Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
To curate selected conserved sequences in both forward and reverse orientations:

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Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  C.elegans egl-30 locus Genomic EvoPrint
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      Black capital letters represent bases in the C.elegans egl-30 locus reference sequence that are conserved in the C.remanei, C.briggsae  and C.brenneri orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 5' --> 3' direction)


 agtggtaagtatatttcttttaaacacgctcttaattacccaaaaatggtagaatatcaagtttcaaaaatgcag
ctttttctaattaaatacaaaaattaaactaataagttgagttttgataagtttcaggtttaaaggtggactacg
ctcagtggggaaattgctttaaaacacgcctaaagggccacaatggccgaatatcatgattaaaaaaattcaaaa
aaattatatagattttatatgattttttgaaaattggaaaaatctcagttttcaactaattcctatttgaacttc
tgccaatttatttgttcgatggagcgagcttccattattttaattaattaattttatttattcttgttatgtgac
tgatttttttcatttttctgtttttttatcggaaaatgaataaacaagacaaatgcgaaatgtttgtttaaagta
attgaaaattcgcgaattttaattcgtaaaactataaaatatactaatttcaggcttgtagtcgtcggaactcct
cagaatatcacagttttatgcattttcagttactttttagtgatcatttttcatttgtcttgtttatttctttca
ttttccaataaaagaccaaaaaaatgaagaaaatcagtgaaataatgagatgagatgaaataaaattatttaatt
aaaataatgtaagcgcgctccatcgaacaatttcaattggcggaaattcaaattgaaatttgggcaaaaactgag
attttttcaattttcaaaaaatcatataaaatttagaaaatttttttgaattttttaatattgatattcggtcat
tgtgaccccataggcatgttttaaagcaatttccccactgagcgtagtccacattttaaactgacaatttcgaat
tttccagtacttactttataaagcagataaagtatatatcctacactttttgatcgttttacaaatgtgctctag
ttcacacgtacagaaaaatctgttccctcaatggtgtttcactttttgatatcttcaccaagaatggtgttgaaa
tttgtgcttctacagctttgtgaagataaatttgacacaatggggcgaagtcatgactgaaattgttccagtttg
tgggtcaccgaatttgatcgaggagaagaagcaaaagaagcggaagtcaactgttgcggtggttatagagaagga
gaaggaaaaggaggaagatgctgcaaagtctccgatgagaaaaccgtctgaaacaccgaaagtgtctactccgaa
agctgctacaactcctgttgaagaaattaaacaatacgaaaacttccacgccccggtcaaaaagcgaattcaact
ggtctccctcgataacttatttttgaattattgaactccctgatgattattttctattatatacacacatataaa
ctttttcgatctcttaaaacagtttatttagattctaaaaacagtaaaaaattgacttgatccttacaacgggta
ggagatcttcgtcgagtcggccggctttgtcacgtatcctaagaacttttgctcgcgaagaatccgtctcatcag
cattaatcggccgcctcgggtttccgtgcgcttttcgacagtgtcaacgttgagcttctcttgcaatttgtacgg
gaaatagcacggccgaaaactgtttctgtgccacgggcaattccatcgaatcgattgaaatgtgagcgaattgaa
acgaagcagttgctgcatctggaaagaattaagggattgaaattgaaaaaaactgcgaagaatgattctaacagc
aaaaactatcagtatttcaattgatttacgctaaaaacacaattttctgagcataaatttataaattcatcaaat
ttttaaacatttcagcaataaaaacctcaaaaatacattagaaaccagaaaaatcaatttaaaatagaaataaaa
tgcttgtgtcgatttacgaggagaaacaatgtTTAAAGGCgCacgcaatttccgtttgGGGTCTCgCcgCGAtat
gccctttctcactagttttctgctgccatctcgtcgaGGCCTAAATTTTTTTTCGAATTTTTcGAcgaTTTTTca
gcaaTTTTTgagtttTTTCAGcatttttatatattatttgaaagcccattttcttgtgaattgaatgactatatc
gtccatcgaaaatctttgttttccatgaaaatttgtgtTTTAGATGACaAAACGcCGtgCgAGCAAtAAAAAGCC
ttCGGGtTTGAACAAATCaCTTGGtAATTCgCTtAGCAAcGATCGtgagAAAActaggAAAAGtCAtCAaCGtGC
aAAgTacGAtGGaAACGAcATtGAgAAtCCaGCtTTCATGGAaCACGAaGTcaatcatTACATCGAcTCgGTgAC
aGAcGAaACtAGttTgGAGGAgTTTttgGCtAAAGCAGAACTtGCTGGAACtGAaTTcACcGCcgagaagGAgCA
gTTCAAgATTATtGAaAAGTGAGTTtctgagcttaatttgaattttacatatcatttatttgtaggaacTCcGCt
ATtGTcGTcCCAacaaggctggacTAcCGtGCcAAtCTtGAcCTtCAaAAgGAgAAcGAGCAcCGtCTTCGgAtt
CCaAGacgtccagcaAAgGAgCTcTGGGAGAAcATGGAgGAttTgACtaagcTgGAaAACGAaGcaTTcCTtCAa
TGGAGGTCCGACCTgAGCGAGCTGCAAGAGGCACGCGgaagTTTGAAAGACgATTAAtATTttattCTTCAGGTG
GAcggacTgGTacTGACtCCtTTcGAgcGaAatcctGAcATGTGGAGAGAgCTcTGGAGAGTtgTcGAGAAgAGC
GAcATCATtGTtCAaATcGTgGACGCtcgaaatccattgctgttccgcagtaaagatttggatgactacgtcaag
gaagttgatcccgccaagcagattcttcttctcgtcaataaggcagatcttctgaaaccggaacaacaggccagc
tggagggaatacttcgaaaaggaaaatatcaaagtaattttctggtgagtgacgcgataaaatcaatattttcta
aatatattttttccaggtcggctatcgatgaagtcttagatccaatcgatgaagacgcagtagaaacatcaaatc
catcaacttccacacATATGTTCgTaACgAACAAgGATGAgCTgATtGCgAAgTTCAAgGAaCTtGGtCAcGTaT
CaGATGAgCCgTCaGCaAAgCCAGTcATGGTtGGAATGGTtGGcTAtCCtAAcGTtGGAAAaAGTTCtACgATCA
ACAAgCTgGCtGGtGGaAAgAAgGTtTCaGTaTCagcaacACCcGGAAAgACgAGaCATTTcCAaACcATtCACA
TcGAcAGcCAaCTaTGcCTtTGTGAtTGTCCcGGACTtGTcATGCCTTCTTTctcttttggacgaagcgaaatgt
ttttaaacggtaactcgtagttttaaaataatattttccaaattcgattcgattgcaggtattcttcccgttgat
caaatgcgtgaccacttcggcccaacgtcgcttctacTcTCccGtGTTCCaGTtCAtGTcATcGAgGCgAcaTAC
TCgATtATGCTgccagagatgcaaagTCCtTCtgCaATCAAcTTgCTtAAcTCgCTcGCgTTCATGAGAGGaTTt
ATGGCgTCgTCgGgaATTCCgGAtTGtTCcAGaGCcgCgaggcTGATGTTCAAgGAtGTTGTcAgtGGaAAatTg
ATtTGGGCaGCcGCaCCtCCcGGaGttGAgCAaGAAGAgTTtgacCGaaTcTCcTATCCAGAcaaGAAgacTCGt
GAtATTGGtCGgGTgCAgATGGAaAAgCTtGCcAAgCTtCAgcTtcTcGAgGGtGATGAgttgAAgGGATCaCAa
TTtGACTCtCAACAcTTtgtcGGatcaaTcGGaGTtGCtCATGTcaGAGAtTCaAAaGCattgcctcaaacgtta
ggaaccgtcattccaactgctcctaccgaaaacaatggaaagaagcattacaagGgAAAgAAgGAcAAATTGAGG
AGGATtTATAATGAATAAAgtcacTctTctTGTTAtTAcTTTcaaatgtttttactgttctactggtttccaccc
aggctatatctcaattcttttgctcgtctcttatccttttaatttcttctattttctttttcactaaTacTTTTT
tcAGGTAAATATGGGCAAGATTATGAAGCCTGGAAAGGTCGTCCTCGTCCTCaGAGGAAAgTAtGCTGGtCGCAA
GGCCGTCGTcGTcAAGCAaCAAGAcGAGGGAGTttCgGAcAGAACcTAcCCACAcGCCATCATtGCTGGAATCGA
CAGATACCcattgaaggtacaatcatctgttgcttgttcgggatttaattattTTTctTtcAGGTTACCAAGGAc
ATGGGAAAGAAGAAGATCGAGAAGAGAAAtAAGCTGAAGCCaTTCCTCAAGGTCGTCtCCTACACtCAcTTGCTC
CCaACtCGtTACTCCGTCGATGTcGCCTTCGAtAAGaCcAACATcAACAAGGTTtgttggatttctaatatattt
cacctattattttttaatTTTCAGGAgGCaCTCAAGGCtCCgtCCAAGAAGaGAAAGGCCCTCGTCGAaGTCAAG
TCCAAGTTCGAGGAgcGtTACAAGACcGGaAAGAACAAGTGGTTCTTCACCAAatTgCGaTTCTAAaccgcattt
TTTCTTGTTTTGTTctgAATaAAATGTTgttACATAttccagtgagatcggtttcattagaacgcagaattatat
