA
ATCAGTTCGGAATAAATGGGTCAGTGGAGCACGACGAGCAACACAACGAGGtAACAGTGGTTTAGCTCTTATTTC
TGACAAGAGCACGGATCCACTtATTCATTTATCACCaACAGCGCATCAACcAGGTAGGCTTTAgtatcTTATATC
aTatcaTGTTTTAAATgtaTTcCAGATGAATCAATTTCaCCtTCAGCTCCACCgGTTCCATCAtCATCTCCTCTT
CCtCCtCCAttAACaCCTGGACCAGCTGATGAtGTtGTaTCgGTGGCgTCAGAATTATCGTCAAAATTCTTGACG
AGCAGAATGCGCCccAAGTCACAAAAGGAcAACACATTTGCcGCAATGCAGAGTaAGTcTtATTTtAAGAatcaa
tattgtactacggagccctaacggagcttgaaataaaaacggcactgagtgaaatgccaagttcaaatagcacgg
gtcttagggaataactcaaaatttTAATCCTCGTTCCgtccAAATGTTGCtaaACTTTagcgaagcCACTTTTTA
TtttgagagttcaaaaAACGTaaTTGTAGgggCTGGATTgAGTCGAAGCTCAaTGAGACAAGGTAGGTCgTGTTG
TaCggttaaaAACTTCTTCTATCACTATgtttgataacgggtttgatctcgtttcaatatttcagttaatttatt
taatcggcttttatttgaatattagctttgcatccaacttctgcgTTTTCaAtgTTTATAATTTTGtaatcaata
tatcgatagctgaaagtggaatattttgaaaagtgatacatttcattttgttaccaattaaatgacatttcatta
tgcaatgttaaactaataggaaactcaaaatcacatgttatctggaaattcgtattgtttacactactaacaatt
taactagataaaatcaataatatcaagtatcaagtaaattgtgttttactcatatggttgtaatttttttagtta
tgttaattttttattaattccaatcatagagagttgaacatagcaatgtgtaatctactagaacaatccaaccaa
ctagaacgggttcgacaaactggtacatagggtcaattattggctcaacatggttgagaaacactgatttctagg
aagcgttgggtcggcacagggtagcattttgtcaaacctccatcgttctagcaattctataaaaaacactagaaa
atagttctaaactattgaaactactggagaaatttttcacagtttaattttgaagcttgcggggttgtacaggtg
taacagaagtatcgtaagacatatctagtaatatatatatatatacatatgtgaccatatcattgttgattcttg
atacttcatatccacctaaagccgtttaactAAATTTCAGGcTCAATaAAAGCaAATCGaCAgcTaGCAGTTGCc
GAATTCGAATGGTTTGCcACAGTTGTgGAGAGAACGTGCTTTGTCATaTTTGTaGTTGCTTTCCTAATAATCACA
TTTGGAATCAACTTCATtGGTTTCATTCAcTGGCATCAaGCTGGTGTTGAATaTGGaGGATGAACATTCTCATTt
tcatcaTTTTCCAAAAACTCTTTCCTcTcTCGGTTGCTATTCTATCCCccACACAcATGACGCGGTTTCTGATAC
TCTTTTTTTTTTCGTTTTTCTTATTCCATTTTCTACTTTTTTTaGTTTTGCTTTTTAataaTCAATTCACATTTT
GCTTTCATATTgTTTtcTATTTCTGTCTGTActaTAGAttTAATCACTTTCTTCTgttcccaATTTTTcGCTTaA
GCTTCAATTTcaTTTCTCTTCCTTTTCCTatCttgacCTTCTTgaccaACAAtcctaATTCTTTACGAATAAATT
ATTTtTtTGGCTattacaacaTCtCATTATTTCCACttcTcCCAGTGTTATTTTCACTGTAcTCTATACCTTTAC
cctaataGTATTTcCATTTTCTTTgTTTTgTCCCTAACCAAATTTTACAGGTTAtATGccAGAATGACGTTAAAg
attcggaCAATCATTATTTTATtttgcGTGATTtCtGTCACAACAACGTCACAGTCACTCAATGCAACCTTAAAg
ACaTTCGGTgAGTaTTCCcAGAcTCTTTCAAtaatttacgaaacgTTCCAGACCCcCGACTgTTAAACTCGACGG
CTGATCGAGAtATAGCAATGaAaAATGTgCCaTTagTACGaTTAACGAGaCATtTATTGTCaCCAGAGAGATATG
ATGTgCGTGTCAGgCCgATTCTTGATCACAAGAAATCtCTgAAAGTGCAtATCAGtATATCACTCTATCAGATcA
