Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
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Conserved Sequence Block Name:
 


  

    
	

	  C.elegans ric-4 locus Genomic EvoPrint
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Black capital letters represent bases in the C.elegans ric-4 locus reference sequence that are conserved in the C.remanei  and C.briggsae orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

    


(ORF orientation in 3' --> 5' direction)



 
gttccaaaacattaatattttaaataaagttgtcttatcccactatgtataagttcattagctaaaaaaaatcac
cagttatgcagtttccgaaactacaatcatcattaagattgctagtataaaactccctgtggaagaattttcatc
aagtacggaatgttttttttctatcccatagtaaaattgaaaatttggcattctgtacccactttttagaaacac
ttgatcatttagtaaaataatcttatataagatcaggcggcaattgccgaacggcagcgcggcaattgacgaacg
gcaattctacaaaatgagatggttgggcatgttcccccgatatttttcattaaaatttgatgatacaatatagaa
aaatatttgctttatttgaaaataatttttatttgatttttaaataccggggggggggggggagtgctaaaaaat
tgcccgaaagttgaaaattgtcgatgaaaattgccgtcaatttttggcaattttcaactttcagacagtttttga
acactttctcggttgtttcaagtcaaataaaagtcattttgagatagcgcaaatatttttctatattgtatcatt
aaattgtaatgaaaaatatcgggggaatatgcccaaccgtctcattttgtagaattggcgttcggtaattgccgc
gcacccctgtataagatgttgttgccaacacatttttgagtgtccctcggtactctccggatacttgcttctttg
caaactttcaaactagtttacaccattttggtaagcttcttgttacaactagagatcctaccctcaacttgaaag
cgtaccgtatttggaagtggccatcaaatgccgagaagtaaattcggattttgaatgaatgttaactttattttg
tttcaacttttaacaaagaaagaaacgtttagagtgtatcaacttttaatgtgataatttatgaatcaaaaattg
tacctcatatataactattatatttgaaagagctatcggatgctcctccatttcaattctttttgacTCCTCgTC
TTtTTCTGTCAATCCATCATTtggTAGTCGTTGACCTCGTTTCCTaTCTCCATGACGTCTTtTcCCGAgGTTGCC
gccgctCCGAATCGTGtgCtCGATCTcgtttcacgagctttccgtcagcgTCAaATGCACtactCTTCTAATCCt
tcaagGCTAGTTgtgcaaggaAAAAAGAAGgAGaACGTCTTCtacttcttCTCAGaGGCTCTAAGACgtcgaaga
aGaaGAAAGTATAAGAtGaaaGAaAAGaAagaaacGACGAAGTGAgccagaaagggaagCCCGCAcccACGtATC
GATtggctctcatAGAGAGAAAgAGAGtctctgttTTCTCtcTTTCCGcaagcataCACACATGGGCTCTCCGGA
GaatgCATACACAaattcAGCAtACggcactgccATATCtaacgttaGCTcAATCCTGaAAAAAaacatagaatc
tgaggggAAAAGTATTGCGAAACccgaatcctttgctccatttttccacgttttttTTGCTctgaatgCTCTTtG
TcTcCACGTGcCATCcGTCCATTTGTCCATTCaattcactgaaaaccccccaAAAATATCCGATTTCttccactt
tccactctttattCCAACCTTTTTTCTTgTTTTTTgttaactattcttttgtctttctatttaattatcatccat
acttttctatttgtgtctcgttctagcacaatcatcatctttgctttttttttacagaattccatttccgtgaac
attcacagttggttgcacaaaatttaaaatggtccccgtactctaatatgagtcagatgtatttttgatctgtga
agttaaaatgttcatattcttgtttaaagctgttagtttttactgtcatttgtatgagaattatctgtaatgtct