tcaatacgtgaatcggggCAcAAAATCTTAgTGTTTGCAAGcCGGcggcgagagacgagacgagtagagcccgtg
cgtcaaggcgaaacgagagagcgtggcgagagtggagtgcggcacggcgacacgcgtatcttggtctcgcagcga
ccagtgctacggtcgAGGGGAGGcCGgCGCGTTGCGTGTTAGGTGCGTGCGTCAGCtAGCGGTCCTTTTCGGTCA
AGCGATCAGCTTTATAtacACacacacccgccaccaccacatttCCACCAacagagaggcatccctgtgcgttgt
tgtgttgttgtttttttgtgatgtttataacttgacgccctcaatcgtcccaccgaaatacaaaaattgcatcga
acttctatcctcgctctAGCGTGtTCTtCTTGTTCTATTCGCTGGCtTCATCTGCGGCCTTGGTGGCACCTTTTC
GGCCGCCATGGCCTGCTGTTTATCCGAAGAGGCTCGcGAGCAGAAGCGAATAAAtCAaGAAATtGAGAAGCAgCT
tCAgCGtGACAAaaGaAATGCTCGaCGAGaaCTCAAacTtCTttTATTGGGTaagaaccggttcccttcaacaag
aagtcggtgtaatattcatttaacctgtagaatcctggaatcctgaaatcctgggagccaagctaaaatttgaag
aaaaaaaaacccccacagccttccacgttattccgaaactttatttatctattgtttactttttccatttacacc
ctctcgaattgcacctgccccttgtcgcccattcatcattctccttatcaccataatttccttatcagtcctcca
gttttcccccttcaacacctcgttatcaatcgcaattccgaacggttttcctttaaaatgacagttccagttcca
gtctctgaaaaaacctgtaaaaccaaatcaataaacagttccaagtgtgtgtgtgtgtgtgtgtaggagtgcgcg
tatgaaacagtctatttctctgcgtgtcgttccgtttttcgttcctatttggggggggggcctccaacccCCCTA
ATATGTCGAAAATGTGGggcgcgtcgtCGTtGTCGGGGGCATATATCCCCCGcCGGCCCCCGAAACCCcCttctt
cttcttcttCTTCTTCTTTCCCTtCCCTTCcCTTacacatatatCTATATatgtgtgtgtgaGTGTgtgtACGTA
TATAGCATTTGCATGGtAAGAGAGAGCGAGacgcgctggtggaTTGCCCtcacagcgcccccccctcccccttcc
ctgtcgcgtctgtgctgcgcgTATTGATCGgtggcagcagcagcagcagcagcggcaaaaagaaagaatgggggg
agtgagagatgaagaatacgacggggacgacacacacacacataggagtattggaaaagcagagagtgtgctccg
cgtgagtttgagtgtctctgagcgagagagcgcgagacgcagagaaccagagagaggggctgctgtgtgcgcgcg
cgatggaaaagagggaagagagagagggAGAGAgtggggaaagcCACAACCTAATCAGCGCAGcCAACCAaccaa
ccaaccaaccagcccagccaaccacggggagggctaggaagagcccagagaaagaaggatgggggtgaagagcag
cagcagaagcttggccagtcctccacccagccatagggaccgatggactaggagacgcaggcgtgggctcctctc
tctctctctctcggccacagagcaactaGATGAATTCACATACAAATGACTAATGGACATGAGTTGTctgtgtgt
atgtgtgTGtTGTaTGcAGCAGTGCAAATTGATTTCcaacccgcCCCAAATTTGTGTGaGGGCTTTAAAGgAGGA
gcAgATTGGcaAGAAAAagggcagacatgggctggaatcgggactgtgaaaaggaactggaacggatttggaaaa
aaaatttttggaaaaaattgaatttgcatgatctgtttgatgttagtttctcaacatgaaaaaaaattaaaaatt
aaaaggaaagtttaattcataaataaggaaaacagtaatcaaatgtagattttttaacattcagcgttctctgtc
aaaatatcgtgcgcctttaaagagtaccgtagttttttgatgtttcataagttttcaccagttttcttaaattta
ttgaaaaggtggttaattttttaactaacatcacgtggtgtcagagagtttcatttcggtttgatctacctagat
ctacaaaaaacgcgggaaaagagacgcagagttctcaactgatttcgtatggttacgaccgtgttgacgtcacat
atttttgggcgaaaaattcccgcattttttgtagatcaagctttaatgaaatagtatcaccacgtgtaacatcac
attttggaagaaaaatcaattcaaactcagcaaaaagttagtaactacagtaatttttaaaggcgaacccaccgt
attttcgaagttagcattcccaaaactattaaaaccacgttaaatcccattaaaaattatgttccaacaaaaaaa
tcctaaaaataaaaatgatgaaagatccaggtaagcgagaaaaattaaaaaccaggctctcaggtacagtaattg
aacaatatatatatatccaacaacccattttccaaaaaaaaaattcaaTTTTCAGGGACTGGAGAGTCCGGCAAg
TCaACgTTCATCAAgCAGATGCGAATtATcCACGGtCAgGgaTATTCggaaGAgGACAAgCGAGCACACATtCGA
cTtGTcTATCAGAAcGTGTTTATGGCCATACAGGTAGgaattaggaatctgaaaacctgtttttaaaattttgaa
ttttaactcatattttattacgaaaccgccagtagatgtttgacgcaacaaatatctcgtagcgaagtctacaga
aaagttgtaaattaccaccggaaactaatacgtagtgccagggctgtcccattacggtttgatctacaaaagtgc
tcgaatttttcgccctaaagaatttgacgtcagggacgttcttaatcatgctaaatcagttgagaactctgccgc
attttttgtagatcaacgtagatcaaaccgaaataagacactctgacaccatggtagtttcaaaaaatattttaa
aagtttctgtacacttcgctatgagatctttggcggttacataataaaattgattttttgagattaaaatactca
tttcgatggaaaaaaggggggtttttccatttaaaaaaatcgaccgaagccttaaaattcgaactattTTTTcCA
GTCtATGATACGAGCgATGGACACatTagatATAaAgTTtGGtaAcgAaTCAGAgGAGCTgCAGGAgAAGGCgGC
tGTgGTgCGGGAAGTgGATTTCGAGTCgGTgACGTCTTTcGAgGAACCcTACGTGTCGTaTATcAAAGAGCTATG
GGAGGATTCTGGTATTCAgGAATGTTAtGATAGGAGGcGAGAATAtCAgcTcACcGATTCaGCCAAATAGTGAGT
TTTagtggttttttgttgaaatattttacctctttctaaacctcgtttaacatcttcCAGCTAtCTcTCCGATCT
CCGAcGGCTgGCgGTgCCaGACTATCTgCCaACcGAGCAGGAcATtcTGCGtGTTCGTGTgCCAACCACtGGTAT
CATTGAaTATCCaTTTGAttTGGAgCAgATcATcTTTCGGTgagctttttaatttactaaaaattacattcaaaa
aacggaaaattgtgttttcCAGAATGGTgGACGTcGGaGGtCAGCGaTCAGAAAGGcGGAAGTGGATcCAcTGtT
TcGAaAAtGTcACcTCaATCATGTTCCTggtggcgctttccgagtatgatcaggtgttggtcgagtgtgacaacg
aggtgagctccctggagaaagtactaattacgaaaaaactatacggtattcgtatatatatataatgagctgaaa
acaatctctgatgcttttttcgtctcccaagagatacggagatacggagagggagatagtggctttaagcgaaaa
tatgcaatttagtcgccgactgtgcaccataattaggggccgaaaacaatctattcggcccggaaaatgtgcatt
tttcaaggggccggggcggatattaagctatttctcatttgcactatagagtaacagtgggataagcgtgtgatg
aagagccagtagaatattatagcatttattaagggccaagtggtttacgtatgataacgtaagataacagaataa
cggggatttggggatgagcaaaacacaggtgacaggtcaagaaatgatgattaatgagcgtcgcactcgccttat
atactgcccgacgagagagagtgagagacgcagagttgccaattccgcgggaagatgtgcaggcgggtctcgaca
cgacaggtaccgaaggcgccaattcaaacaggagtttctcccaacacgcgaattgttctcgtcgtagaaatcgtt
accgatttcgctcgttctttctgtaaattgtcagctagaactaaaatatgtgaagtgtagagtgataatccttac
aatagtgcaaaaaaaaaacaaactagaaatcaatcttgCAGAACCGAATGGAaGAaTCgAAAGCtcTgTTCCGaA
CGATCATCACgTAcCCaTGGTTCACcAACTCaTCgGTcATTCTaTTCCTGAAcAAGAAgGATcTgCTcGAgGAGA
AGATTCTgTACTCgCATCTcGCtGAcTACTTtCCCGAATATGAcGGTttgtagagtcttttattgagagacttta
tttgggcaaatttcacccacctaaattgttttctTTTCAGGACCcCcaCGCGAtCCgATcGCcGCccGcGAgTTt
attctcaAAATGTTtGTCGActTGAAtccggacGCCGACAAGATTATcTACTCtCATTTTACGTGCGCgACTGGT
atGTcTTTtctttgtttgctaggtggaaaatattcgagcacggggttctagccttcttcattgaattttcgcgct
ccattgacaatcgtgtctgccggataaagtcgtgtactccacacggataaataaattcagttttacaactagaat
tgagccgcgacacgcaacgcgccgtaaatctactccagatatgggcgagctaaaatggcccaaactcttccaggg
aagccagaactccgtgttcgagaaaagcacttatggtagccacgggttaccgattcggtgtcccatggacactta
gagttgctcatggcgaattactaaaaaattgtttaaaaatatctaaaattttcaaataaaagggacctctaTTTC