TTGAAGTGGTGAGTTcaTCAACATTTTCAaTTAACAAAAAATTCAAAAgAAAAATTCTAAtATTTTATTTTATAT
TTCAGGATGAgCCgTCTCAAAATATTAAATTaAATGTTTGGATGATTCAAAAATGGAgAGATGAATATCTtGATT
GGAATCCcAATGAATaTGGAATGATCAAtTCAACAATtATTCCATTCCATCATCTCTGGATTCCgGACACTTATC
TTTAtAACAGTGTgAAAATGAGTCGAGATGAAACtGAAAGATATATGAAcATTCAAGcaACTTCAAAtTATTGGA
AAGGAGAAAAGGGAgCTGAACTTTCATTTCTCTATCCGGCAATtTACACgattactTGTCGATTaAATATTCGAT
TTTTCCCGTACGAtcGACAaAACTGCACACTGACAATaTCGAGcTGGACaAATTCAAAATCTGCtCTTGACTACT
ATGCAGACACcgAAGTgAGCATGCAATCATTCATTCCAAATGAAGAATGGCAGGTGAAGTCATTCaAAATTCATA
GACAtGAGGTaaaaaTTGTTcTCTTGtaTTTCTTaAGACCAcCAAATCCATCAATTTCAGTACAAATACGCgTGT
TGTGCCGAGCCATGGGTGATCCTTCAAGCCTCATTGGTTATTCAAcGAAAACCTCTTTACTACCTaGTAAAtCTt
ATTATTCCAACATCaATCATTACTtTaGTaGCTATCACTGGATTCTTCACTCCGGCtTCTACAGATGATGAcAGA
ACTGAAAAGATcAATTTGGGAATCACtACaCTTTTGGCAATGTCTATCTTGATGTTAATGGTGTCTGATCAAATG
CCAACtACTAGTGAATTCGTaCCACTtATTGCTTGGTTCTACCTCTCaATaATCATAATCATCTCaATTGGtACT
TTCCTTACAAGTGTTGTaCTTTCTGTACAAGGACGTCGgCAATATGGAAGaAATCCtCCACAATTCATTCGTTAT
ATCTTCTTCGTTCTCCTTCCtcaagtcctaTTgCTCAATGTaCCTCCACCACTTCAAACTCTTTGGGGaGAACTT
GATGATGATCCATTGAATGTTCGAAGAAGgAAAAAGTCACATTatTTAtCaAGAAATGTgaATAATGGATCAACT
AAAATGgcATCTCCAATGTAAgTTtcaTTTGAtaacTTTACAATcTTTGAAAAACaaAatAATTTCAGGTCCACA
TTGCGAGTGCCACagTCgGCTGGAAGTGTTTCTGAAAAGCGgCAATCCTTCCAAATGATTGATGTAACATCTCCA
AATTCTCCAAATACaGCCAGgTCaCGTGCACCATCTCTTGCTCCATCAACTGCCAAAGCTACaATGTGGGAGGGA
ACaATGTCaGCaCTTGCTGGTAAGctatAAATGATTGAggcaatgaccttaaagttAACTTTTCAGGAACAAATA
CTCAATTaCGAAGAACTTCCAATGTaTTCAATAAGGAAGTGGAcGAgATGCGAAGAAAACGGCAgTGCTCCCTcG
AaTGGGAGTTTTTGGCAACTGTATTGGATCGGTTAGTgTTcggcTAAAACAAATTTatatgcttacacttGAAAT
aattttcaaatcaaattttctcaaactgtccaaaaattaatagtaaagaaaAATTGTTTCAGGTTCCTgtTgATA
GTtTTCGTaGGAGCAGTcgTcATcGTgACAGCTGGcCTcATtCTCGTTGGcAGAATGGCaCAATACAGTTATGAC
CACCCgGATGACCgATTCTTTaATGTCTAAAACTtATCTCTTtTttCCtAATTTTaTCCgCATTTCCCCCAaTAT
TTTCaCATTTTTTTCTCTCtCACCCTCATTTCTGTTTTCCATTCAATAACTATGCGATGtgTACCGGTAcTTTGC
TTGCTATCTGGTTaTTTTTTTCAATTTTCCACAGAaTTCTATGGCTTTGATTcTtgTTCTcaATTTTTaaTgaAA
ATtTTTATTtcgacggaaaacaTTaTTGGTAttgaaaatgagAAATACTCGTTGaGAAATTTATTAATTAaATTA
TTAGAAAACAtaattatcAAATTGaTTtaaactatttaaaCTATTCATCGTCTAAtTTCAaTTTgGTTGGAGGcT
GAAGGAAtGCGAAACAtGCcACgTCATCCTTAAACCCGTCaCAATATTTcTGaGAcGCAACgACGAATGAAAATT
CGCAtGGtGAACAGATTACGTTaAAATGTCCgCCGAAtTCCTTGTTCGCAGCTTTTTGAATCTCTCTTTTgGAAC
TTTTTGCATCccTTCTGATGTTCTGAAAACTTccgtattgttagttcagcctgtgcaacaaaatatgaacacatt
