Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
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Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  C.elegans egl-10 locus Genomic EvoPrint
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      Black capital letters represent bases in the C.elegans egl-10 locus reference sequence that are conserved in the C.brenneri, C.remanei  and C.briggsae orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 3' --> 5' direction)


 tgaaaagagttgtgaacgtagagatacccagacatatggacaatgaaaacaacggcgaactgaagcagagaagga
gcacaaaaatgggcgagtgtggtgaagaaaattgacaagtctatgataaggaggagctataagtgagagagagac
tagaaatggaagactacaggtgtttgagatgaaaagagagttggagagattttagttcaagtcagaaattttaat
gactattatcgaaaaaccgccttgactatattttgagtgtttttagagcatgaatctaattaaagtgggaaacct
aaattctagggagctgtcaaaatgtaactaaaaacaattttttgtaaaattcataagccgccgaatgtttcaata
ctacataaaaaattcaattgtagcgggaaattattgcaacaattacgaacttaggcaaataaaaatataaccgga
ttgtaataattatgttctttcggaaagtgccttgatttattaaaatcatttcatcagtcaatttgggctctaagg
ccatacaatattgtcaccacgttaactacactcaaaatgcagactacctgacgtcaaaaagaggttatagaacgg
ttgttgaaatatggaaagttgaacaaaaacaaaatgatgtaaaagctactttgaaaagtaaaataattgtatacc
aaattatcatcaagctaagactatttttctgtaactgtaaaaccgcgataagtaagaactgacatgttgtcgaca
ctctattacgccataagttaaaagagaaaaacaattcggtgataactcgaaaatcgtctaaaacatcaaactttg
aatacgatgccgagacttgaatgtcacatcacaaaagtcaaaattcaaaagaaatttcaaagaatctcataaaaa
atgatggcggacgattGATGAAcCCaAACGAAATTTTcaaaaaagaaaaaaaacgaaAAgaaAtAAAcACACATG
TGGggcgagAAGacGACAAAGAACATCTGcccccgggaggatccgtaGGTCCAATCAGCTTTGtAACAAcGTTtg
TgtgtgTTgTTTGTtCaTttcaaTTGTtctctgtttggggaccCCGCCACGTTTGTTCTTCAATCGGTTAaCAAC
TTATggctgatctatCGAACaGAAAtggcggacggcggcggcgggaaaAAAGTTgagaGaGGAGACCCaGTGGAA
CCATCGTTTGTTTGCCTTTCGGTCATCGATACATGgAGCGTTTCTTTCAGAAAaTGTTtGGaAAAAgaAtATAta
ttgtcggctttttcagaaggaaaacagtcgatatttgattttccgattccaacgggaaaacatctaacataagct
tgaaattaaaggaaaaggatcggatgttgtagcaaaatgaaggcaacgtcatgcaattcaaataatgaactataa
gatgactcataagagtgcctaggaccttgaaaaattatcccacaacttatctcaaaaatgcaaaagaaaagattt
ctaggaataaatttccgtatcacatgtgtttcgaaaaaggaaactcgaaaaaaagtagaaaagacatcaagaatt
atagccgttgcagcacagtttgtttgattttttgagtcagcattttagtattttatcgttacgttatagtaatcc
taaatttgttgaactaactttcaaggcagctatgagatttgagaagatctttgaaaaaaaaatcatatctcaatt
atttctacagactgaaattgtaaatttcaaaaaatctgaatcgacacgtcgtggctctaaagagagtaaatgagc
tctaaacagtactaaagaaagagtttggcaaaactaaagtaatcccagaattttcaagaattgattttgaaaatg
ttttgtagaaaagttaggccaaaaaattcaaatcaacaAAAAcTGACCaAAAGATCATTACGTAATtGTCAATAg
tgAAAgatTGATAGAagaaagagcaaaaagaacaaaatagataagcacaaggaagctgaaataattgtgatttga
actgattttctagaaactgaaaaactttgaattctactgagagatataaacttaaaagtgtAGGTTGTAAAACAA
aAAGGCGCCAATTTGTcgttggtgAAtAAGAAacatggGGTGCgAGGAAAAgATGGTCaTGTACCTGAAAAgAGA
gGGGTCGCCGTGTCTgTGAATtggatgaagagagaTAGAGAGAaccAGAGAgtgAAAgagcgAAAgGCCaGTGTT
TTGACATGaactgAaGAGTTGGCGgCCCCtAGAcAGACaactagtgtaccacTGGGAATAgtgtttagagtacat
agacgcagatagtgAAAGaaAttaTACCATtgtgaaGGGAtTCCGgCGGGaAAAAGGCGAagAgGAagAggAAAg
gacGGAATAACATCTcTCaatTTCTgaagatgagagaaacAGAaaAAGAtATGAAAAGAGAGtCCAGAGAGAaTA
GTGtgcTCtcCtCTGgGCTctgAtgttggCTgGGGGAGCTCgGAGTGtCCCCGAAAATCAATGGGTCCTTGCGTG
GTCTccctcgGCTgCTGCCCGGCTCCTCTCGCTCgTTCTagtTCTTtTGCAGagctCCCCtcccatcgaAGCTCC
ACCCGcCTTCaACGCTAGtCGCCGCAGGCTGTTTTTGGCGCTTTAATCAATTCCcCtGTCgTTGTGTCTAcGTCt
tttatgttcttcTTttAAAataCTGCTCCcaaagcgatatgatttagagtctcatcccaaaatgttcaaaactaa
atgattgaaaatctcttaaattttcttgaaaactcttcaataacgcaaAgCTCATTTGccTCGCtCCATTGGgAT
CgCATtcaaatgacgattcgcTTTCaAAAAAAAGAGACGCAGAGtgGGtaccctcCaTCtTCTCcttttcTTcTC
AAAAGTCTTTTGATAGATTTgTTTCCCTcagTCTTctttagtattctcaaccttcttttcgaatCTTTTTcTCTA
ATTTTTGTACtACTgttaccagcataccATGTTTACATAcactcgcaatcctaaaagccgagatcttgccaagag
atgagtgcatcgtagagcatcacatttttcgattgttttcaatgatttttcaaccactttaaataaatttgtaac
attatggtatattttgaaaactgtgagttttaaatattgtagttttctagaatagaaacgccatcgaatatataa
tatgttgcttccgtagtctcgacagtattttttctaatagtactacacacaatttctcaagtttggcagcttata
tctcagctgttgtttgttttattaaaaaattgttaactgaaaaatatgttttatttcattttcaattgtttttgt
atttgcatttttattaaatgagccacaattaaaactttcagagtgatgtagtggggtgcaatattaatagaagag
atacagtatctatttttcatcaaacctgaaaaacgcagttttctatttccttaatcaacattaaaactagagtaa
gataaagcatgaaaattttttaaaagaactaggtataccatgagatattccccgatccgttttttttgacttcac
caacgaaaatgagttgtaattgtaaaatcttgtaatataaacgtacttttcatacatcatcaaactaaatattcc
atgtcatagatttgtttataaacctagttcgtcatctagcaaatccaggaataaatccacaaataaatcaaagaa
cgaaagcttctttttaatctcattatcttttttctttacatttctattcttttctgtctagaaatacgaatccac
tttaattaaacttttaccaacgactacggtatcgctattttatcactttttgttcgaatcaaataaatagtttgc
catgtcacaagcctctcatttcaagttttcatgcacatttctcggtatgcttctttggttttgaaaatcatcttt
ctttaaaatataaaaatccttataattttgaacacttaaatcagtttgtgcaccaaaaattaaagttcagtgaag
tctaggaaatttctttttttctgatcggtttttttcgttgaaactccctcctttgtctttatgatatagttatag
aatttcagatgagttcttttcaatattttctagttttccttttgatcttacaatgcactggaattatattttata
ttatgaaacagatctttaaaaaatacttcttagtgagaaaaatacaattttctcgatgttctaaacatttgaggt
ttgaagaacttagaagttagactttaaaaaatatattttacgattttaactgcatacatttcttgattattcgtt
tcctaacaaagatattcacataatgcaatgcgaattatcagtatgcagtcctgtaATTAGtGgaaATTCAtCCgc
ttatcatctttcttATACCattcatcagcttatTTCcaGCTCTTTTTCAATTCaTttTACCCTTTTCTCTtTctc
tcTTTTTCAATGTGtaTATGTATTCgATTCGtGTCTCGAATTTCATCCTCTTTCTacTTCTTctcTTTtTCTtTC
TtTcTTTTtgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct
ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctctctaTTTTTTCatTGGCACACTCGC
aCTCTcTCGACTCTCACTCAcaCGCTCACTCACCatCACGCtCACTCTGgGCCCTATACGTgATGTGCgCGTCTC
CTTTTCCTTGTCgTTTtCTTTTCcTTaTTcTttttCTTaTactgcctTCTCATCTTAATATTTTcatgctctttt
tgctcttttgtacgacatacaattcatatatgctcaactcatctttgcagacttttgtggctcaacacctcgttt
cttttgcacccgaaccgcaCCCACGGTAAcACGGATTCtGCGAGGAATGAAGGAGTAGAAGAtaacgggacattc
ccttGTGtCAAAGTGAGAGCCaACGAcgacgatcctAAGAAGtataaacttggaagagtattcacaaaagtcttg
aagactaaagcttcacaatggctctaccaagattgaggttagattcacttcatcttcaaaaaaaacagcaaaata
tattatgtttttaattctatatatttcaaacaaaaaacgtttaaagattagtacccaaacaaattatttattcta
aaaatacaaagaggttttttttttttgaaaagttgtaataaaaaagtttttgtactttcaaaatttcctgtaaac
taatgagtgaaatgatctcgagcaatagtttttttaaagtttatttgactggaacggttttgggtcttgtgaaca
agcaactcattacttcatattcatacatctccattcaaatttaatactattcagtgttaaaaaattaatctcgat
tatcaccatgttcaactatcgataggcatttcaatgagatgtgaaaagttctatagaacaatgtagagtctcatg
atttttttaatatgcaaaataaaaacatttggaaaaattgaaacttccgggttactatatgcaaactgttatcat