AGATACGGAAAAcATTCGGTTcGTGTTcGCCGCcGTCAAAGACACAATTCTaCAGCATAATCTGAAgGAGTACAA
cTTGGTGTAAgaagaaagtcgcatgtcggattggatgatgatgatgatgatccatctctctctCTcTCTCTCTCT
CAcTGGGTCGAGTGAGACaccaccacctaaaCCTAGGAAACATTTTCTTGTACTCCTTCTaatttttgttttttt
tttgcaaaaaacTTTCTCTCTCTgTctgTCTCTCTCTcCATCTCttccttattttcttattttctcattttcctc
cctaaaacaaatgctcctcccgaatattctttccatataagcacttttttcttctttttttggatgtgctttctg
atatagctaatgcaaaaagaaacaaaacttctctctctctctctctctctctctttctgtcctgtctatactCAT
TTATCATCACAAAAAGTCGGTTTTcacatccttccctacccatcaacctagTTTCCGGCatgcaaaaacaccacC
TAGTCtctctgtcattcacaaaaaaaatttttttttttgtctttttTTTTctcacAAAAAtcccCACaAcAAAcc
gccgcTTCTTTCgtttttttttgtcttgattcaaatttttattttttttacctttctaacAATtcTAACcACAaa
aaaaACacaTTTTtcgtgttggacatagttttttTTTCctcctcaacttcaatttctcccacccacatccacata
attcaaatattataacgttttttttgagttTTCACCATAttTTtTTCGAAAATTATCGAATGCTTtctccactCC
CCtCCCcaaacttcacccttaccctaaaaatcccgtttttcatatttttttcccatcaagctaacctcgaaatcc
tcccccccaccctatttttttccatttttcatcgatttttttttgtcatttttccttcttcttcttctcaaccga
aaaaaaaaccatcccccatcCACaCaCCATCCCCCcttcttcttccccattaTTGTATCGACTTTTTGCGATAGT
TTtTAATTTCATATTTATTTCTaTtaacaTTGATCTAATTTTATGTAAATGTTTTGTGGACAAAAagAAATGGTT
gAAAcTTTattaaaaaaacctcgttttccgtattttatttatgtatgattcgaatcatgattcaggaaaaaaagc
gcgcgcgaaaatcattgatttaaatctgcgggctggaaattcctcCGTAAATCgaCacaaagcgataTCGtGaCG
AgACCCgtccacTCTGCGTcTCtcgccgtcgcgttgTcTCTCagccaatttgacttgggtttgaaattatttttt
cataatttttcattttctcctgtttttaatcagttttttgtagaatttttcattttttcggtgaaaaatcaatga
ataaaccattttttaagtagaaaatcgcccttcctcaatttttgctcgaaaattgtcatttttttgccttttcca
gaccatctcacaaaaaatgggcatttttaatttttttggtaaaatgttcaataaataaacgattttctcaagatt
ttaggtagaaaatcgctcgttttcctcaatttttgcttgaaaattgtcattttttgctttTTcCAGAccaTCTca
cAAAAAATGGACgTcTCCCagCTGACaGAtGccGAACTaCGcGAtagccTtAaAagcCACGGggtttctgttggg
ccaattgtggcgacgacccgcaagctctacgagaagaagcttatcaagttatcagacggaagcattaacagtgag
gatttgaatttaaattatttattaatttctaaataacatttttaaagttttcgaacctctaatttccagatcaat
caaatctcaacgactctcaattcaacgaggattcattgatcatcagctcgtcaccgaagaaatcaccgccacaac
gagttttccagaacgtgtcagctgcaacagcggcagctactacctctcccgaatcggacagcgacgattgcgagg
agtcgatgcgatacttgacggaagaggaaatggccgccgatcgggcatcggctcgtcaagctcagagcaacaaag
gaggattcttgggaagcacggtgagtttttcgccctttttctggcaataaaaacttattttctattttccagatc
acattcacaattctcttcgtcttcatcgccgtcttcgcctacttcttgatcgagaacgccgagcagttgaagctc
gtggccgagacgaatccggaggatactatttaaattattttttaaatttctatttttttctttgactgttgaaat
cgctatttttacccctctccctcccccatcactctttttctttaaatcctttcaccccattttcatcacttcatt
tggataaacgctatgaatctctctctcagtttttacgagcccatcaactccagaagctaaccaaaatggtagggg
ggaaaggcgtggtccccccggctccgttgggaaatatgacgaatctgtagtttactgatgggggggggggtggta
taaaagcccgacacctcgactcggcgaaacttatttcaattgcctccgacaaaatgctccgccaccacagctgcg
ccctgctcatgctcatcctcgtattcgtggagggttcgtcgttttaatactatttttaggccaatttttaggcca
attttttttctaaaaattacttccgttttttttacagtttttgcaacacagtcgccgacgtttgaccgtcaggat
cgcgattaccggccacttcaggtagggaacaagacattttaaaaaaagttaaaaatattatacacacataaattg
CAGTTCGGcAAgCGAGATGGgTACCGTCCatTGCAgTTCGGaAAacGcGACTAtcggcctctcCAgTTCGGAAAG
CGaAGcagcggcagctctggaccagttGTgCTcGAgCCaATcTGGGAaTGGCAATAACCGaccccgtctaactat
ttttccctgctccgccatccaaaccaCCAaTCGAACGATTTATTTttttctaaTAaCCAACACAGAGACAGTCGC
CAATGAATCATTTTATTGTTgaagaatttcttttcttttttgcaattaaaatcaaaacaaaaaactttgaataaa
gctttttctcatttcggtttgatctacgtagatctacaaaaatgcgggagttgagacgcagagttctttgcagag
tgttttggcaaaaaattcccgcattttttgtagatcaaaccgtaatgggacagcctgacaacacgtgtttctgtg
ggtctcgccacgccggcaattaataactattttgcttcgtggtgagacctattgtggaatattctgggtctcgtc
gcgatggaagctactaacacaaacttgtaatttcgctttgaaaattctggaaaaaactctgagccgtgacgggac
ccagtctagattatctttttgcaaaccagtgtgcgcctttaaggagtactgtagttcaggggtgggcggtaaacg
atttttttccggcaaatcggcaaattgccggaattttaagtttccggcaaacccgcaagtagccggaaaaacaac
aattttccgaaaattttcggcaaattgtgattttgtttttattattttttggaaattttggaattttaatttcaa
atggcaaaattaaacgcatcctatgaattttcctacatctattttgaaaattaagcaaattttatgaaaatatcc
tttaaaaaacgggaaaaaattcaaaatgacacagttttaagtgtttccgtcttgtaaaaattcctctaaacattt
ccggcaaatctgatatccggcaaacggcaatttgccaaaaatgaaaatttccggcaaatcggcaaattgccgatt
tgtcgaatttgtcgacaaaaatttaggaaaacgtcaagaaagaggcatattaccgagatgagaaattctgcttca
aaaaatgctgaagccggtctcgaagcgacacattttcattaaatgcgaaaatatatgtgcgcctttaaagattac
tgtaattcgaaaattttcgttgctcacttgtttaaaaaaaacatgggttttgatattttaaatttggtttgtcca
aaaattttggtatttatttgaatagatttttctcgaaaataagaaaatgtgtgaactacagtaatcctcaaaggc
gcagaccgtactgaacatcatcgaatcccttatctatcagattcccagtacaccatgcacgcaacacgtggcggc
gggcaacacagagtatggtcaacatgttagagacgcagacagtcatataaatattattttgtttgttataggtgg
tggtgcccctattgtcttttctacaacttccaatttcctattatatagtttcagaaattcgttaaaaatggtctc
aaatgagcagctcgccgagcaattcgtcaaattgtatggtattgagccagaagttcgtgtcacgtgtccgggccg
tgttaatttgattggtacgttgttattggtcttgccacgatcgaaactttcgcagaaatatatgtttctctggaa
attttgctttactgtataaaaaatgtattaaaaataataaaaagcatttcgaaatatttccgcggttacggtagc
tcaaaattttgaagtttcaatcgtgccaggacccaaaaagtgttaaaagtcccgggtttttttcctatcagggtt
caggtatcagggacacgttgaaattatagattttctcctcaaacacctaaaattgtattttataaaataaaagat
aatttgaaatttgaaattttgactattacgggaacacaaaattctgagaatgcatattgcacaacatatttgacg
cgcaaaatatctcgtagcgaaaactacagtaagtctttaaattactactgtagcgtttgtgtcgatttagcggct
cattggtcatttttaaccgattttcagtactctatcgataaataaattatttatattcacctgagcccgtaaatc
gacacaagagcgctacagtagtcatttaaagagtagttttcgttgcgagatattttgcgcgtcaaatatgttgtg
caatacgcattctcagaattttgtgttcatgtaatacaaaaaattaaatcttctcctcggggagtacacgagcct
acatagatcgtcatggttaactgaccacagacttgcaaaaatcataggaacttgaaacaattgagagaaaaatga
cacttttttattttgaaaaatgaaagtttagttgcaaaactgctgccttaggtcttggcacgaatgaaattttat
cagctacacgtggtgccaggctgtcccattacggtttgatctacaaaaaaaagcgggaatttttttcccaa
  