gcagccgacatatcactgtttcatgagagtttgaacacatatcTCAACTCACcTCtTTTATCAATTTTCTCAATT
TTTCATCATTgCAgTTTTCTGTCTCCGCTCTcTTgtgcCTtaTCGCTCTtGTCATGGGAGAtGCGTGCAAAGAaG
AGTCAAtCTGCAAACAAACTTTTTTaactgctgccaaaacgtcaaaacgtgtGGTCCTGTGGTGTAGTGGTTATC
ACGTCTGCTTCACACGCAGAAGGTCGCCGGTTCGAACCCGGCCAGGACCTACTTTTTAAATTTTCcagCAAAATT
TTgatattttAATTACCTCtGTCCTcGTtGCAGCtTCTTCCAAcAAcTTTACTGGACTTGAATTtTCaATTTGAa
TGGatATTTCGTCTCTCATgAgCATCAACATTCCTTCCATTTCTTTCATCATATGAGAGATTCTATGTAACCCaT
TTACTcTgTCAGATTCgATTGGGGGACTGAacCGAATTTCAGaTTTTCTtGtTTTATTTGtgcTaATTTCCAttA
TTTCATTtTTCATcCTTTGaacttccttcgcgtTCAATGTTGGCAAAAGCTtCAtTGTTTTCTGAAAAtAAAaaa
taAACTTTgattttataacagaAAAACAACCTGAtgatcaAAAcTtGGAGTTGGcTGAAaagtcgatgttTCTTC
aTCGTCTtCATCAGCAAAcAATTTATGTTGAGAAATTTCAAAAAGTCGcTGaAGTGCgGAACATTTtACAGTTTC
aAccGAtgCATTGCATGGaGCcCGTGGAGCTGGACAACTGGgtCCAACAAgTGGACAtGGTTCTTCTaTACAtCC
ACAACAACACAAcTCAGTTCTgACaGGAGCAGTtagtactgatgGGATaaTGAAGAcaattaatagaagtaaaat
ctGAAACtttaATAATTatttcaatcggaaagcAAGAAAactcaccaTTGTTTTTTTTTgTTCTTTTTgggtatc
ttcagacagggataaaacaacaatgAATCCGTTTGACCCctttttcACTAATTATGTACACACATACAAGTATAT
CGCCGACCCACATTGAAACCAGTCTaACTTTCTttttttcTAAAGAtACGGGTAAAGTTAATTTATTTTCAtgAG
AAAAataatcaacatatccctaaactggttttttttgtttgtggatgaaaaataaagtattatgtaatttttgtt
taaaattattttgttcgtgtcgcgaccgggttgtattttttgaatcgcttcttcttctggatccattgactgaaa
aaaaagaaaattcaattaagattaaaattattttaatacaattggtacattagttttgctcccactaaaccaaat
ttccccgtactatgtatttccctgtaaacttaaattttattagaaaaatgatgatggctgaaattgttctaatca
gaaattaccagtTCTCatttttGTTCtaTTTTTTgTATcTCTTATCAaGATGTCCTTGCCacTCCAACCACtCCA
AATTCGCTAACCACAaagtATTTGACGGTCATcTTTCAaTTTGATTCCCAAaATTTccaacgtCCTACTtGATGC
GTTATTTaCTGTTAgTTTCcaTTTTTatcgctgatgTTATaGCTGAAAATGAAAATACAACtgttGAATTTaTgC
CaATTGGcAAGGATAtCAcggtggcaCCAGTTAACgctgaaacgaggAAGCCTGAAAtaataTCATccAgAGTTT
TCAAAGAAGAcGGTATAAAATACACTGAAATTATaCGAAAAACATCAcCCGGTGcTACACAAAcTGtTCATATcA
AAGtgGATGaGGTAAgTTCTgaactTAAATATTGAtaATTAatataagcaattttagaatccgTCGATAtTgCCA
GTaCCtGTTCCAAAtTTATCAGGATTaATGAAGcGAcTTCAAACAAcacttgcaAAGaAAtTGGAAGTTTCttct
cgtgaatatgatccaccaataagaaCAACAActcctGAATATTtTCCTCCggtaacggccACAATTGTaCGGGCA
GAAGGGTGAGTTTTTacCAAATTTtacaaacttaatacaaactttgcaaaactgtgatcgggatcagaatatttt
tatactacgttctagtattttgcaaagagaaaatagaaccagtcaacaattaggaaatgatttgacattcaaact
ttggccctgttaccacaataaatggaaagactttaaataaaggaaaatagtttttttacgtttttaagagcgaaa
cttaaaaatcaaattgacacagttttagaaatttttaaatatagttcttgagaaataatataatttttaaaaaaa