tgtagtaatactgctgcgtgctttgaatagtaagtttttttgctaatttttgaaaaatatattattttagaaaac
ttttcaaacacttttaaatttttttatttactgttaaaaagtagcgatcactcagtttttttctttaaattgttt
taatgctctaattaggcttcaaattcaaattttcacactgtaggggctggaatatgcgacgttgcttttttcaaa
aagtctgaaatatttaataaatttgacaatccacctaaattgacttaaattatttgattgatggaaaagtattta
ttcttaaattttttaacagcaaaaaataaattttcctgcggccattaatttgttggcagtcacatccagctttcc
aaaaaaaacaacgaggaaaataatgaaaatctgcactaaaaagtatgtttaaaaatgtggattacgaacttatca
ttgaaatttctcgagctatgcatatattttggctgccttgattaaaagtactgtaggtcccctatttacttttga
agcttattggttctagttgaggtaattttgtcattaaaaaactattgcgtagttcatttccattcattcgtgaat
attctttatttatctattcgttttctatgtatatgaaaatcaccgaaaatttaggcaattcgttctttttttttt
gtttctttcaatgttgcaatgtcagttgctaggtcgtcgagagcattttttgtgcggatgctactcagccaattt
gtcgttcatccgtcgcccggcactagtactaaacacaaattctcatttacatacaaacgtttggagaatacgatt
tagtggagaaaagctcgtagtcttagcctttttctacgcccaagaaaatttttgtaggctactgcccaatgcttt
aatcttgctttctttttgtggtttacgaaatacaaaattctgtaaatcctgtaaagggcgggtgagaagaggcca
agacattgtgtcttctgatttattttcattcattttctaagctttgtcgtagtgtgttcaagaaaagatgctact
ttccaactggtaagtcagtgatttttcttaaatattcacatggacatagtgttgcgtcagaaccaatttgtgatg
attgacagaaccaagagctacaacttccgtgaaaaatagAAAAAAAACATGAAAActctgaaaatgtagagcgtt
tttccatcttgccaaaAGTCCCAGAAGTcctactaAaAATCACGTGAAGTGGagatggggtgcctTcaTGGgttc
aaAcaAAAAAGAACAGAGAAAAcGAGAAGgGCTGTAATATTTTATGTTCCtcaTCCttCTctTTCTTcgtTTTTT
CtTCTGTTTTCTTGTTGTTGTTGTCatccgtgtGTATATTCTTTCCGCCaAGCTtgcccgCaGCtTTTTAgAGGT
TTTTTTTcgGGAaAgCTttttctctctgTTCTTtgtgttTTTTCcTtTCACTacataaccaatgcaGATGTTTTG
aTGTTCTTCGagAAggAAAacttcagataggaatagggatagggaaaaagatatgcattgcgaaatgtaagtgcg
ccatagaaaatagttagatatttttgatggttggttggaaagaattcaatttgataacattgatccttatttttc
atttatcatgttccaccttttaaaaattgttacttatagcttcacacttactaaaactacagcttaaaagcttca
atcaaatccatgttgattatttaccagtcaaactgatttttttttcattttttaaataagctgccaaaatggagc
atttggaaacaactatacatatatgaaatttaaaatgtgcatatgactatattcctggacgatatcaattttttt
tcatgaaatcatctgaaaacagctgtcaaattcaaatttagtgaagtggatttttttgaaaaaaatatatgaaaa
atatttgcaaatgttatgacgttttgagtagtgacatcacttcccaagtgcatctcaaaagtaattgatgcatat
aaaacacgaaacattgtattattactgaaacttgagatgtatcataactagggaaaaccttacattgattccaaa
taatacgtgacgggtttacAGGGTAAatGCAAGCAACGAGGAgCGtCTTGTaCATCCaAaccacATGGTgTAcCG
tAAGATGGAGATGCTtGTcAAtCAaATGCTtGAtGCaGAAGCtGGtGTtCCaATcAAGACtGTcAAGAGtTTTCT
gTCaAAAGTtCCATCtGTaTTcACcGGaCAAGATcTgattggaTGGATcATGAAAAatCTTGAgATGACtGATCT
TTGTaAGTtgccgcaaatattttgtatcgagaatcagaaaaatcaatttcAGCgGATGCcCTtCATCTgGCtCAT
CTGATcgcgtcacacgGTTAtCTTTTcCAAATtGAcGATCAtGTGTTaACGGTtaAAAACGAtGGAACaTTcTAT
CGGTTTCAAACtCCaTACTTtTGGCCgTCaAAtTGTTGGGAtCCgGAaAAtACtGAtTACGGTgattcttgattt
tttgaagctgaaattagtatcatgttttgttcatgaaaagtatttgctattattttcaggatctttgtgagatgt
tgggcagttttagacaattctcatgtgattgaaaactcagagtttgaaaactagtttaatagaatccatttagct
acaattttaaagtttttcaataacataaaatcaaaccatgctgaaaactgctgagaaagctgagaaagcaaaatt
ttgcaaaagcaaatatTTTCAGCGGTgTACCTgTGcAAgCGgACaATGCAgAACAAaGCgCAttTGGAaCTgGAg
GACTTtGAAGCgGAgAAcCTGGCAAAgCTgCAGAAGATGTTCTCgcgcaagTGGGAaTTtGTgTTCATGCAAGCc
GAaGCTCAaTACAAGTTTGTgaTaTTcTctTcTCTcTTTgctGCattccGcGTGTatatatTTTTTctcgttcgt
cgtcttttcgGgCGCTCGtgCTAGTTTGCAGTGCAtAGCTTCTCAGTTTCCACCAACTcATCCACTTACATTGTG
TGAATgCGTGAATGACGTCAAGAACGGGgAAAAgggaAAGAAaAcgagcAAGGCAgtgggctcGTATCAaTTTTt
gacAAAAAAgggtttgagagaagaaaagttcattttccaaaaacaatgaaatataaattagtgggatttaatcct
ctaaaaaattgtatgttttctttttcaatatgtgaatcggaaccagcagaaagtccggtaaagatgtcaaaattc
atgttttatcaaatttactcgttttttgaacattcaagtcacaactgatagtgattggggatatcaaccaaacct
caatcaacaacctatttccataacctttctgaacacatcatttcggggaaaaaactaaaattttatgtgggtgta
gtttctgatgacgttatctctttcttccgctattaccgattttcacccaaataaagggcctgctgttttattttt
catctttcgagtttttttcgagaagaagagcaaagcacttttgttgagaatcggtcggacggtggtgaGAAgAGA
AGAAGATGgATGTGaatgtgatggaatggagGCGCCGAGCCAATCCAAGTAAATTGgAAAAAtcgacggcgccgG
GAgTCGGAAAtAATGATgatGAAGACGTaaaagaaggggtgtagatagatcgagagtaaggAaGAAtaagaaaaa
aacagaagaagaagaaggcgtgctttcccctttGGAtTAGATGcAAAaaatcggcggGAGCTCATTCcattcctc
cgtacttttactacaacttcctccacattcctaaaattcttctaatcttctgaccatcagtattgtgttttgctc
ctgcccaaagatgggtggttttcgaagacttcgtcatttattttttaaaaagactccagatgaaaaagaaaataa
aagatcgtcaactgacgaacaaaagtgggttcacaataatcatattttgaattgaaggaaacaaatctcaaacat
tatacttattttaattgaaaaaaaaagaaccactgtcttgcaaaacttctttctttatctattcttgatcttgca
agttctagCCCaTACTAATTaGTGaGcgtTGCGCGTGtTTTatcaGgCATTCTACGCAacAATaAATCcAGGACa
CTCAGgGTcGACAAgAAgCGAGATCGcCAgGAgCGcCAaATtCTtGACAGTCAgGAaCGtGCtTTCTGGGATGTt
CAtcGtCCaGTgCCaGGaTGTGTaAACACtACaGAaGTcGActtccggaagctttcacggTCTGGaaggcCCAAg
TACAGTAGtGGaggacacgcagcattggccgcttcaacgtcgggtatcggttgcactcagtattcacaaagtgtg
gcagcagctcatgcgAGTCTTCCATCAACATCaAATGGgAGTGCaacatctccaagaaagaacgatcaggaGCCa
TCAACATCaAGTGggggTGAaTCTCCATCAACatcgTCTGCtgctgctggaactgccacaacatctgcaCCATCA
ACatcaacgcctccggtgacaactattactgcgtaagttaaaattttcaattttcagatataaattctttatttg
aaaattttcagaACGAtaAATGCaGGaTCaTTcCGaAATAAcTAtTACaCaaGACCtGGaTTaCGGcGgTGtACa
CAAGTaCAgGAtACGtTaAAACTgGAAATTGTgCAatTGAATAGtcGaTTATCAAAaAaTGTattacgtacatct
AAAGTTGTAGAAAAGTAagctttaatagattatttttaaaagatcaatattgtTTTCAGtTATtTGgCatatTAc
GAACAACGtCGaGTaTTTGAtCCaCTGtTAACgccTCCtggatctcaggctGATCCttTtCAATCaCAgCCtAAt
CCATGGATtAAcGATACtgttgatttttggcaacatgataaaatgtgagtttctagagtttttttgccgaatgtc
acgtttcaactaaaaatTTTCAGtACGGGaGACATcCAAACccgcCGaCTcAAGCTtTGGGAgGAtAGtTTtGAA
GAattaCTtGCTGAtTCaTTaGGTCGaGAaACTCTTCAaaAaTTCCTtGACAAaGAaTATTCtGGAGAaAAcTTG
CGgtTTTGGTGGGAggtacaaAAgcTgCGAAAgTGcAGtTCaaGaATGGTtCCaGTtATGGTaACaGAGATtTAC
AAcgagtTtATCGatACAAATGCgGCaACgTCgCCgGTCAATGTgGATTGTAAAGTGATGGAAGTgACcGAagac
aatttaaagAAtccAAATCGgTGGAGttTtGATGAaGCaGCgGTGAGtattacattatagtgagcagttcgggga
tgggaaaatatcattttcggcaaatctacaattgaacttttttgacatggcgttccaatatttttcattgaaatg
tggagcaagagtatagaaaaatatattcgaattattagaaaaaatagtttgattaaaaaggtgttccaaacttgg
atgaaaaaattgtataattgccaaaaataagtgcccactactgtttctcatatagatttggcagcatattgagtg
ccttgtaaactttaacagatatgtatgtcagaaaacccttgaagaaatattgtgaaccactaaattataaaaact
atatgattttactttcaggatcatatctactgccttatgaagaacgatagttatcaacgctttcttcgttcagaa
atttataaggatttagtattacaATCaAGAAAGAAGGTAAGTCtcaattgctcgttttccattTTTGCATCTtga
ttcCTCTGAAaCCCCTTTCAGTTCCGGTTTtaGCTTAGTTTGATTCccaccttttttcccttcCCTTcCCCcaTG
AATGtTTtcttttCACACTaTGAgATATGTGTTTcatctattTTTcCGATTGAAAGCTTACtGAATGCTCGCTGA
Aaaacttcaaataacaaactcagaccaaataacatcaaagttcgagcaatttattttttttataccaaaagcatg