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egl-30 locus Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.remanei, C.briggsae or C.brenneri.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

agtggtaagtatatttcttttaaacacgctcttaattacccaaaaatggtagaatatcaagtttcaaaaatgcag
ctttttctaattaaatacaaaaattaaactaataagttgagttttgataagtttcaggtttaaaggtggactacg
ctcagtggggaaattgctttaaaacacgcctaaagggccacaatggccgaatatcatgattaaaaaaattcaaaa
aaattatatagattttatatgattttttgaaaattggaaaaatctcagttttcaactaattcctatttgaacttc
tgccaatttatttgttcgatggagcgagcttccattattttaattaattaattttatttattcttgttatgtgac
tgatttttttcatttttctgtttttttatcggaaaatgaataaacaagacaaatgcgaaatgtttgtttaaagta
attgaaaattcgcgaattttaattcgtaaaactataaaatatactaatttcaggcttgtagtcgtcggaactcct
cagaatatcacagttttatgcattttcagttactttttagtgatcatttttcatttgtcttgtttatttctttca
ttttccaataaaagaccaaaaaaatgaagaaaatcagtgaaataatgagatgagatgaaataaaattatttaatt
aaaataatgtaagcgcgctccatcgaacaatttcaattggcggaaattcaaattgaaatttgggcaaaaactgag
attttttcaattttcaaaaaatcatataaaatttagaaaatttttttgaattttttaatattgatattcggtcat
tgtgaccccataggcatgttttaaagcaatttccccactgagcgtagtccacattttaaactgacaatttcgaat
tttccagtacttactttataaagcagataaagtatatatcctacactttttgatcgttttacaaatgtgctctag
ttcacacgtacagaaaaatctgttccctcaatggtgtttcactttttgatatcttcaccaagaatggtgttgaaa
tttgtgcttctacagctttgtgaagataaatttgacacaatggggcgaagtcatgactgaaattgttccagtttg
tgggtcaccgaatttgatcgaggagaagaagcaaaagaagcggaagtcaactgttgcggtggttatagagaagga
gaaggaaaaggaggaagatgctgcaaagtctccgatgagaaaaccgtctgaaacaccgaaagtgtctactccgaa
agctgctacaactcctgttgaagaaattaaacaatacgaaaacttccacgccccggtcaaaaagcgaattcaact
ggtctccctcgataacttatttttgaattattgaactccctgatgattattttctattatatacacacatataaa
ctttttcgatctcttaaaacagtttatttagattctaaaaacagtaaaaaattgacttgatccttacaacgggta
gGAGATCTTcgTcGAgTcgGCcGGCTTtGTcACGTATCCtAAgAACTTTTGCTCgCGaAGaATCCgTCTCATcAG
CATtaatcggcCGCCtCGGGTTTCcGTgCGcTTtTCGACAgtgtcaacgTTgAGCTTcTCTTGcAaTTTgTAcgG
GAAaTAGCAcggccgaaAactGTTTCtGTGCCAcGGGCAaTTCCATCGaATcGaTTGAAAtgtgAGcGaaTTGAA
ACgAAgcagtTGCTGCATCTGgAAAgaattaagggattgAAAttgAAAAAAActgcgaagaatgattctaacagc
aaaaactatcagtatttcaattgatttacgctaaaaacacaattttctgagcataaatttataaattcatcaaat
ttttaaacatttcagcaataaaaacctcaaaaatacattagAAAccagAAAAAtcaattTAAAAtaGAAATAAaa
tgcttgTGTcGATTTACGaGGagaaacaAtGTTTAAAGGCGCACGCaATTTCcgtttgGGGTCTCGCCgCGATat
gcCCtttCTCactagTTTTCtgCTgccaTCtcGtCgaGGCCTAAATTTTTTTTCGAATTTTTCGAcgATTTTTca
gcaaTTTTTGagTTTTTTCAGcATTTttatatattatttgaaagcccattttcttgtgaattgaatgactatatc
gtccatcgaaaatctttgttttccatgaaAATTTgtgTTTTAGATGACAAAACGCCGtGCgAGCAATAAAAAGCC
ttCGGGTTTGAACAAATCACTTGGtAATTCgCTtAGCAAcGATCGtgAGAAAACtAgGAAAAGTCAtCAACGtGC
aAAGTACGATGGAAACGACATtGAgAATCCaGCtTTCATGGAaCACGAAGTcAATCAtTACATCGAcTCgGTgAC
aGACGAaACtAGTTTgGAGGAGTTTtTgGCTAAAGCAGAACTtGCTGGAACtGAATTCACCGCcGAgAAGGAGCA
gTTCAAgATTATTGAaAAGTGAGTTtctgagcttaatttgaattttacatatcatttatttgtaggAACTCCGCt
ATTGTcGTCCCAACaaGgcTgGACTACCGTGCCAAtCTTGAcCTtCAAAAGGAgAAcGAGCAcCGtCTTCGgATT
CCaAGACGtCCAGCaAAGGAgCTcTGGGAGAACATGGAgGAttTgACtAagcTGGAaAACGAAGCaTTCCTTCAa
TGGAGGTCCGACCTgAGCGAGCTGCAAGAGGCACGCGgAAgTTTGAAAGACgATTAAtATTTtaTTCTTCAGGTG
GAcggacTGGTaCTGACtCCtTTCGAgcGaAATCCtGACATGTGGAGAGAgCTcTGGAGAGTTGTCGAGAAGAGC
GACATCATtGTtCAaATCGTgGACGCtcGAAAtCCatTgCTgTTCCGcAGtaAaGAttTGGAtGACTAcGTcAAG
GAAGTtGATCCcGCcAAgCAGATTCTTCTTctcGTCAAtAAGgcagatcTtCTgAAACCgGAaCAAcaGGCcAGc
TGGAgggaatacttcgaaaaggaaaatatcaaagtaattttctggtgagtgacgcgataaaatcaatattttcta
aatatattttttccaggtcggctatcgatgaagtcttagatccaatcgatgaagacgcagtagaaacatcaaatc
catcaacttccACAcATATGTTCGTaACgAACAAgGATGAgCTgATTGCgAAgTTCAAGGAaCTtGGtCACGTAT
CaGATGAgCCgTCAGCAAAgCCAGTcATGGTTGGAATGGTTGGcTATCCtAACGTTGGAAAaAGTTCtACgATCA
ACAAGCTgGCtGGtGGAAAGAAgGTtTCaGTATCaGCAACACCcGGAAAgACGAGACATTTCCAAACcATTCACA
TCGACAGcCAACTaTGcCTTTGTGATTGTCCcGGACTTGTcATGCCTTCTTTCtCtTttGGACGaAGCGAAATGT
TTtTaAAcggtaactcgtagTTttaaaATAatattttccaaattcgattcgattgcaggtattcttcccgTTGAT
CAaATGcGtGAcCAcTTcGGcCCAACgTCgcTtCTaCTcTCccGtGTTCCaGTTCATGTCATCGAgGCgAcaTAC
TCgATtATGCTgCCaGAGATGcAAAgTCCtTCtGCAATCAAcTTGCTtAAcTCgCTcGCgTTCATGAGAGGATTT
ATGGCgTCgTCgGGAATTCCgGATTGTTCcAGAGCcGCGAGgCTGATGTTCAAgGAtGTTGTcAGtGGaAAAtTG
ATtTGGGCAGCcGCaCCTCCcGGAGTtGAgCAaGAAGAGTTTGAcCGaaTcTCcTATCCAGAcAAGAAGAcTCGt
GAtATTGGtCGgGTgCAgATGGAaAAGCTTGCcAAGCTTCAgCTtCTcGAgGGTGATGAGttgAAgGGATCaCAa
TTtGACTCtCAACAcTTTGtcGGatCaATcGGAGTTGCTCATGTcaGAGATTCAAAAGCaTTgCCtCAAAcGTTA
GGaACcGTcaTtCCaACtGCTCCtaccGaAaaCAATGGaAAGAAgcattacAAgGGAAAGAAgGACAAATTGAGG
AGGATTTATAATGAATAAAGTCAcTCTTCTTGTTATTAcTTTCaaatgTTTTTactgTTcTACTGGTTTcCaccC
AGgctatatctcaattcttttgctcgtCTCtTatccTTtTaaTttctTCtattTTCtTTTTCAcTAATacTTTTT