attatcaaaaatcaaaatttattatcaattacctattatcaataacttttgacaagttctcaattctgaagcgcg
tcattatctttcacattgctccagaattttgctggaaatatgttgaaacattttagaaaaatttattttagttga
ccaaaacgtaacttttcagtatatattcacggttcacaaatttttttcaatgtgagaaagttgatatagttaagc
atagtccaattttacactccaattgcatttaaaatatcaaaaatctaaaaatgttctgttgactaaaaataataa
cgtaatttgaaccttcatgagcaaagcttcggctatttttggaagagattttgtttgcaaaagttttgttttcca
ataaaaatgttctagttattgaaatttcttaagcagtcaaaaaagatttaaaactatttttcatatgttagtctg
tcattttctgaacaaaacgctattatatgtggtatcgatttaatattttttgtttttcagttcttggagttgacg
ctttttcaaactcaaaaccgactgaaatcataattttggataaacgtttgaaagtgattaatcataacataagca
ttctttcctacaatcgttgaaaaataaatgtttaaaattcaatctctctacattacttgaaatacattaattata
tacattcacagtatagtgcatttttcctcacgtcactctaaataaaaactcgtcattttcaatttccgcgctttc
ggtcgttcaaaataatatattcagctcaaattgtcattctatccattccgattagcatcatcttagttcatgttt
tcttaattttgatctacttttctcgaattgcttctttttttgctccacccagctcaacaattcttcacgtcatca
tgattcttcttccgtttctcagcaattttcattctttccgacgatttatttcatttccttctgcatctcttccca
acttTGTTtTTCTattTTTTtCtggttttcactacttttcaattcatcaattgtgaggttgaaacatctaaaaac
ggaaacaaggTGAAGGtcAgAtGAAAAAaaaaagtttttaatgtttttccatatattattttctaattattatta
tagttcctgaaaatttcaaatctttctcgtctcaaatttaattatgtttcacctgttctttgttctaacatctac
tgaaacttaataattaatccggaattatgttagtgacgtcatacagtattataactagataaaaagtatatagtt
gcagaatttaaaccttcagacaaaatatccacttttcaatttttctgaatctgaggaacacattgtttaaaaatt
actgctgatgtgatctctaatagtattgaaatagaaaggttctcaaaaataaatattgcaaatatactaatagca
aaaatacgtttacaattaaaaactgattgtgactaattgtgagattgttttcaaacttttccaaaatgccataaa
taattgtaaaaatgggattcagcattttataattttttttaacttctattggttgtatcatatttttagaatcaa
taaaaagacgtcagcagtgaacagaaccacaaatcgtgatttttagatcgcccacgtttccttccttttctcagc
tttttttcattcatttttgtgctgttctgacttattctttttttgttcagtctttcccaaatttttgtgcccaat
ctctaatcccttgggtctCTGTTatcgTCAAAAGTGACATCTTtTctttcgtttttttgTCTTCTttggctcAAT
TTCAgAAATGTTCcattTTCTgtcattctcatctcgtttcgtttttcttctgttcaattcctattctgtgccgtt
ttttcaagagcaaaaacctgtcagctaaatatttttttcttcattttttttaaataaaattctgaAagTTTTtTg
ttgTTTTCtgtccatttttgtgcGtCctTTTTcttcgTGCCATCCATTCAAAcaaCGCTTATTTTATGAATAATT
GCCTTTTTcgCTGAGCTCTTTTcgTTTCgtcttTCTTgtTTcTgTTGCTTcTTCcgagtgagccggacataaaat
tgggtagcggttgttgtttcgtcggtgttttgcaaaaaattgaagagtgaagcagccaaacaaggaagttttcga
attttttaaaacttttctgcaaaatacaattaagccaaattgagtaagaaatactaattaggctcacttgttacg
aaaggaacgtttgagtttctttggaaagttttaatttcagcggtgaatatttgtttaaaaaagtacctttttcga
aaaaaatatgcttgaatttttttaataaatattaatatccacatatcataaaacgttttttctttaccgtcaaaa
gcggtaagcactcaatttcgacaaagcagaattttggaaatcgacggaaaaaaaattcttccagttttatatttt
gattgctcaatcgtttgcaagtctcaaaattactcaaaaagtcaaaatttttgaagtttcgacaatttatacttt
gactgaaaattttaaaagatgacaccccactctttaattgaacctactcatctaatgaacgcgtacttttttcgt
cttttgtagcatgccatttgaagttttttcgagagtgaacttttgtctacactgaagtaatttcaaactttgact
cttactcgtttcgcgcttgaatctgaaatgagacacgaagacgttgGAACAGGTGCCTTCTCATTTCCcaTTTtt
CACTTGTTTTTCaccattttttcatcttAAAAACACATTAACGGAcgaaGGAAAtacgggataaggcgagAGtGt
GAaTGAGAAAAATACAAATTTATGAGTAGATTAGCATAATCCGtGGgccgCTCTCACTTATATTaTAATTccTTT
TTTtgctcaaagatacggcttgacacatactttctcacttatttcaacTTcTTTTTcatcatcattgctttTTTT
CTTTCagttattttttaaatagaaaaaaaatcataaaaTTTatTTTTCAGGTTcTGTGAaCggtcagACAAcaag
CAAtaATGtCAGGAGATGATGATaTTCCaGAGGGTCTTGAGGCtATCAACCTCAAaATGAATGCAACaACTGATG
AtGTGAGTcAATGGGaAAtgagaaagattttcagaaaataataGAATTttTGATTACCTtGAtGatcattagatt
cagatgggtgtgggaagttctcgggggaaaaagtctagcgtatgcacagtgatacaaagagctttacaagaggaa
gtatattaagttaaaaataataataatacatatttaaccgaaaaatcaatgatttcaaacagtatttttgatgct
gaaattagaatattgcttttaaatccttgaaaagtgcaaaataccaaaataccgcaacgaaaaaacacagtgaag
aatttatattctataccagccgatgaccgcgcctccggcgcggccaacgactggcggagtttaaaatgtataaca
catagatgtcctttcaatcattcaaaaatgtatcattaaaaaagttgaaacttcatcgattaaatcgcattttct
tcttccatggtattcgattcagaaaattcaaagagacagttagaatgttctgatttttctacactcaaaattata
aaactgcgttacgtgtacgccaaaatagtccccgcctttttctcgttcactcacggggaaaaggcaaaaagcagt
accccaggtaatatcagccgccgacatcattcgaggtccgcgcaccacactatttttctcactgttggcgtggcg
agctgtccccctcccccgaaaaaattccacagagttacagttttttcaataagttaataactttccttaactgga
gaagtctgaataattaactactaatagtaagttctttgaatatagatgtgacgaaacaaataaaaactcctacag
ttataggaggttgtagagcatttcaggacttttttgaactttccagatgattctagaacattctagaattttctt
gaaacttccagaaggtgctgaaacaaaaaattgattccagaaccaaaATTTGAATTTCCCGCCAAATgTTTTcct
cagaAAATTTGAATTTCCCGTCAAAATctTTTTcacTGaAAATTTGAATTTCCCGCCAAAttgttTTTTcaCTGa
AAATTTGAAtTTCCCGCCAAAATTTTTTcactgaAAATTTGAATTTCCCGCCAAAATTTTTTcactgAAAATTTG
AATTTCCCGCCAAAATTTTTTcactgAAAATTTGAATTTCCCGCCAAAATTTTTTTcacaaaAAATTTGAATTTC
CCGCCAAtATTTTTTTCataGAAAATTTGAaTTTCCCGCCAAAATTTTTTcacTGAAaaTTTGAATTTCCCGCCA
AAATTTTTTcactgAAAATTTGAAtTTCCCGCCAAtATTTTTTTcatagaaaaaTTGAAcTTCCCGCCAAAATgT
TTTcactgaAAATTTGAAtTTCCCGCCAAAATTTTTTcactgAAAATTTGAAtTTCCCGCCAAAATTTTTTcacT
GAAAATTTGAAtTTCCCGCCAAAATTTTTTcacTGAAAATTTGAAtTTCCCGCCAAAATTTTTTcacTGAAaaTT
TGAATTTCCCGCCAAAATTTTTTcactgAAAATTTGAAtTTCCCGCCAAAATTTTTTcAActgAaAATTTGAATT
TCCCGCCAAAATttttTTcacaaAAAATTTGAATTTCCcgCCAAtATTTTTTTCatagaAaaTTTGAAtTTCCCG
CCAAAATTTTTTcactgaaaaTTTGAAtTTCCCGCCAAAATTTTTTCActgAAAATTTGAATTTCCCGCCAAT