ttcaattgaatatcccattcagtcactaacactctgatttcattcagttaattatatttttacaagtaggatcaa
tacacctcaatcccaatcaatctaacacatgttcatcccgatctcactaaaatttcaacatttaatatttccaat
ccaaaacctaaaacgttaaacatttgatcttgtttcaaattcaaaattttcTAACaTTGATTCAGACaACGTTTA
CCTCacTGATtGCTCGtaAaGCaTCgCGacgcATCGGaTCGACAATgTCGCGGAgctCGCAGAgcAACAAAACTC
TGCATGCGAGcGCcTCTCTcGGCTCGGCGCTTTCCGGTCACGGCTCtTCCACATCaTCaATGcTCACCgCcGGAG
GAGCgGCGTCGAGCCAGAATCTgCTGCTCGCcCCgCCACAACATCATCTGTATGTGCCctcactctctctctcat
acactcacactcaacactcactcccaatgaaatgcagaatgaatgtagtcttttgacagaaattgtggagaatag
ggatgaggaaaaatgaggaaagatataagtttaaaacttgaaaaacgttccaaaaattgaaaccaatattcattt
ctttcaatatctctgatctttccaacaagtccggttcattccacagactttgcaaaatctctgtaaaattttcct
actttttcttgacgcaactatgttcattcatgtcatttgacttctcctctcattgtccaaaatcttGTCACTGGT
tACATTGGTCACGTCCACAgcgtcacacatcttgcaatAATCACtaaTCACTtttTGTCcTGTCactgtccagtc
tgctctTTCaCTGaGTTTCacTgaaaTTTTcgAAAGCATGTcaCTTgaTTTTttcggtttgctgctcacattgca
cggccctttgaatgcacctgttgactttggtttctggaaaatactgaaaatgtgttttgtgtgaatttgtaaatc
tgaaattgcaatgattttggatgatttcatctttgagactgtttgctctgctattgtcttctctgaactactcga
aaatttgaattgaaaaaaaaagaaatattttgataagttctacaaaacatgtcataggagtcaaaatagttttta
taaaaatgggcggagttaatcggtgattgatcttgcagttttcagcttggaggaaattcaaaaaattcgtcagtt
ttaagactaccttattttatctattattgcttccgactgcctactttgaacaatttttaatagaataaacggcca
ctgagatataagctgtcaaagttgaacaaggggcattaataatagaagaaatatttctattatttcgagacttaa
tctcacgctatttcgaagtattgtccaagtgcaaacttggccagcttggagaaaatagaactacagtagttctac
tactatttcagtttttcatataaaaagttttatgttttatattcaatcaaataatcgagaagttcaatgtttgcc
tcttaattccttttttctgccccatccctttccaggctttcatttcctttttcctcatatcaatgaaatatttta
aaaTTTCAGGTgAAtCAAAAAGGtCCAAAagGTTTCTTaACtGGaAAtcTtCCATCaTTcTCcAATGCaGTaCGt
ACaAATCTTCATGTtGGaCAACAAGGATCaTCgTGtTCaCCAACaTCaAATGCTCCtccttaaagatttcaaaat
tactagttctttgtTTcTCTATCGGTtGCTTcTAGATGGGTttttgAtTAGCTTCCGccaccatttttcgtaaat
cacttactctagcattatGTGTTCGTTaTAGAACAcactccaccagtttttgtttcgtttgaaattatacacgat
ttcagtgcaaactttggtatccggttgactgaaaatcacatattttgtgagctattcttaaaatttatcctacga
tcgcaattttctgagacgagtatttcaagacgcactggtatatttggatgggtctcgccacgagaaaattttatg
gctgtacttgtcagaaattatggacaaaatcaagaaaatttgacaaaaactgataaattttcatttctgaataaa
acgaaaagcaatcatagaaatattcaaccataaaatttttcgcgacaagacccatctgaagaaattcatgcgact
ttaatccggagtttcaggaaattaggaaattacgttattcttaaaatataaccacacacttacaggttcacaaag
ctttaaactaggccaattacccaaaaaataatttagaaattctataagaatagctttcaaaattattgatttctc
ataaagctcaaaatgtgaacaattttgaaaccacgtggatatccaagaccgcacaaaaatcttctcaaaactgtt
gttgctttaattagtgtgcttttttcgattttcgtgaaaatggtggattttgccaaatgtgctaaattcctcata
tagtttcccatttgccctttgtattttgttttatttctctcaatcattttccggttttgtctttaaaaataattt
cctctttatCCTCaaaaaaaattaatttgctttttctcaattgcatctagttttgcactcatgcatttccgaaca
ttccgtctttactttgttttgaaaaaaaaaccaaaagaatcgttttctttactctcattcgaaatcaccAAAAAT
CTAGATCcCAATTtcaaaattactcgttttgactgcaactttccatagaatcgcttatgtttcttcccctgaacg
cATTTAtATTgcaTtAATATTattgacaacactttaatttggtaaatttggtttcttgtcctcatgttttttgag
tcttcgcccgtttctcatgtaaatctcagtcgacgctctcatgcaacatTTGATGACCTCtTTTATGAataaatc
gtttgaaaatcaaaacaaacacgggttggaatagattacataaaaacaaatatttaaaataaagccttgaataga
aagtggctgtgatggatgactatttggaaggaggaagtgtaatttctggattccgtttggcacgttctCgcTCtC
gccgttcttgggtttctatgtaccgaagctcatcgcgaacctgaaaataaaatgtgatttttagaaaaaaaaaat
ctgatacgtactcgttgggcgacttcagcttctttcttgcgatcttcttcttctttcgccaattcttgtcttgtt
ttctttaacgcttgactcatctgcatttttactcgtctcgcttgctccgttttccactgttgttcaccatcatct
tcatcactgctacgatcatttgatgtctgtccacgtttctctttaatcaatttctttgtcaattttacgcgccgt
tttcggttttcaatttcagctttttccttttctgagtccgacatactcgacctggaaaatgatgattatgcccaa
catttttctattttcaagttttaccttatttccaacatttttacatgatcggaatcactgtcttcagcgctactc
tctctgggctcgtcaactttcactggaggtttctcttctgaaacaacacaagagacaacatcatcttgtcgtacc
acgttctttgatgttcttcgtttctcatttctttcatctctggatctgtctctagatctgtctcgtctccgatct
ttcgaacgctggcgtcttctactcgtgcttcgacttctgtgccttctacgatccctggaccgactacgtctacgc
tctcgacgatctggagaatatctacgacgatcacgcGAACGACTgcgtcgttgccggtctctgaataataaatat
tgctttttcagtttcaaaaataaataaatatctaacctagaacggcttcttcgtctcgaattacttcttcttggt
cggcgtcgatctcttgttcgtgaccttgatctacttcttcttcttggcggggatctacttcttgaacggcttctc
gatctgctccacgatcttctattcattcctccattacccccaccaacttttagatttccccagtcaacagCATCg
TCATCTTTtcttcgattcTGgGAcAgtTTcaaaattTTTCGATAtTCTTCagacgGgAgtTCtGGaCCgACaatt
tcTTTttTAatTTCATCaTCACTgTCtcgATCggcaccaCCtCCAAAtgttgtaatgaattcaggttttgcaCGT
CGatcatcaTCATtATCgCTtCCtTCCATaTCTTcaATCAatTCATCgacTTTcGATTTtTTCTGaCTtTgaTTG
ATGAATCCCAgaAGAGTaGCaGTtGCtCCaTTTTcAGAAACAACCATTCCtcTttTTCCaacaatgGCTTGaCGT
TGtTGACGAAGaAGCATTCttTCaTGcTTTGAtTCtCGaCCCTgaataaaataatttaaaaattggaagtaatcc
aacgatatatttcttctgattttcgtcaatgcttgataacgaacaataaattaattttggtagaaattttttgag
gcaatAATTACTTATGGaaatatggttTACGGACAGAGAGCgcaGCcTTTTGaCGATCaATtTGTTTcAaTTGtG
CggcatccCGcAACGCTTGtTGATCggcttTtAGAAGaGCaCAGAAtaaccctcgttttacaccaAACTCtTCtC
CACTTTTgttaacagtcctctgcgtttcaggattgagtattgaagtatcaagatcgacatctgttaatttttaaa
attgttataatctatccataatagaaaaatacccaagtcttgcatatcatccatttcctcttcttcgctgtcgcc
atcagagttgtacttttcatcttttccgcctttcacaacttccgagtcatcgtaactaaatccaatcgtcgactt
cttttccgcggactttttctttttttcagtttccacttttctattgttatctttttctgcacaccagaactctcg
atccgcaatttttttgagataatgtttttccgaaacttttttgtaatcgtttataatgagcacccggtaacgctc
gaaatccgtcacaatttgttctttttcgtcaacgatttcggtcttcgtttttggaattattTCATCgatatctac
taaATCCATTtTaGAtAgATGcGATCGAgcgtcaaatCGATcaataGTAATagtgGaATCtCCTTGCCAcGGcct
taagatgttggcgTCTTCaGCaGCcCGAGCaAttcCCAaaTCaGCgTGAAtCTgGGCTTTTCgtCCaTGAATcTG
CATGAATTGgTCtGGATctTTTCgCTGAAAAatgtttaactaggatttttaaagaaaattaataacaaaactcac
gACATTtTCAAAaTAtCtcCGTTTtCgttctgcccttTTtGAtTGATCGATCATtgTgGtgCGCAGaATcTTCTC
CTGCCGtCGcGCTTCgTGCCACATTTTcTGaatcgaaatatttcttgaaaattattgttttaagtttaaaattaa
aaaaaaatctgaatacgggagatatatttatatttatttagctatttagataaaagaaaataaaataatcgctcc
tgtgtagaattacgctaaacaaagcgatgcaccgtaataacggagttttgtagttggcaattagcgggtgttcaa
atatgaattttccttgctcgaggaccaactgtaccgggcctttctttttttccgttttttgtaacatatcgtaga
atataactttttttaaaaactcttaacaaagttatttcatgtactgaaaaaaaattaatgaatatttatttcaac
ttgagggtcgtgatctattgatcaaaccctggtcttacttcatttccacccactgtgtaaactggaacataatat
gaaatgtaaacttgaagcttctttttttttcaaaattttgttaacttccccttttattctccaaacgaagcagaa
aaatgaaaaaaagaggaagaagaacaataccatctcgaccattcgacctttgcatactttcctgtttacgtcttt
tcacactattgaacattgttctgggtcttcccattgttagtaaaagaccttcttctagtaa
  