TCAGGTAAATATGGGCAAGATTATGAAGCCTGGAAAGGTCGTCCTCGTCCTCaGAGGAAAgTAtGCTGGTCGCAA
GGCCGTCGTcGTCAAGCAaCAAGAcGAGGGAGTTTCgGACAGAACCTACCCACACGCCATCATtGCTGGAATCGA
CAGATACCCAtTgAAGGTacaatcatctgttgcttgttcgggatTTAaTTaTTTTTCtTTCAGGTTACCAAGGAC
ATGGGAAAGAAGAAGATCGAGAAGAGAAAtAAGCTGAAGCCATTCCTCAAGGTCGTCTCCTACACTCACTTGCTC
CCaACtCGtTACTCCGTCGATGTcGCCTTCGATAAGaCCAACATCAACAAGGTTtGTTggatttctaatatattt
cacctattATTtTTTAATTTTCAGGAGGCaCTCAAGGCtCCgtCCAAGAAGAGAAAGGCCCTCGTCGAAGTCAAG
TCCAAGTTCGAGGAGCGTTACAAGACCGGAAAGAACAAGTGGTTCTTCACCAAatTGCGATTCTAAaCCGCaTTT
TTTCTTGTTTTGTTCTgAATaAAATGTTGTTACATAttccagtgagatcggtttcattagaacgcagaattatat
tcaatacgTGAATCGGGGCACAAAATCTTAgTGTTTGCAAGCCGGcggcgagagacgagacgagtagagcccgtg
cgtcaaggcgaaAcgagagagcgtggcgagagtggagtgcggcacggcgaCACGCGTATCTtGGTCTCGCAGCGA
ccagTgCTAcggTCGAGGGGAGGCCGGCGCGTTGCGTGTTAGGTGCGTGCGTCAGCTAGCGGTCCTTTTCGGTCA
AGCGATCAGCTTTATATaCACACacacCCGCCACCACCACATTTCCACCAACAgagaggcatcccTGTGCGttGt
tGTgtTgtTgTTTTTTTGTGATGTTTATAACTTGACGCCCTcaatcgtcccACCGAAatacaaaaattgcatcga
acttctatccTCGCTCTAGCGTGtTCTtCTTGTTCTATTCGCTGGCtTCATCTGCGGCCTTGGTGGCACCTTTTC
GGCCGCCATGGCCTGCTGTTTATCCGAAGAGGCTCGCGAGCAGAAGCGAATAAATCAAGAAATtGAGAAGCAGCT
TCAGCGTGACAAAAGAAATGCTCGACGAGAACTCAAAcTtCTtTTATTGGGTAAGAaccggttcccttcaacaag
aagtcggtgtaatattcatttaacctgtagaatcctggaatcctgaaatcctgggagccaagctaaaatttgaag
aaaaaaaaacccccacagccttccacgttattccgaaactttatttatctattgtttactttttccatttacacc
ctctcgaattgcacctgccccttgtcgcccattcatcattctccttatcaccataatttccttatcagtcctcca
gttttcccccttcaacacctcgttatcaatcgcaattccgaacggttttcctttaaaatgacagttccagttcca
gtctctgaaaaaacctgtaaaaccaAAtCAATAAACAGTTCCAagtgtgtgtgtgtgtgtgtgtaggagtgcgcg
tatgaaacagtctattTCTCTGCgtgtcgttccgtttttcgttcctatttggggggggggcctccaacCCCCCTA
ATATGTCGAAAATGTGGGGCGCGTCGTCGTtGTCGGGGGCATATATCCCCCGCCGGCCCCCGAAACCCCCTTCTT
CtTCttctTCTTCTTCTTTCCCTTCCCTTCCCTTACACATATATCTATATatgtgtgtgtgaGTGTGTGTACGTA
TATAGCATTTGCATGGTAAGAGAGAGCGAGacGcGcTGGTGGATTGCCCTCAcaGCGCCCCCCcctccCCCTTcc
ctgtcgcgtctgTGcTGcGCGTATTGATCGGtggcagcagcagcagcagcagcggcaaaaagaaagaatgggggg
agtgagagatgaagaatacgacggggacgacacacacacacataggagtattggaaaagcagagagtgtgctccg
CGTGAGTtTGAGTGTctcTGAgcGAGAgAGcgcgagacgcaGAgAAccagaGAGAGgggctgctgtgtgCGCGCG
cgatgGAAAAgagggaaGAGAGAGAGggAGAGAGtggggaaAGCCACAACCTAATCAGCGCAGCCAACCAACCAA
CCAACCAAccagcccagccaaccacggggaGGGCTAGgaAGAGCCCAgagaaagaaggatgggggtgaagagcag
cagcagaagcttggccagtcctcCACcCAGCCATAGGGAcCGAtgGActagGAGACGCAGgcgtgggctcctctc
tctctctctctCGGCcaCAGAGCAACTAGATGAATTCACATACAAATGACTAATGGACATGAGTTGTcTGTGTgt
atgtGTGTGTTGTATGCAGCAGTGCAAATTGATTTCCAACCCGCCCCAAATTTGTGTGaGGGCTTTAAAGGAGGA
GCAGATTGGcAAGAAAAAGggcagacatgggctggaatcgggaCTGTgAAAaGGAACTGGAACggatttggaaaa
aaaatttttggaaaaaattgaatttgcatgatctgtttgatgttagtttctcaacatgaaaaaaaattaaaaatt
aaaaggaaagtttaattcataaataaggaaaacagtaatcaaatgtagattttttaacattcagcgttctctgtc
aaaatatcgtgcgcctttaaagagtaccgtagttttttgatgtttcataagttttcaccagttttcttaaattta
ttgaaaaggtggttaattttttaactaacatcacgtggtgtcagagagtttcatttcggtttgatctacctagat
ctacaaaaaacgcgggaaaagagacgcagagttctcaactgatttcgtatggttacgaccgtgttgacgtcacat
atttttgggcgaaaaattcccgcattttttgtagatcaagctttaatgaaatagtatcaccacgtgtaacatcac
attttggaagaaaaatcaattcaaactcagcaaaaagttagtaactacagtaatttttaaaggcgaacccaccgt
attttcgaagttagcattcccaaaactattaaaaccacgttaaatcccattaaaaattatgttccaacaaaaaaa
tcctaaaaataaaaatgatgaaagatccaggtaagcgagaaaaattaaaaaccaggctctcaggtacagtaattg
aacaatatatatatatccaacaacccattttccaaaaaaaaaaTTCaaTTTTCAGGGACTGGAGAGTCCGGCAAg
TCAACGTTCATCAAgCAGATGCGAATtATCCACGGtCAGGGATATTCGGAaGAgGACAAgCGAGCACACATtCGA
cTtGTcTATCAGAACGTGTTTATGGCCATACAGGTAGGaaTTaggaatctgaaaacctgtttttaaaattttgaa
ttttaactcatattttattacgaaaccgccagtagatgtttgacgcaacaaatatctcgtagcgaagtctacaga
aaagttgtaaattaccaccggaaactaatacgtagtgccagggctgtcccattacggtttgatctacaaaagtgc
tcgaatttttcgccctaaagaatttgacgtcagggacgttcttaatcatgctaaatcagttgagaactctgccgc
attttttgtagatcaacgtagatcaaaccgaaataagacactctgacaccatggtagtttcaaaaaatattttaa
aagtttctgtacacttcgctatgagatctttggcggttacataataaaattgattttttgagattaaaatactca
tttcgatggaaaaaaggggggtttttccatttaaaaaaatcgaccgaagccttaaaattcgaactatTTTTTcCA
GTCtATGATACGAGCGATGGACACAtTagatATAaAGTTtGGtaAcgAATCAGAgGAGCTgCAGGAGAAGGCgGC
TGTgGTGCGGGAAGTGGATTTCGAGTCgGTGACGTCTTTCGAgGAACCCTACGTGTCGTaTATCAAAGAGCTATG
GGAGGATTCTGGTATTCAgGAATGTTAtGATAGGAGGcGAGAATATCAGCTcACcGATTCAGCCAAATAGTGAGT
TTTagtggTTTTTtgttGAAATattttacctctttctaaacctcgtttaacatcTTcCAGCTATCTcTCCGATCT
CCGACGGCTgGCgGTGCCaGACTATCTgCCAACcGAGCAGGACATtCTGCGTGTTCGTGTGCCAACCACtGGTAT
CATTGAaTATCCaTTTGAtTTGGAgCAGATCATcTTTCGGTGAGcTTTTtaatttactaaaaattacattcaaaa
AACggaaaattgtgttTTCCAGAATGGTgGACGTcGGAGGTCAGCGATCAGAAAGGCGGAAGTGGATcCACTGTT