gttttggttttgcaaagttcttgaactgaaaaaaaggtttgtgattttatcaaataattttaatttaaaactcat
gtgttcaaagtaaactctgctttcagacattccactaggacgcaacgcacgtttgctataatatttacgtaaaca
agtagattgagccgaatttctacagcatatgaatgtatttagacaaattatgtcgaaagtgttctttccgtgaaa
aaaaacatgtaatcacgcttaaggaaaaaatgtaatcacgcttaaggaaaaaacacaaaacaaatgatttccgag
taaatccatatgtgcatggtatggaaatttggcccctttcagtcacctttgcttattttgcagagtttttaataa
aaagttgaaaactgtcagtttacattccacttttaataaagtaatgcagacaCAGTTattgagaAAtAATAGTAT
ATTTCAGACCAATtaATCAAcGgCCAAtaGGATTTGATCCactgccaaaTTACCagtaCCCACCTCCTCCTTATC
CACCAATGATGTATCCTCCGcCgtCgtATAGTCTGATGGGACGAGTTGGAAGTATGACTGATAACATTCTGGATA
ATGTcATGGAATTTGTGtTAGGAcgtcgacgacgctgaactaTTGCGAAGATTTGATTTATTTTTTGTTGcAAAA
TGAAGAAAATGACAaCTtGAAAtATAAAAAGTCATGAAAAgATAAAAcAAAAATACACGTAAAAcgttTTTAAGA
AAAGGCGGTGaAGGAAGGGAAAATaacttaagactgtgggtgttgggaATAAGTAGAAAACTtAAAATGTGAGTT
AGGAttTAATTGGGTTAGAAACAGGAAGtTGAAATTCTGATTCGAAGACACCGGCTCAGAACTGAATTGGGCATA
AAAAGTGaGTAAGCAAAGAAAcAAAATTagaAAAAAAAACAAATAAAGCAAAAAAGCAAAATCGATCGATCTtAA
GAtTGAGAAGGAAACGAATGaAAGGATCAGATCATCGGAAATGGGAGAgatttGAtAGAAAGGCATGAAGACAGA
TTGAGCAGATCATCTAGTTTGACATCCGACaAATTCAGAcAGTTTCAgCGGATATTCTTGTACtACTTTGAACTT
CTTcGTGTTGTAaACCTGAAAAattaaCATAAAAGatcgatttatatttcaacagcaaagttggaatcctattga
aaattgttactatagagtcgctatcgagagagttatgaatgctctaaaagctgatacgtatgctgaactcaagat
ataaattttcccgataatttcggcaattggcgttctctgaaaatttaaacttatcggaaattgacggggctgccg
attttcgtaaatataagtactgtttaattgagaatatcgccagcggaaaaaagtggccgactgccgaagatttta
atattgcggaaagAATACCTTTAACTTgTTTGTCTTGGTGTACATcAAAAGTGTTTCTCCAGCTCCgTTGTAcAC
GATTCCcAGtAGATCcCtTGGcAGATTtGGGAAaTACTTgCGTGTGTGgCCTGTGAATGTGGCtAAGTTCCAGTA
tGCgTCGTAGATGATGAAGTGTTCACCCTGAAATcATTTCAacCATGACaagaagGTTTTCTTaagattgATATc
AACTcACACTgAGAACaACTTGaTTTCCATCGGCCCATTCaAATGCTGACAAtGGATgGATTGTGATGTTtCGgG
GAAGaTCTTGTGGgGTaTTTTTcGCCAgcTGGAATCTACGATGTTTTCTGTTCCAACGGAATCTGTATGCAGTtC
GTCCaTCAAAGAGAATTGTGACTCCAGATCGAGAATTTGTCAATGCgGCgGTCACAGTTCTcGGTCCtCCAGcaa
AGAATTCACTGATCAAGTAaGACGCTTTTTGTGGaAGTCCgTCTTCAAACCAaATTTGaTAAACCCTTTCgCGAG
CAAAAACATAGGTTCTTCCATTGatTCCCTTTGTaATTGCATCgAAtttttcaGGACAgaCATCAAATGacAGaG
CCATTGCTTTCTTTGGaACTtcagCTTCTTTCTTTTTCGGAaCAACATGAGTGATTCTCCATGGAGCAAGGATCA
AGTCACGACGTTCACGTCCAAGGACGACtTTCTGcTGACGaTGcTGCTTGTTTTTTCTACGaCGGACtGTTGGAT
CTTGtCCACTGGCACGAATCATTTCCCATTTgGTcTGaCTATTCATaCGTGGCAaaGTTGGaACTTCTTCCGAAT
Ttacttcgtattgaggtgcgtcatctttgtcgtcgatcatctagaaaataagtaatataacattt