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egl-10 locus Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri, C.remanei or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

tgaaaagagttgtgaacgtagagatacccagacatatggacaatgaaaacaacggcgaactgaagcagagaagga
gcacaaaaatgggcgagtgtggtgaagaaaattgacaagtctatgataaggaggagctataagtgagagagagac
tagaaatggaagactacaggtgtttgagatgaaaagagagttggagagattttagttcaagtcagaaattttaat
gactattatcgaaaaaccgccttgactatattttgagtgtttttagagcatgaatctaattaaagtgggaaacct
aaattctagggagctgtcaaaatgtaactaaaaacaattttttgtaaaattcataagccgccgaatgtttcaata
ctacataaaaaattcaattgtagcgggaaattattgcaacaattacgaacttaggcaaataaaaatataaccgga
ttgtaataattatgttctttcggaaagtgccttgatttattaaaatcatttcatcagtcaatttgggctctaagg
ccatacaatattgtcaccacgttaactacactcaaaatgcagactacctgacgtcaaaaagaggttatagaacgg
ttgttgaaatatggaaagttgaacaaaaacaaaatgatgtaaaagctactttgaaaagtaaaataattgtatacc
aaattatcatcaagctaagactatttttctgtaactgtaaaaccgcgataagtaagaactgacatgttgtcgaca
ctctattacgccataagttaaaagagaaaaacaattcggtgataactcgaaaatcgtctaaaacatcaaactttg
aatacgatgccgagacttgaatgtcacatcacaaaagtcaaaattcAAAAgAAAttTCaAAgaAtCTCATAAAAA
ATGATGGCggAcgATtGATGAACCCAAACGAAATTTTcAAAAAaGAAaAAAAACGAAAAgAAAtAAAcACACATG
TGGggcgaGAAGaCGACAAAGAACATCTGCccccgggaggatccgtAGGTCCAATCAGCTTTGTAACAAcGTTTg
TGTgTGTTGTTTGTTCaTTtCAATTGTTCTCTgtttggggaccCCGCCACGTTTGTTCTTCAATCGGTTAaCAAC
TTATGGcTGATCTATCGAACaGAAAtGGCgGacggcggcGGCGgGAAAAAAGTTgAGAGaGGAGACCCaGTGGAA
CCATCGTTTGTTTGCCTTTCGGTCATCGATACATGGAGCGTTTCTTTCAGAAAATGTTTGGaAAAAgAATATAta
ttgtcggctttttcagaaggaaaacagtcgatatttgattttccgattccaacgggaaaacatctaacataagct
tgaaattaaaggaaaaggatcggatgttgtagcaaaatgaaggcaacgtcatgcaattcaaataatgaactataa
gatgactcataagagtgcctaggaccttgaaaaattatcccacaacttatctcaaaaatgcaaaagaaaagattt
ctaggaataaatttccgtatcacatgtgtttcgaaAAAGGAAactcGAAAAAAAgtagaaaagacatcaAGAATT
ATagccgttgcAGCACAGTTTGTTTgatttTttGAGTCAGCaTTTTagtattttatcgttacgttatagtaatcc
taaatttgttgaactaactttcaaggcagctatgagatttgagaagatctttgaaaaaaaaatcatatctcaatt
atttctacagactgaaattgtaaatttcaaaaaatctgaatcgacacgtcgtggctctaaagagagtaaatgagc
tctaaacagtactaaagaaagagtttggcaaaactaaagtaatcccagaattttcaagaattgattttgaaaatg
ttttgtaGAAAAgTtaggCCAAAAAattcaaatcaacaAAAAcTGACCaAAAGATCATTACGTAATtGTCAATAG
tGAAAgAtTGATAGAagaaAGAGcaAAAAGAACAAAATAgataagcACAAggaagCTgaaataattgtgatttga
actgattttctagaaactgaaaaactttgaattctactgagagatatAAAcTTaAAAGTGtAGGTTGTAAAACAA
AAAGGCGCCAATTTGTCGTtGGTGAAtAAGAAAcatgGGGTGCGAGGAAAAGATGGTCATGTACCTGAAAAGAGA
GGGGTCGCCGTGTCTGTGAATTggatgaagaGAGATAGAGAGAAccAGAGAGtGAAAGAGcgAAAGGCCAGTGTT
TTGACATGaACtGAAGAGTTGGCGGCCCCtAGACAGACaaCTAGtGTaCCAcTGGGAATAGtgTTtagaGtacAt
AGAcgCAGAtAgtgAAAGaAAtTATACCATtGtgaaGGGAtTCCGgCGGGaAAAAGGCGAaGAGGAAGAGGAAAG
GACGGAATAACATCTCTCaaTTTCTgaagatgagagaaacAGAAAAAGAtATGAAAAGAGAGTCCAGAGAGAATA
GTGtGCTCTCCtCTGGGCTCTGATGttggCTGGGGGAGCTCGGAGTGtCCCCGAAAATCAATGGGTCCTTGCGTG
GTCTCCCTcGGCTgCTGCCCGGCTCCTCTCGCTCgTTCTAGTTCTTTTGCAGAGCTCCCCTcCcatcgaAGCTCC
ACCCGCCTTCaACGCTAGTCGCCGCAGGCTGTTTTTGGCGCTTTAATCAATTCCcCtGTCgTTGTGTCTAcGTCT
tttatgttcTTCTTTTAAAataCTGCTCCcaaagcgatatgatttagagtctcatcccaaaatgttcaaaactaa
atgattgaaaatctcttaaattttcttgaaaactcttcaataacgcaAAGCTCATTTGCCTCGCtCCATTGGgAT
CgCATTCAAAtGACGAtTCgCTTTCaAAAAAAAGAGACGCAGAGtGGGtaccctcCATCTTCTCCTtTTcTTCTC
AAAAGTCTTTTGATAGATTTGTTTCCCTCAGTCTTCTTTAGTatTCTcaaCCTtCTTTTcgAATCTTTTTcTCTA
ATTTTTGTACTACTgttaccagcatacCATGTTTACATAcactcgcaatcctaaaagccgagatcttgccaagag
aTGAGTGCATcgtagagcatcacatttttcgattgttttcaatgatttttcaaccactttaaataaatttgtaac
attatggtatattttgaaaactgtgagttttaaatattgtagttttctagaatagaaacgccatcgaatatataa
tatgttgcttccgtagtctcgacagtattttttctaatagtactacacacaatttctcaagtttggcagcttata
tctcagctgttgtttgttttattaaaaaattgttaactgaaaaatatgttttatttcattttcaattgtttttgt
atttgcatttttattaaatgagccacaattaaaactttcagagtgatgtagtggggtgcaatattaatagaagag
atacagtatctatttttcatcaaacctgaaaaacgcagttttctatttccttaatcaacattaaaactagagtaa
gataaagcatgaaaattttttaaaagaactaggtataccatgagatattccccgatccgttttttttgacttcac
caacgaaaatgagttgtaattgtaaaatcttgtaatataaacgtacttttcatacatcatcaaactaaatattcc
atgtcatagatttgtttataaacctagttcgtcatctagcaaatccaggaataaatccacaaataaatcaaagaa
cgaaagcttctttttaatctcattatcttttttctttacatttctattcttttctgtctagaaatacgaatccac
tttaattaaacttttaccaacgactacggtatcgctattttatcactttttgttcgaatcaaataaatagtttgc
catgtcacaagcctctcatttcaagttttcatgcacatttctcggtatgcttctttggttttgaaaatcatcttt
ctttaaaatataaaaatccttataattttgaacacttaaatcagtttgtgcaccaaaaattaaagttcagtgaag
tctaggaaatttctttttttctgatcggtttttttcgttgaaactccctcctttgtctttatgatatagttatag
aatttcagatgagttcttttcaatattttctagttttccttttgatcttacaatgcactggaattatattttata
ttatgaaacagatctttaaaaaatacttcttagtgagaaaaatacaattttctcgatgttctaaacatttgaggt
ttgaagaacttagaagttagactttaaaaaatatattttacgattttaactgcatacatttcttgattattcgtt