TCGAAAATGTcACcTCaATCATGTTCCTgGTgGCgCTtTCcGAgTAtGATCAGGTGtTgGTCGAGTGTGAcAAcG
AGgtgagctccctggagaaagtactaattacgaaaaaactatacggtattcgtatatatatataatgagctgaaa
acaatctctgatgcttttttcgtctcccaagagatacggagatacggagagggagatagtggctttaagcgaaaa
tatgcaatttagtcgccgactgtgcaccataattaggggccgaaaacaatctattcggcccggaaaatgtgcatt
tttcaaggggccggggcggatattaagctatttctcatttgcactatagagtaacagtgggataagcgtgtgatg
aagagccagtagaatattatagcatttattaagggccaagtggtttacgtatgataacgtaagataacagaataa
cggggatttggggatgagcaaaacacaggtgacaggtcaagaaatgatgattaatgagcgtcgcactcgccttat
atactgcccgacgagagagagtgagagacgcagagttgccaattccgcgggaagatgtgcaggcgggtctcgaca
cgacaggtaccgaaggcgccaattcaaacaggagtttctcccaacacgcgaattgttctcgtcgtagaaatcgtt
accgatttcgctcgttctttctgtaaattgtcagctagaactaaaatatgtgaagtgtagagtgataatccttac
aatagtgcaaaaaaaaaacaaactagaaatcaatcTTgCAGAACCGAATGGAaGAATCgAAAGCtCTGTTCCGAA
CGATCATCACGTAcCCATGGTTCACCAACTCaTCgGTCATTCTaTTCCTGAACAAGAAgGATCTgCTcGAGGAGA
AGATTCTgTACTCgCATCTcGCtGACTACTTtCCCGAATATGACGGTttgtagagtcttttattgagagacttta
tttgggcaaatttcacccacctaaattgttTTCTTTTCAGGACCcCCACGCGATCCGATcGCcGCCcGcGAGTTt
ATtcTcAAAATGTTtGTCGActTGAATCCgGAcGCCGACAAGATTATCTACTCTCATTTTACGTGCGCGACTGGT
ATGTcTTTTCTtTGtttgctaggtggaaaatattcgagcacggggttctagccttcttcattgaattttcgcgct
ccattgacaatcgtgtctgccggataaagtcgtgtactccacacggataaataaattcagttttacaactagaat
tgagccgcgacacgcaacgcgccgtaaatctactccagatatgggcgagctaaaatggcccaaactcttccaggg
aagccagaactccgtgttcgagaaaagcacttatggtagccacgggttaccgattcggtgtcccatggacactta
gagttgctcatggcgaattactaaaaaattgtttaaaaatatcTAAaaTTTTCAAAtAAAAgggACCTCtATTTC
AGATACGGAAAAcATTCGGTTCGTGTTcGCCGCCGTCAAAGACACAATTCTACAGCATAATCTGAAGGAGTACAA
CTTGGTGTAAGAaGAAAgtcgcatgtcGGATTGGATGATGAtgatgatgatccatcTCTCTCTCTCTCTCTCTCT
CACTGGGTCGAGTGAGACACCACCAcctaaaCCTAGGAAACATTTTCTTGTACTCCTTCTaATTTTTGTTTTtTT
TTtgcaaaaaaCTTTCTCTCTCTGTctGTCTCTCTCTCCATCTCTtccttaTTTTCttattttctcattttcctc
cctaaaacaaatgctcctcccgaatattctttccatataagcactttTtTCTTCTTTTTTtggatgtgctttctg
atatagctaatgcaaaaagaaacaaaacttctctcTCTCTCTCTCTCTCTCTcTTTCTGTCCTGtctatactCAT
TTATCATCACAAAAAGTCGGTTTTcacatccttccctacCCATCaaCCTAGTTTCCGGCaTgcAAAAAcaccacC
TAGTCTcTCTGTCATTCAcaaaaaaaaTTTTTTTTTTTGtcTttTTTTTTCTCACAAAAATcccCACAACAAACC
GCcGCTTCTTTCGtttTTttttgtcttgattcaaATTTttattttttttacctTTctaacAATTCTAACCACAAA
AAAaACACATTTTTCGTGTTGgaCATAGtTTTTTTTTCctcctcaacttcaattTcTCCCAcCCACATCCACATA
ATTCAaATATtatAAcgttTTTTTTGAGtTTTCACCATATTTTTTTCGAAAATTATCGAATGCTTtctccacTCC
CCTCCCCaAACttcacccttaccctaAAAATCCCGTTTTTcatattttTTTccCATCAAgCTAACCTCGAAATCC
TcccccccaccctaTTTTtttccaTTTTTCATCGATTTTTttttGTCatttttccttcttcttcttcTCAACCGA
AAAaaaaaccatcccCCATCCACACACCATCCCCCCttCTtCTTCcccaTTaTTGTATCGACTTTTTGCGATAGT
TTTTAATTTCATATTTATTTCTATTAACATTGATCTAATTTTATGTAAATGTTTTGTGGACAAAAAGAAATGGTT
GAAAcTTTattAAAAaaacctcgttttccgtattttatttatgtatgattcgaatcatgattcaggaaaaaaagc
gcgcgcgaaaatcattgatttaaatctgcgggctggaAATTccTCCGTAAATCgACACAaagcgatATCGtGaCG
AGACCCgtccaCTCTGCGTCTCTCgccgtcgcGTTGTCTCTCagccaatttgacttgggtttgaaattaTTTTTT
cataaTTTTtcattttctcctgtttttaatcagttttttgtagaatttttcATTTTTTCggtgaaaaatcaatga
ataaaccattttttaagtagaaaatcgcccttcctcaatttttgctcgaaaattgtcatttttttgccttttcca
gaccatctcacaaaaaatgggcatttttaatttttttggtaaaatgttcaataaataaacgattttctcaagatt
ttaggtagaaaatcgctcgttttcctcaatttttgcttgaaaatTgtCATTTtttgctTTTTcCAGACCATCTCA
cAAAAAATGGACGTCTCCCAGCTGACAGATGCcGAACTaCGCGAtAgccTTAAAAGCCACGGggtttctgttGGG
CCAATtgtggcgacgacccgcaagctctacgagaagaagcttatcaagttatcagacggaagcattaacagtgag
gatttgaatttaaattatttattaatttctaaataacatttttaaagttttcgaacctctaatttcCAGATCaAT
CAAatctCAAcgactctcaattcaacgaggattcattgatcatcagctcgtcaccgaagaaatcaccgccacaac
gagttttccagaacgtgtcagctgcaacagcggcagctactacctctcccgaatcggacagcGAcGATTGcGAgG
AGTCGATGCGaTAcTTGACgGAAGAGGAAATGGCcGCCGATCGGGCatcggctcgtcaagctcagagcaacaaag
gaggattcttgggaagcacggtgagtttttcgccctttttctggcaataaaaacttattttctattttccagatc
acattcacaattctcttcgtcttcatcgccgtcttcgcctacttcttgatcgagaacgccgagcagttgaagctc
gtggccgagacgaatccggaggatactatttaaattattttttaaatttctatttttttctttgactgttgaaat
cgctatttttacccctctccctcccccatcactctttttctttaaatcctttcaccccattttcatcacttcatt
tggataaacgctatgaatctctctctcagtTTTTAcgaGCCCATCAACTCCAGAAGctaaccaaaatggtagggg
ggaaAGGcgtggtccccccggctccgttgggaaatATGACGAATCtgtagtttactgatgggGGgggGGGtGGTA
TAAAAGcCcGACACcTCGacTCGgcgAAACTTATTTCAATTGCCtCCGacAAAATGCTCCGCcaccACAGCTGCG
cCcTGCTcATgctcaTCCTCGTATTcgtggagggttcgtcgttttaatactatttttaggccaatttttaggcca
atTTTTTTTctaaaaattacttccgttttttttacagtttttgCaACAcagtcgccgacgTTtGAcCGTCAGGAT
CGcGAtTAcCGgCCACTTCAGGTAgggaacaagacattttaaaaaaagttaaaaatattatacacacataaattg
CAGTTCGGCAAgCGAGATGGgTACCGTCCATTGCAgTTCGGAAAACGCGACTAtCGgcctcTcCAgTTCGGAAAG
CGAAGCagcGGcagctcTGGaccAGTtGTGCTCGAgCCaATcTGGGAATGGCAATAACCGAccccgtctaactat
ttttccctgctccgccatccaaaccaCCAaTCGAACGATTTATTTTTTTctaATAACCAACACAGAGACAGTCGC
CAATGAATCATTTTATTGTTGAagaatttcttttcttttttgcaattaaaatcaaaacaaaaaactttgaataaa
gctttttctcatttcggtttgatctacgtagatctacaaaaatgcgggagttgagacgcagagttctttgcagag
tgttttggcaaaaaattcccgcattttttgtagatcaaaccgtaatgggacagcctgacaacacgtgtttctgtg
ggtctcgccacgccggcaattaataactattttgcttcgtggtgagacctattgtggaatattctgggtctcgtc
gcgatggaagctactaacacaaacttgtaatttcgctttgaaaattctggaaaaaactctgagccgtgacgggac
ccagtctagattatctttttgcaaaccagtgtgcgcctttaaggagtactgtagttcaggggtgggcggtaaacg
atttttttccggcaaatcggcaaattgccggaattttaagtttccggcaaacccgcaagtagccggaaaaacaac
aattttccgaaaattttcggcaaattgtgattttgtttttattattttttggaaattttggaattttaatttcaa
atggcaaaattaaacgcatcctatgaattttcctacatctattttgaaaattaagcaaattttatgaaaatatcc
tttaaaaaacgggaaaaaattcaaaatgacacagttttaagtgtttccgtcttgtaaaaattcctctaaacattt
ccggcaaatctgatatccggcaaacggcaatttgccaaaaatgaaaatttccggcaaatcggcaaattgccgatt
tgtcgaatttgtcgacaaaaatttaggaaaacgtcaagaaagaggcatattaccgagatgagaaattctgcttca
aaaaatgctgaagccggtctcgaagcgacacattttcattaaatgcgaaaatatatgtgcgcctttaaagattac
tgtaattcgaaaattttcgttgctcacttgtttaaaaaaaacatgggttttgatattttaaatttggtttgtcca
aaaattttggtatttatttgaatagatttttctcgaaaataagaaaatgtgtgaactacagtaatcctcaaaggc
gcagaccgtactgaacatcatcgaatcccttatctatcagattcccagtacaccatgcacgcaacacgtggcggc
gggcaacacagagtatggtcaacatgttagagacgcagacagtcatataaatattattttgtttgttataggtgg
tggtgcccctattgtcttttctacaacttccaatttcctattatatagtttcagaaattcgttaaaaatggtctc
aaatgagcagctcgccgagcaattcgtcaaattgtatggtattgagccagaagttcgtgtcacgtgtccgggccg
tgttaatttgattggtacgttgttattggtcttgccacgatcgaaactttcgcagaaatatatgtttctctggaa
attttgctttactgtataaaaaatgtattaaaaataataaaaagcatttcgaaatatttccgcggttacggtagc
tcaaaattttgaagtttcaatcgtgccaggacccaaaaagtgttaaaagtcccgggtttttttcctatcagggtt
caggtatcagggacacgttgaaattatagattttctcctcaaacacctaaaattgtattttataaaataaaagat
aatttgaaatttgaaattttgactattacgggaacacaaaattctgagaatgcatattgcacaacatatttgacg
cgcaaaatatctcgtagcgaaaactacagtaagtctttaaattactactgtagcgtttgtgtcgatttagcggct
cattggtcatttttaaccgattttcagtactctatcgataaataaattatttatattcacctgagcccgtaaatc
gacacaagagcgctacagtagtcatttaaagagtagttttcgttgcgagatattttgcgcgtcaaatatgttgtg
caatacgcattctcagaattttgtgttcatgtaatacaaaaaattaaatcttctcctcggggagtacacgagcct
acatagatcgtcatggttaactgaccacagacttgcaaaaatcataggaacttgaaacaattgagagaaaaatga
cacttttttattttgaaaaatgaaagtttagttgcaaaactgctgccttaggtcttggcacgaatgaaattttat
cagctacacgtggtgccaggctgtcccattacggtttgatctacaaaaaaaagcgggaatttttttcccaaa
  75
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2175
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2925
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3225
3300
3375
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3600
3675
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4125
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4275
4350
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5175
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5325
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6375
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7125
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7350
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7800
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8175
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8325
8400
8475
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9000
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9225
9300
9375
9450
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9600
9675
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9825
9900
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10050
10125
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10275
10350
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10500
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11700
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12000
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12375
12450
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12600
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12900
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13350
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13575
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13800
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14475
14550
14625
14700
14775
14850
14925
15000
15075
15150
15225
15300
15375
15450
15525

Enhanced BLAT Score Card

 (Back to Top)


 Nematode EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: egl-30 locus
        

     Reference Genome: C.elegans
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              C.elegans
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            15522
            1
            15522 0 1866 
  
           
            2664
            135
            15273 0 
                 0 /
                 798
               
  
           
            2368
            134
            15261 0 
                 0 /
                 502
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.remanei
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5402
            1488
            13221 1 33 
  
           
            164
            2009
            10558 0 
                 36 /
                 85
               
  
           
            105
            10094
            10560 0 
                 30 /
                 32
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.briggsae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4567
            1983
            13222 0  
  
           
            239
            754
            10803 0 
                 151 /
                 88
               
  
           
            179
            5776
            15193 0 
                 166 /
                 13
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.brenneri
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            3213
            4926
            13220 0  
  
           
            2508
            6329
            13229 1 
                 256 /
                 2252
               
  
           
            2368
            1502
            5047 2 
                 2257 /
                 111
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              P.pacificus
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            201
            4180
            4717 0  
  
           
            221
            4196
            8325 0 
                 0 /
                 125
               
  
           
            183
            5918
            13058 0 
                 87 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
C.elegans egl-30 locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the C.elegans egl-30 locus reference sequence that are conserved in the C.remanei, C.briggsae and C.brenneri orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

C.elegans egl-30 locus Genomic EvoPrint (Back to Top)

egl-30 locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.remanei, C.briggsae or C.brenneri.Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Enhanced BLAT Score Card (Back to Top)

Nematode EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile