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Enhanced BLAT Score Card

 (Back to Top)


 Nematode EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: deg-3 locus
        

     Reference Genome: C.elegans
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              C.elegans
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            12290
            1
            12290 0 93 
  
           
            166
            7853
            9945 0 
                 0 /
                 73
               
  
           
            210
            2410
            7949 0 
                 0 /
                 117
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.brenneri
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            6383
            14
            12226 0  
  
           
            4901
            1634
            12226 4 
                 397 /
                 4504
               
  
           
            660
            119
            1176 0 
                 94 /
                 566
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.briggsae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5627
            584
            12154 2  
  
           
            1196
            4480
            7251 2 
                 50 /
                 1146
               
  
           
            263
            5739
            8769 1 
                 5 /
                 258
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.remanei
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5078
            591
            12240 3 75 
  
           
            251
            5622
            7939 0 
                 61 /
                 115
               
  
           
            101
            7843
            7956 0 
                 8 /
                 18
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              P.pacificus
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            153
            7852
            8076 0 82 
  
           
            85
            7850
            7939 0 
                 0 /
                 1
               
  
           
            84
            7850
            7939 0 
                 0 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
C.elegans deg-3 locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the C.elegans deg-3 locus reference sequence that are conserved in the C.brenneri and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

C.elegans deg-3 locus Genomic EvoPrint (Back to Top)

Black capital letters represent bases in the C.elegans deg-3 locus reference sequence that are conserved in the C.brenneri and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

deg-3 locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri or C.briggsae.Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Enhanced BLAT Score Card (Back to Top)

Nematode EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile

Black capital letters represent bases in the C.elegans deg-3 locus reference sequence that are conserved in the C.brenneri and C.briggsae orthologous DNAs.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