tcctaacaaagatattcacataatgcaatgcgaattatcAGTATgCAGTcctGTAATTAGTGgaaATTCATCCGc
TTATcATctttcTTATACCATTCatcagcttatTTCCAGCTCTTTTTCAATTCaTTTTACCCTTTTCTCTTTCTC
TCTTTTTCAATGTGTaTATGTATTCGATTCGtGTCTCGAATTTCATCCTCTTTCTaCTTCTTCTCTTTTTCTTTC
TTTCTTTTtgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct
ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctctctctctcTCTCTCtctCTCTCTCTCTCTCTCTcTCTCTCTCTaTTTTTTCAtTGGCACACTCGC
aCTCTCTCGACTCTCACTCACACGCTCACTCACCATCACGCTCACTCTGgGCCCTATACGTGATGTGCGCGTCTC
CTTTTCCTTGTCGTTTTCTTTTCCTTATTCTTtttCTTATActgcCTTCTCATCTTAATATTTTcatgctCTTTT
TgctCTTtTGTACgacatacAAttcatatatgctcaactcatcTTTgcaGACTTTTGTGGCtcaaCAcCtcgtTT
CttTtgcacCcgaaccgcaCCCACGGTAACACGGATTCTGCGAGGAATGAAGGAGTAGAAGAtaacgGGaCattc
cCTTGTGTCAAAGTGAGAGCCaACGACGAcgatcCTAAGAAGtatAAActtgGAAGAgtattcacaaaagtcttg
aagactaaaGCTTCACaATGGCTCTaCCAAGATTGAGGTTaGaTTCActtcatcttcaaaaaaaacagcaaaata
tattatgtttttaattctatatatttcaaacaaaaaacgtttaaagattagtacccaaacaaattatttattcta
aaaatacaaagaggttttttttttttgaaaagttgtaataaaaaagtttttgtactttcaaaatttcctgtaaac
taatgagtgaaatgatctcgagcaatagtttttttaaagtttatttgactggaacggttttgggtcttgtgaaca
agcaactcattacttcatattcatacatctccattcaaatttaatactattcagtgttaaaaaattaatctcgat
tatcaccatgttcaactatcgataggcatttcaatgagatgtgaaaagttctatagaacaatgtagagtctcatg
atttttttaatatgcaaaataaaaacatttggaaaaattgaaacttccgggttactatatgcaaactgttatcat
tgtagtaatactgctgcgtgctttgaatagtaagtttttttgctaatttttgaaaaatatattattttagaaaac
ttttcaaacacttttaaatttttttatttactgttaaaaagtagcgatcactcagtttttttctttaaattgttt
taatgctctaattaggcttcaaattcaaattttcacactgtaggggctggaatatgcgacgttgcttttttcaaa
aagtctgaaatatttaataaatttgacaatccacctaaattgacttaaattatttgattgatggaaaagtattta
ttcttaaattttttaacagcaaaaaataaattttcctgcggccattaatttgttggcagtcacatccagctttcc
aaaaaaaacaacgaggaaaataatgaaaatctgcactaaaaagtatgtttaaaaatgtggattacgaacttatca
ttgaaatttctcgagctatgcatatattttggctgccttgattaaaagtactgtaggtcccctatttacttttga
agcttattggttctagttgaggtaattttgtcattaaaaaactattgcgtagttcatttccattcattcgtgaat
attctttatttatctattcgttttctatgtatatgaaaatcaccgaaaatttaggcaattcgttctttttttttt
gtttctttcaatgttgcaatgtcagttgctaggtcgtcgagagcattttttgtgcggatgctactcAGCCAATTT
gTCGTTCaTCCGTCGCCcggcactAGTactaaAcacaAATTCTCATTTaCATACAAAcgtttggagaatacgatt
tagtggagaaaagctcgtagtcttagcctttttctacgcccaagaaaatttttgtaggctactgcccaatgcttt
aatcttgctttctttttgtggtttacgaaatacaaaattctgtaaatcctgtaaagggcgggtgagaagaggcca
agacattgtgtcttctgatttattttcattcattttctaagctttgtcgtagtgtgttcaagaaaagatgctact
ttccaactggtaagtcagtgatttttcttaaatattcacatggacatagtgttgcgtcagaacCAATTTGTGATg
AttgacagaaCCaAGAGCtacaacttccgtgaAAAAtAGAAAAAAAACATGAAAACtctgaaaatgtagagcgTT
TTTCcatcttgccaaaAGTCCCAGAAGTCCtactaAAAATCACGTGAAGTGGaGATGGggtGCCTTCATGGGtTC
AAACAAAAAAGAACAGAGAAAACGAGAAGGGCTGTAATATTTTATGTTCCTCaTCCTTCTCTTTCTTCgTTTTTT
CtTCTGTTTTCTTGTTGTTGTTGTCatccgTGTGTATATTCTTTCCGCCAAGCTTgcccgCaGCtTTTTAGAGGT
TTTTTTTcGGGAaAGCTTtttCTCtctgTTCTTTgTGTTTTTTCCTtTCACTACATaaccaatgCAGATGTTTTG
ATGTTCTTCGAGAAGGAAAaCTTCAgataggaatagggatagggaaaaagatATGcAttgcgaaatgtaagtgcg
ccatagaaaatagttagatatttttgatggttggttggaaagaattcaatttgataacattgatccttatttttc
atttatcatgttccaccttttaaaaattgttacttatagcttcacacttactaaaactacagcttaaaagcttca
atcaaatccatgttgattatttaccagtcaaactgatttttttttcattttttaaataagctgccaaaatggagc
atttggaaacaactatacatatatgaaatttaaaatgtgcatatgactatattcctggacgatatcaattttttt
tcatgaaatcatctgaaaacagctgtcaaattcaaatttagtgaagtggatttttttgaaaaaaatatatgaaaa
atatttgcaaatgttatgacgttttgagtagtgacatcacttcccaagtgcatctcaaaagtaattgatgcatat
aaaacacgaaacattgtattattactgaaacttgagatgtatcataactagggaaaaccttacattgattccaaa
taatacgtgacgggTTTaCAGGGTAAatGCAAGCAACGAGGAgCGtCTTGTaCATCCAAACCACATGGTGTACCG
tAAGATGGAGATGCTtGTcAATCAAATGCTTGATGCAGAAGCtGGtGTTCCaATCAAGACtGTCAAGAGTTTTCT
GTCaAAAGTTCCATCtGTaTTCACcGGaCAAGATCTGATtGGATGGATCATGAAAAATCTTGAgATGACtGATCT
TTGTaAGTTgccgcaaATATtTTgTATcgagaatcagaaaaATcAAtTTCAGCGGATGCcCTtCATCTGGCTCAT
CTGATcGCgTCaCAcGGTTATCTTTTcCAAATtGACGATCATGTGTTAACGGTtAAAAACGATGGAACaTTCTAT
CGGTTTCAAACtCCaTACTTTTGGCCgTCaAAtTGTTGGGATCCGGAAAAtACtGATTACGGTgattcttgattt
tttgaagctgaaattagtatcatgttttgttcatgaaaagtatttgctattattttcaggatctttgtgagatgt
tgggcagttttagacaattctcatgtgattgaaaactcagagtttgaaaactagtttaatagaatccatttagct
acaattttaaagtttttcaataacataaaatcaaaccatgctgaaaactgctgagaaagctgagaaagcaaaatt
ttgcaaaagcAAAtatTTTCAGCGGTGTACCTGTGcAAgCGgACAATGCAgAACAAaGCGCATTTGGAACTGGAg
GACTTTGAAGCgGAgAAcCTGGCAAAgCTgCAGAAGATGTTCTCgCGCAAgTGGGAATTtGTGTTCATGCAAGCC
GAaGCTCAATACAAGTTTGTGATaTTcTCTTcTCTcTTTGCTGCAtTCCGCGTGTatataTTTTTTcTCGttCGT
CGtcttttCGGGCGCTCGtgCTAGTTTGCAGTGCAtAGCTTCTCAGTTTCCACCAACTCATCCACTTACATTGTG
TGAATGCGTGAATGACGTCAAGAACGGGGAAAAgGGAAAGAAAACGagcAAGGCAGTgGGCTCGTATCAATTTTt
GAcAAAAAAGgGTTTgAgagaagaaaagttcattttccaaaaacaatgaaatataaattagtgggatttaatcct
ctaaaaaattgtatgttttctttttcaatatgtgaatcggaaccagcagaaagtccggtaaagatgtcaaaattc
atgttttatcaaatttactcgttttttgaacattcaagtcacaactgatagtgattggggatatcaaccaaacct
caatcaacaacctatttccataacctttctgaacacatcatttcggggaaaaaactaaaattttatgtgggtgta
gtttctgatgacgTTATCTctttcttccgcTATTACCGATTttcacccaaataaagggcctgctgttttattttt
catctttcgagtttttttcGAGAAgaagagcAAAGCACTTTTgttgagaatcggtcggacggtggtgAGAAGAGA
AGAAGATGGATGTGAATGTGatggaatgGAGGCGCCGAGCCAATCCAAGTAAATTGGAAAAATCGACGGCgCCGG
GAGTCGGAAATAATGATgatGAAGACGTaaaAGAAggggtgtagaTaGATcgagaGTAAGGAAGAATAAgaaaaa
aacaGAAGAaGAAGAAGGCGTGCTTtccCcTtTGGATTAGATGCAAAAAATCGGCggGAGCTCATTCCattcctc
cgtacttttactacaacttcctccacattcctaaaattcttctaatcttctgaccatcagtattgtgttttgctc
ctgcccaaagatgggtggttttcgaagacttcgtcatttattttttaaaaagactccagatgaaaaagaaaataa
aagatcgtcaactgacgaacaaaagtgggttcacaataatcatattttgaattgaaggaaacaaatctcaaacat
tatacttattttaattgaaaaaaaaagaaccactgtcttgcaaaacttctttctttatctattcttgatcttgca
agttCTAgCCCaTACTAATTAGTGaGCgTTGCGCGTGTTTTATCaGgCATTCTACGCAaCAATAAATCCAGGACA
CTCAGGGTcGACAAGAAGCGAGATCGcCAGGAGCGcCAaATTCTtGACAGTCAgGAaCGTGCtTTCTGGGATGTt
CATCGtCCaGTgCCaGGATGTGTaAACACtACAGAAGTCGACTTcCGgAAGCTtTCacGgTCTGGAaggcCCAAG
TACAGTAGtGGAGGaCAcGCaGCaTTGGCcGCtTCaACGTCGGGtATcGGtTGCACTCAgTAtTCaCAAAGtGTg
gcAGCaGCTCATGCgAGTCTTCCATCAACATCaAATGGgAGTGCaacatctccAAGAAAgAACGAtCAGGAGCCA
TCAACATCaAGTGGgGGTGAATCTCCATCAACaTCgTCTGCTGCtgcTGGaacTgCcACaaCAtCtgCaCCATCA
ACaTCAACGCCTCCggTgACaactatTaCtgCGTAAGTTAAAATTTtcaATTTTCagatataaattctTTatttg
AAAatTTTcAGaACGAtaAATGCaGGATCATTCCGaAATAACTATTACaCaaGACCTGGATTACGGCGgTGTACa
CAAGTACAgGAtACGTTAAAACTgGAAATTGTgCAAtTGAATAGtcGaTTATCAAAAAATGTaTTACGtACaTCt
AAAGTTGTAGAAAAGTAAgctttaatagattatttttaaaagatcaatATtgtTTTCAGTTATTTGGCATATTAc
GAACAACGtCGAGTaTTTGATCCACTGtTAACgCCTCCtGGATCTCAggctGATCCTTTTCAATCaCAgCCtAAT
CCATGGATtAAcGATACTGTtGATTTtTGGCAaCAtGATAAAATGTgagtttctagagtttttttgccgaatgtc
acGTTTCaACTAaaaaTTTTCAGTACGGGAGACATCCAAACcCGcCGaCTCAAGCTTTGGGAgGAtAGTTTtGAA
GAaTTaCTTGCTGAtTCaTTaGGTCGaGAaACTCTTCAaAAATTCCTTGACAAAGAaTATTCTGGAGAaAACTTG
CGGTTTTGGTGGGAgGTaCAAAAGcTGCGAAAgTGCAGTTCaaGAATGGTTCCaGTTATGGTAACaGAGATtTAC
AAcGAGTTTATCGAtACAAATGCgGCaACGTCgCCgGTCAATGTgGATTGTAAAGTGATGGAAGTGACCGAaGAC
AAtttaAAGAATCCAAATCGgTGGAGttTTGATGAAGCAGCGGTGAGTattaCattatagtgagcagttcgggga
tgggaaaatatcattttcggcaaatctacaattgaacttttttgacatggcgttccaatatttttcattgaaatg
tggagcaagagtatagaaaaatatattcgaattattagaaaaaatagtttgattaaaaaggtgttccaaacttgg
atgaaaaaattgtataattgccaaaaataagtgcccactactgtttctcatatagatttggcagcatattgagtg
ccttgtaaactttaacagatatgtatgtcagaaaacccttgaagaaatattgtgaaccactaaattataaaaact
atatgatTTtAcTTTCAGGAtCAtATCTACTGcCTtATGAAgAAcGAtAGTTAtCAACGcTTTCTTCGTTCaGAa
atttataaggattTaGTATTACAATCaAGAAAGAAGGTAAGTCtcaaTTGCTCGTTttCCatTTTTGCATCTtga
tTCCTCTGAAaCCCCTTTCAGTTCCGGTTTTAGCTTAGTTTGATTCCCACCttttttcCcttCCCTTCCCCCaTG
AATGTTTtcttttCACACTaTGAGATATGTGTTTCATcTaTTTTTCCGATTGAAAGCTTACtGAATGCTCGCTGA
AaaacTTCAAAtAacaaactcagaccaaataacatcAAAGTTcGAGcAATTTattttttttataccAAAAGCATG
TTcAAttgAATATcccATTcagtCACTAACActCTGATTTcaTTCAGTtaattatatttttacaagtaggatcaa
tacacctcaatcccaatcaatctaacacatgttcatcccgatctcactaaaatttcaacatttaatatttccaat
ccaaaacctaaaacgttaaacatttgatcttgtttcaaaTTCAAAATtTTCTAACaTTGATTCAGACaACGTTTA
CCTCaCTGATTGCTCGtAAAGCaTCGCGaCGCATCGGaTCGACAATGTCGCGGAgCTCGCAGAGcAACAAAACTC
TGCATGCGAGCGCCTCTCTcGGCTCGGCGCTTTCCGGTCACGGCTCtTCCACATCaTCAATGCTCACCGCcGGAG
GAGCGGCGTCGAGCCAGAATCTgCTGCTCGCCCCGCCACAACATCATCTGTATGTGCCCTCactctctctctcat
acactcacactcaacactcactcccaatgaaatgcagaatgaatgtagtcttttgacagaaattgtggagaatag
ggatgaggaaaaatgaggaaagatataagtttaaaacttgaaaaacgttccaaaaattgaaaccaatattcattt
ctttcaatatctctgatctttccaacaagtccggttcattccacagactttgcaaaatctctgtaaaattttcct
actttttcttgacgcaactatgttcattcatgtcatttgacttctccTctcaTTGTCcaAAATCttGTCACTGGT
tACATTGGTCACGTCCACAgcgtCACACAtcttgcaaTAATCACTAATCACTtTTTGTCCTGTCACTGTcCaGTC
TGCTcTTTCACTGAGTTTCAcTGAAATTTTCgAAAGCATGTCaCTTGaTTTTttcggtttgctgctcacattgca
cggccctttgaatgcacctgttgactttggtttctggaaaatactgaaaatgtgttttgtgtgaatttgtaaatc
tgaaattgcaatgattttggatgatttcatctttgagactgtttgctctgctattgtcttctctgaactactcga
aaatttgaattgaaaaaaaaagaaatattttgataagttctacaaaacatgtcataggagtcaaaatagttttta
taaaaatgggcggagttaatcggtgattgatcttgcagttttcagcttggaggaaattcaaaaaattcgtcagtt
ttaagactaccttattttatctattattgcttccgactgcctactttgaacaatttttaatagaataaacggcca
ctgagatataagctgtcaaagttgaacaaggggcattaataatagaagaaatatttctattatttcgagacttaa
tctcacgctatttcgaagtattgtccaagtgcaaacttggccagcttggagaaaatagaactacagtagttctac
tactatttcagtttttcatataaaaagttttatgttttatattcaatcaaataatcgagaagttcaatgtttgcc
tcttaattccttttttctgccccatccctttccaggctttcatttcctttttcctcatatcaatgaaatATttTa
AaATTTCAGGTGAAtCAAAAAGGTCCAAAAgGTTTCTTaACtGGAAATcTtCCATCATTCTCcAATGCAGTaCGt
ACaAATCTTCATGTtGGACAACAAGGATCaTCgTGtTCaCCAACaTCAAATGCTCCtCcttaaagatttcaaaat
tactagTTCTttgTTTcTCTATCGGTtGCTTcTAGATGGGTTTTtgATTAGCTTCCGCcaccaTTTTTCgtaaat
cacttactctagcattatGTGTTCGTTATAGAACACactccaccagtttttgtttcgtttgaaattatacacgat
ttcagtgcaaactttggtatccggttgactgaaaatcacatattttgtgagctattcttaaaatttatcctacga
tcgcaattttctgagacgagtatttcaagacgcactggtatatttggatgggtctcgccacgagaaaattttatg
gctgtacttgtcagaaattatggacaaaatcaagaaaatttgacaaaaactgataaattttcatttctgaataaa
acgaaaagcaatcatagaaatattcaaccataaaatttttcgcgacaagacccatctgaagaaattcatgcgact
ttaatccggagtttcaggaaattaggaaattacgttattcttaaaatataaccacacacttacaggttcacaaag
ctttaaactaggccaattacccaaaaaataatttagaaattctataagaatagctttcaaaattattgatttctc
ataaagctcaaaatgtgaacaattttgaaaccacgtggatatccaagaccgcacaaaaatcttctcaaaactgtt
gttgctttaattagtgtgcttttttcgattttcgtgaaaatggtggattttgccaaatgtgctaaattcctcata
tagtttccCATTTgccctttgtattTTgttttatttctCTCAATCaTTTTCCGGTTttgtctttaaaaataaTTT
CCTCTTTaTCCTCAAaAAAAATTaatttGCTTtTTCtCAaTtgcATCTAGTttTGCactcatGCATTTCcGaACA
TTCCGTctttacTTTGTTTTGAAAAAAAAAccaaaagaatcGTTTTctttactctcattcgaaatcaccAAAAAT
CTAGATCcCAATTTCAAAATTactcgttttgactgcaactttccatagaatcGCTTaTgTTTCttCCCCtgaaCG
CATTTATATTGcATTAATATTATTGacaacactttaATTtGGTAAATTTggttTcTTgtccTCatgTTTTtTGAG
TcTtcgCCCgTTTctCATGTAaatctcagtcgacgCTCTCaTGCAAcAtTTGATGACCTCtTTTATGAATAAATC
gTTTGAAAatcaaaacaaacacgggttggaatagattacataaaaacaaatatttaaaataaagccttgaataga
aagtggctgtgatggatgactatttgGAAgGAGgaAgTgtaatttctggattccgtttggcaCGTTCTCGCTCTC
GcCGTTCTTGggtTTCtATGTAcCGaAGcTCaTCGCGaACCTgAAaaTAaaatgtgatttttagaaaaaaaaaat
ctgatacgtactcgttgggcgacttcagCtTCTTTcttgcGaTCTTCtTCTTCTTTcGCCAatTCtTGTCTtGTt
TTCTTtAacgCTTGAcTCATctgcatttttactcgtctcgcttgctccgttttccactgttgttcaccatcaTCT
TCATCaCTgCTACGATCATTtgatgtctgtccacgtttcTCTTTaatcaaTTTCTTTGTCAaTTTtACgCGcCGT
TTTCGgTTtTCaATTTCagcTTTTTCCTTtTCtGAgTCcGACATACTCGAcctggaaaatgatgattatgcccaa
catTTttctattttcaagttttaccttatttccaacATTTTtaCaTgaTCggaATCACtgtcttcagCgCTACTc
TCTcTGGgctcgtcaactttcactggaggtttctcttctgaaacaacacaagagacaacatcatcttgtcgtacc
acgttctttgatgttcttcgtttctcatttctttcatctctggatctgtctctagatctgtctcgtctccgatct
ttcgaacgctggcgtcttctactcgtgcttcgaCTTCTgtgcCTTCTACgatccctggaccgactacgtCTACGC
tctcgacgaTCTGGAgaatatCTACGACGATCACGCGAACGACTgcgtcgttgcCGGTCTCTgaataataaatat
tgctttttcagtttcaaaaataaataaatatctaacctagaacggCTTCTTcgtctcgaattacttcttcttggt
cggcgtcGATCTcttGttcgtgaccttGATCtactTCTTCTTCTTGgcggGGATCtACTTCTTGAAcggcttctc
gatctgctccacgaTCTTCTATTcattcctccattacccccaccaACTTTtAGatttCCCCAgTCAACagCATCg
TCATCTTTTCttcgaTTcTGGGAcAGTTTcAaAATTTTTCGATAtTCTTCaGAcGGgAgTTCtGGaCCgACAatT
TCTTTTTTAAtTTCATCATCACTgTCtcgATCggCaCCaCCTCCAAAtGTtGTaATGAATTCaggtTTTGCaCGT
CGatcaTCATCATtATCgCTTCCTTCCATaTCTTCaATCAaTTCATCGAcTTTcGATTTTTTCTGACTTTGATTG
ATGAATCCCAgaAGAGTaGCaGTtGCtCCaTTTTCAGAAACAACCATTCCTcTTTTTCCaACAATgGCTTGACGT
TGTTGACGAAGAAGCATTCtTTCATGcTTTGATTCtCGaCCCTGAAtaaaataatttaaaaattggaagtaatcc
aacgatatatttcttctgattttcgtcaatgcttgataacgaacaataaattaattttggtagaaattttttgag
gcAATAATTACTTATGGaaatATGgtTTACGGACAGAGAGCgcaGCCTTTTGaCGATCaATTTGTTTCAaTTGTG
CgGCaTCcCGCAACGCTTGtTGATCgGCTTTTAGAAGAGCaCAGAAtAAccctcgttttacaCCaAACTCTTCTC
CACTTTTgTTaACAgTCCtcTGcGTtTCaGGaTTgAGtattgaagtatcaagatcgacatctgttaatttttaaa
attgttataatctatccataatagaaaaatacccaagtcttgcatatcatccatttcctcttcttcgctgtcgcc
atcagagttgtacttttcatcttttccgcctttcacaacttccgagtcatcgtaactaAATCCAATCgTcGAcTT
cTTttccgcgGActtTTTCTTtTTTTcagtTTCcacTTTTCtattgttatctttttctgcacaccagaactctcg
atccgcaatttttttgagataatgtttttccgaaacttttttgtaatcgtttataatgagcacccggtaacgctc
gAAATCcGTcACAATttgttcttTTTCgTCAacgatTTCggTcTTCgtttttgGAATtattTCATCgATatctac
TAAATCCATTTTAGAtAGATGcGATCGAgCgTCAAAtCGATCAATaGTAATaGtGGAATCtCCTTGCCACGGcct
tAagATgTTGGcGTCTTCAGCaGCcCGAGCAATTCCCAAaTCAGCgTGAAtCTGGGCTTTTCGTCCaTGAATcTG
CATGAATTGgTCTGGATCTTTTCgCTGAAAAAtgtttaactaggatttttAAAGAAAATtaataacaaaactcac
gACATTtTCAAAATATCTCCGTTTTCGtTctgccCTTTTTGATTGATCGATCATtGTgGTgCGCAGaATcTTCTC
CTGCCGTCGcGCTTCGTGCCACATTTTCTGAAtcgaaatatttcttgaaaattattgttttaagtttaaaattaa
aaaaaaatctgaatacgggagatatatttatatttatttagctatttagataaaagaaaataaaataatcgctcc
tgtgtagaattacgctaaacaaagcgatgcaccgtaataacggagttttgtagttggcaattagcgggtgttcaa
atatgaattttccttgctcgaggaccaactgtaccgggcctttctttttttccgttttttgtaacatatcgtaga
atataactttttttaaaaactcttaacaaagttatttcatgtactgaaaaaaaattaatgaatatttatttcaac
ttgagggtcgtgatctattgatcaaaccctggtcttacttcatttccacccactgtgtaaactggaacataatat
gaaatgtaaacttgaagcttctttttttttcaaaattttgttaacttccccttttattctccaaacgaagcagaa
aaatgaaaaaaagaggaagaagaacaataccatctcgaccattcgacctttgcatactttcctgtttacgtcttt
tcacactattgaacattgttctgggtcttcccattgttagtaaaagaccttcttctagtaat
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Enhanced BLAT Score Card

 (Back to Top)


 Nematode EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: egl-10 locus
        

     Reference Genome: C.elegans
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              C.elegans
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            17837
            1
            17837 0 102 
  
           
            206
            4580
            4786 0 
                 0 /
                 104
               
  
           
            102
            4583
            4684 0 
                 0 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.brenneri
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            6466
            777
            17202 0  
  
           
            2034
            1527
            8861 4 
                 146 /
                 1888
               
  
           
            2170
            9830
            17207 2 
                 327 /
                 1843
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.remanei
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            6387
            66
            17827 1 65 
  
           
            191
            4488
            7134 0 
                 45 /
                 75
               
  
           
            130
            4133
            4789 0 
                 28 /
                 31
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.briggsae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5763
            917
            17213 0  
  
           
            172
            5343
            8952 0 
                 139 /
                 13
               
  
           
            156
            1480
            11319 0 
                 125 /
                 11
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              P.pacificus
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            121
            8503
            8641 0  
  
           
            148
            5650
            15373 1 
                 148 /
                 0
               
  
           
            122
            10237
            17037 0 
                 122 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
C.elegans egl-10 locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the C.elegans egl-10 locus reference sequence that are conserved in the C.brenneri, C.remanei and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

C.elegans egl-10 locus Genomic EvoPrint (Back to Top)

egl-10 locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.brenneri, C.remanei or C.briggsae.Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Enhanced BLAT Score Card (Back to Top)

Nematode EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile
