Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
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Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  C.elegans unc-112 locus Genomic EvoPrint
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      Black capital letters represent bases in the C.elegans unc-112 locus reference sequence that are conserved in the C.briggsae, C.brenneri  and C.remanei orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 5' --> 3' direction)


 aatcctcttcagtgacatcccagcgactcgattttctggaactttgtgacgtcacaggtctctggagctcaccca
tgcttccagaatgggtggtgctcctggaaaaaataggcattacccaattgtcgcatttttcaaaattaaaacaca
aaaagctccgtcactttaatggctttttgtatcgttttttcttaagttatgcgaaattttccgtcttttttcggc
attcttacaaatattcaatttccagggattagaaggaggatcacccgtaataaaaggtagaatgtaccattttct
ctccatatgctcttttggagttggttccggcgcttctgtgtgaacgtgtggatttactagaagaattggagagga
atccgaaaattgagatgattcagcttttttcgtaacttgtatcgactctccattgataattcccgtttcttcctt
cttaacataactggaatgaaaaaaagaattcttcttatgcatagtttcctttagttgaagtgtgagaagtttaat
ggattttcctgaaactgagctaatcggcgatgattctcttgacatttccagaggtggaggtggcggtggtggcaa
tggtgagaacacgcgatttctggaatgaatatttgcttgaatagttttcttcatttttcgcttttagaggtctcg
aaacgaccaattctataatgtgtgcgtctttaggaatctacagtaatccttaaaggcgcacacacttttgcatta
aaaggggagtatcggctctgatttggttatttatacggtaatataggcacatttagatgctgtaatgcaaaaaaa
aaaacacagaatcgatactcctccgttgaaaaatctgttgtttcgagacccggatccgtgtttttacggcaaaaa
tcgctctgaacaacaatacaaacccgctctctgggacaatttctccttcttccacgttctccatcgctgcctgaa
cttctacttcatttgctgcttggctggtttctcttccagattcatcaggcatcctgaattttagtatttaaaatt
ttcgaaaaaaaaaaattaaaaaccctgcaagaagtttcgtcatctgttccttcaaatacagctcatagtctttgg
tttttcgatccaaactgtgtacattcaacggactcttgtctgtcttcgaatatttcatcaaaaataactgtcgat
tcttgttcagaaacacattgacaccagcgtcgtggagcctgaatttaaaaaaattaaaatattcttaagtttcga
aagttgttaaaggtggagaaaatcggagaagtttttttaaactttgatactaatttcagttttttaacaagacga
tttcaagctggaatttgaaatcagggaaaatattcagcattttttcacatggatattcgtaataaggagccaatt
tttttccagttttcgatccttcacaccgtcaaataattataattaaaacaaaccattctagtacattctcttcaa
ctgatacacttgtcacatacaaaacattgcgtaatgttattgcattcatcagacgatcatcattcaatacaatat
tcgatttcatcactcgactagtgaaatccgaaattaattttcctagatcatcgtcaatctcctcgacagtcttct
ctgatccaaactcctgcttgaacacgtggcacagatgtttcgtgtgtcgtggcatcatcggaatgatttttgatt
gattgataatcgatttaagtagtttctcttgttcttcgttaaatggtgtttttgatggttcaggatcgatttgtg
aagtgctgcttgaagatgcggaaatctgaaaataacttttgtttgattcaaactttcaaatctcgactttgacaa
tctcatttatttataaagcttgtactgtcagaaacgaaaagttttgccagacggtgagaaaaaaaaccgacaatg
ttcgataaaaaaatgtctgaaagcacggggagtcagaatgtcttattttgatttgatcttcataaaatgcgggag
aagagacgcagacttctcatcttatttcgcctggttaagagcgtgctgacgtcacaatttttttggaaaactatt
cccgcactttttgtagatcagaattaaataagacagcctaacaccacgtgtgaaagctgttacaaatgcaaagtg
ttgtgaaaatttcgccgcaaaagcggcttatgcatgcaacaaggtaccatattcaaaatgtctagaagaccgttc
tgcttttccaattgagcttttcagacatttttaatcgaaaattttcgtttttctgtgaaataccaacacttggcg
tttttcgtggggatttcggagtaaaacccaattgttctgcaattttcttaaattcggcacatttcaacatacaga
gagttccggcggtttccaataaccatcattctgaatatactttctcttccattcccgtcgacaattctcagaatc
ctccaagtgcacagtacattttaatgaacaattcaaaggaaagaaatcgtcattaaaatcgatagtaatctcatg
tccatatggaatgaagtctcttgctttgataattatatggaattctgtattgtttctttcataactaagataact
attcggaaagcagcttcttcggacaaatcttccaggattatttccagtccctcgagcatccaaacagacacatcc
gtatgtgaatagaaagttcacatttcgagaatcttcttgaagttcatgatgaaatgccaataatcctcgaatcct
cacaattggctcgtccggctcgatgtctagatttgagacgagagctctgttgattaaataggatttcgaaatttc
gatactgcgacacttttttccgaaacttcgaacttctgtgatggggaatagtgtcggaagcagctcctcgacgtt
tttcgaaatgattgttgatgatttgtttttcgggttcattataatgcgatctgaataaatttcaaattaattttg
gcaatgaaaatatggattaaaatagaaataagcctgcaagcatagaggaaaccagattttcggttttttttttca
gaaaaatgacaaaaattaagcgcaggaatgaaaatagatgaaaaaaaaccgtttcttcgaacatttgtagaattt
gtgttggttttttttaaaaggataatgcgaaattttggagttatatgcacttcactgaaaaacggatagttctaa
tgggaaggaaaattcttattcgtgaagttattgggcccattttcttcaatttgctcgatgatttaagaggcactg
aagaaaatgcgaggaaattattttttttaattgtctgactctacggatttttttttaatatccactattttttcg
ggattttttttttgataattctctgttttgaacaagattttataacacagaaacataggaaaatgccgaacttta
gctctgaaaactattaaaagttatttttatcatgaagtacaatttttcacggagaaacccgacacaaataaaagt
tttacgtgatgttcaacgtttaatataaattttcaaacaaataaatcgaatattggccaaaaaaactaaagaaaa
cagagtaaaaagttcaaaaataagattgcaattgttgaaaaacaatgaaaacaattgctcgtaaagttatggcga
agtacgcaaaagcctctgcgtacttcgcaatctaccgtagtcatcaattaatttttttgtcagtcgcgcgcgaca
acatgtcgtgccgtgccgagaaatactgcataggatataaaaacaaagaaacgttaagtgatagctgaaaatatc
agtttgatttaaatggctacaaggttattccttgacacaaaaaatatcccgtagggaaaactacagtaattcttt
aacatctttaaatttcgatttaaatttcggaaacattgatttatcgattgaatattgaaattaagccgaaaatta
aaaactaatacgaggaaacgaagaaaaatgaatatcgatgtcactattcgaaaagaaaatcatttcaaaaatccg
taaatcgactaaagcgctacagtagtcattttaagtattaatatagttctcgctacgagatattttgcgcactat
gcattctcagagttttgtgttcccgtatacacagtgctcaaattcttcgtccaaaaaatttctgagcttatttca
agtttgatccaactcttgttaatgtcttatataactttaaaacgattcaaaaaacgattaggtcaaaaagtttga
tttttaacgccgccaaaaaaatttgcatacgctttataagcaacttttgtaccaagtttatatttcttttgagcc
agacttggacaagaagttagcattttgtgtcagcgcatattgaaatttcactaccatttctaatatactgtaaag
gatagttacttttgtggaaaatctgaacttttatcaattgcaccataaaagacgaggttaccaagtgttcacagt
atgaacttcacacgtggtgttagagtgtcccattgatctacgtagttcacattgttcacaaatgttcacattatc
cagatattctaattcagaaactagtatacacctttctccatttcattgcacttctccattcatacccaactaccc
gtgatatcctatacttttactctctctctctcatgtccaatgtcccttcagaagctgcttcctggcatcttcctc
ctccttcttctgccaaatctttctgccagccgggggacgggactctttgtgtaatgttgtCTTCTTCTTTTCctt
catctacagcagCATCGCCTACTGTCATTcCtTCCCATTCCCGcgtagCCGCCTGcCGAGTGTCCTTCAActCTc
cGTCTCTtctacaactgttCACTCTCTctcgctctctcattgcatttTGGAACatacagatagggagtcagaGAG
AtagagagtgaGAAAagaagcggAGAGAcggtgttgcTgTGAGTCAgagacgaagagTGTGTACTGCTCcggCCG
TCCGTTTGTTCGTCCGCatCGGCagTCttttctctcattctctcattcttcaatgttctctagcctcttttttcg
tttattttattctgtatacacgttcctctctacctgatattctcccacacatagctttttTATTGATTTGTTgat
tgttgttaagcggttttttttgttttctattctatctaccgtggacggagaaaatacactgtttctataatttgc
taatctttccaacaactaaaatatctcagtggttctacctaaatcacttcaAAcATggcaCAtCTtGTtGAAGGA
aCcTCgaTtATTGATGGaAaaTGGCAaTTgCCaATtTTGGTCACcGAttTGAAtATtCAaaGGTgAGgatttaaa
attatatatttagaaaatattaactttcaatagtactgcatgtttagcagttgttcttaaataactgcaattgca
ggaagttatagaaaaagattcaatgcacattttctgaattcaagtcattttgtcagaataagtgataattgagtt
attctcggattgaggttaagcctaaaccaatcctaggcccaagcctaagtctaagtctacgactaactataagaa
taagcctaagtctacgccgaagcctagcctaagtttaagcttaagcttaagtttaagccttaccctaaaccctag
cctaaattttcagaagattccggttaaatttttttccaaacatgaatgagacattttcaaactcagagtcttcca
atttccaataaatgtatttatttcttccagaagcatctctgtccttggaaatcttaatgtgggaggactcatgct
cgaacttgttagcgaatgcggtgagtttttttttcgaatcttatcacctcggtcaagatctcaaagatctcaata
gaccatgatttctctcttttctactcaatataatctgttagatatatctgccactgtgtgCGCCTACGCGTTTGT
TACAACGAAAaGAtacgtggtgtgtgcaccattacgaaatgatgttcaatatcagtaaaaattgaaggcatggga
aaatgttgaaatctgctggaaaaaaatgttctggaaagatagggaacacttttggaaacacatcgtaacggagcc
cttgaagagtgcgccaagtgaaaaatttctcgtacaattctttcaagtttgctgaaaattcgtattttgaataaa
acagtttaattaaaaagttaatttttgagagatcttcacgaaattttttagggactgtgagctccgaaatagttg
acaagaagtcctctatacattttgaaacatcatagaaactatgcggaacctaTCaAATATTtATgggctcttctc
atctcctaccAGTTGctcttctctttctTCTTTTTcttttcatcctaacccctgttaaTGTTGACTATTCgAGTg
cacgcGTGCGCATCTACATAAGCTGATTGTTTcggatgggacattcgctgttgGGTACATAAAgtttagaggctt
tccttgcagagatataaGAgCACACAATGATAGGGGGTCCCagGAGAgagtatcaaaacttgagaagcaactggc
attcatcatgaccaagagcagaaagggcgcataggagaggcgcataaaaacgttttggaattaagttttcgcgcg
atttttagaacttgcagaagctgaagggatgaagattttctgcattagggtataacaatttgtgtgctcaatgtg
tttaatttccaagttcaaaatgtaatcatttgggcttcagctgaacaaacaatttacaaaacagctgtattgaaa
caagaatctaAAAAACTccaaAtatttcTATTTTTccagatgttgaacGaGATTGGTCtGAtCATGCtCTgTGGT
GGCCgGAGAAgcggcGATGGCTtCAaCAtACTCGaTCgACtCTtGACCAgAATGGaATtACaGCTGAAACaCAat
TGGAgTTCACaCCaATGCATAAaGAAgcaagaattcagttaccagatATGCAAATGATtGATGCgaGAGTTGATT
TCTCgGTaAAtTCATTcAAAGCaACaAAGAAaTTgTGccGtGAttTgGGtATtCGaTATTCaGAgGAaTTGTCtT
TGAAGAGGTaagtaggaattgggaagtttttgatgttttatttttaatttaaataagaatggagttgtgaaattc
cttagttggttgaacgaggattgaagatccttgggaatcttaagcaactagggaaaatctatgcctgatcgaaat
cctgccccaaaagtttgagcaaggtcaaaagttaactactaccgagcatgtgaaataacccaataattcaaaatc
atataatttaaaatattaCAGATAtATtCCaCCaGAgGAtCTtCGaCGTGGAACaTCtGAcGCcGAcAAcaTgAa
cGGtCCAcTcTCaATGCGTCCAGGAGAaGAATCAgTtGGaCCaATGACtCTcCGtAAAGCtgCTCCAATcTTtGC
tTCtCAATCgAATCTtGAtatgCGccgtCGTGGtcaatcacccgcgctctccCAATCTGGaCAcATtTTCAATGC
tCAcGAaATGGGAACtCTtcctcGcCACggaacattgccacgtggtGTcAGTCCATCgCCaGGAGCaTAtAAcGA
TACgATGAGAAGAACACCaATtATGCCaAGcATcAGTTTtAGTGAaGGAcTtGAAAATGAgCAaTTtGATGATGC
TCTtaTtCAtTCaCCaAGACTTGCTCCAagccgtGATACtCCagtatTtaGACCtCAgAAcTATgtggaaaaagc
tgcgATtAAtaGaGGATGGcTtGATTCtAGcaGATCaCTtATGGAaCAAGGAATttttGAAGGAGAtATtatttt
actacgattcaAATTtATGAAtTTCTTtGAtTTGAATCCAAAaTATGATCCAGTgAGAATtAATCAAcTtTAcGA
gCAAGCaAAATGGAGcattttacTTGATGAATtcGATCAcACaGAgGAAGAaGCcACaCTaTTTGCTGCtCTTCA
AcTtCAaGCaACcCTgCAAAGAGAtTCTCCtGAACCtGAAGAaAATAAtaAAGATGAtGTGGATaTTCTTtTGGA
cGAgCTTGAgCAaAAcCTTGAcgcaGCTgCtcttAACAGAcgatcagatcttacaCAAgTTCCcGAGtTagCaGA
tTatTTGAAaTAtATGAAACCAAAgAAatTgGCaGCATTCAAaGGATTtAAacggGCatTcTTCTCgTTCCGTGA
ctTaTATtTatcatatcatcaaAGcTCctCagatgtcaactcagctCCAcTtggacacTTcTCattgAAgGGATG
tGAAGTtAGTCagGATGTtTCaGTtggacagcagaagTAtCAtATCAAaTTgTTAcTTCCAACTGCtGAAGGAAT
GaTtGAcTTCATTTTGAAaTGcGATtCcGAgcatCAaTATGCcAggTGGATGGCTGCgTGTCGgTTaGCaTCcAG
AGGgaagtcaATGGCTGATTCgTCATatCAAcagGAgGTgGAgagcatcaaaaacttgctcaagatgcaaagtgg
taagttgttgattttacaatttaataagtgataatgaaattattttcttcgaatgaaacaatttttcaggtaatG
GaAaCGAAAAcGGAAAcagcaACACAgCtTCgcGaaaagccgccgctgtaaaactaccaAAtGATTTCAAtgTtG
AtGAgTAcATATCgTCgAAATAcgtacgacgagcacgcagcAAgcaACaaAtTCAaCAgcGAGTATCAGATGCtC
ATGGAAATGTtcgAcaaCTCACgGCaACcGAAGCgAAActtcaatatatccgagcaTGGCAAGCACTtcCcGAAC
AcGGAATTCAtTATTTcATTGTaaGaTTCCGAAatGCtAGAAAgGCgGAatTGGTgGCtGTtGCtgTgAATaGac
TtGCaAAaTTgAATATGGATAAtGGAGAaAGTcTGAAGACaTGGaGgTTtgCaAATATGAAGAAgTGGCATGTCA
AcTGGGAaATtcgacatctcaaggttagtttttgatgaataaaatatttaagatctggacatgatcggaaatcga
aaaattgcaaaatgttgagaacgttttcgagacctattcatctaagtttcttgtaacaactttctgattgttaat
ctattttgtgatgtcttgaaattacgttttcatctcaaaatctttcctaatatgtatatctaaacacaaagaaca
attggctttcaaaaaatctttgtattgtttcaaaaattataatattgcgtttttgattcaattgttgttttctat
ccataagtctattcgccgtaacttactaaaaaattcaggtctttggtaatttaaaatctaaatcagataatgttc
tcaaagaccgaaactttttcggtaaacttggtgctgacaggaaggtaggcagacttcatgcctatttgcctacat
gccagcgttgcaccttgagcgttttagaaataaatttttaaaatctgttttgtgcctacataaaaggcttagata
aacccgaaaataaccgagaacaaactttttgaaattaattactttttttctttgagtatactattttatcatcct
atctccccaaTTTcCAGATTCAATTCGAAGAtGAgGAtATcGAATTCAAgCCacTtTCcGCtGATTGcAAAGTcG
TtCAcgagttcATcggtGGATAcATTTTCcTgTCAATGcGAAGcAAaGAACAttctCAaAatCTTgAtGAAGAAC
TTTTCCAcaAACTTACaGGAGGATGGGCttagatatttaaatttctataatcttttgcaaaccaaagaattttaa
ttttaggctccaattccatctttttcgtttcaaaatttcaatatatatatttgttttctttcatttttcttgttt
ctcatttccccccttcccctcttccaaataatttttcgttttAATAagACaAgTATACCGGATCgaaaaAAAGTT
TTATGTGCCTTTTCATATCTatggattaataataattgtatgagaaaaattgaaaaatattataaaaattgaata
ataaaaactgatgaataaacatttaaaatcttcttccgcgttcctcgagcttttcgaatttttgttgattgctga
tttctagtcttccaacgtttcgttcaacttcaatcagcaacTGaTCtCGcTCtTtttccagtTTTTCaAATTCTC
CCAtcAcaATATCaTTgAgTTCcTtGTAtTttTCaACTTCTTTcCtCATATTctcaacgtTTCgCATatctCGCt
ggaataataatcaggaaattatagtcattttccatcttttctggtagtaggcaaacgtaggtacaaggcaggcag
gcactgttctgctatctagctacctacctaactacctaggaatccttaatctgttctattcaaccatataaaatc
aatagtacaaaacatatcggcaatataaatttgatagaaaaaaagcaaataagtttgtatcccgttatttaaaaa
tttgttttcaaacggattgaaatcatgtgaaaacatgttcaagaagtatcaagaaatttgaaacaaaattttcaa
gcaacagcaaaaaatatctgaatgtagtcttcgcccataaatttgttttttcacgatttagaatcgaattgtttc
ttatttttcaaactagttttgtacgttttttttaaagttaaacaatttgtcagagcaaatcaagcaactttcacg
aatgatacgtacatcccttttcttacctgaaaattcctcttgtaatcctgaagcctcgcgatttctttgctcatc
tcatcaatgtttgcttgattttggccgagtaggacggcttgatccttgagtttctcgcgactatcaatgagatcc
gctgatattgaatcacgtagatcacggagatttgaaacttcgctctggaatggtgaagatggtttttatgaagaa
ttaatactttaataaaaattagttgaaaaaattgatcttatgattcaaatatcgttataaacagggggtttttat
tttgctttaaaaatatccaaaatagactcaaattcagaaatacgacagaataaatacgatgaaaatagaggaaaa
tttcaaatattaatttttagtgtgatttgacaattttggtttttaattccctccaaaacgagaagccacgcccgc
tttcgaaccaaccagaatcttcgaacgttacaaactttatctgattagttcaaacgtgggcggagcgagtcgttg
attggtcgcagttctcgctgtggaggaaattcaaatcatatattttaactattttgagattttttttctgttgtg
gtatttcagaatgttagattttttaaatgcaaaatctaaaatatcgaatattcagagttcctACCTGcAAGAAaT
CAATTTTtCCtTGCATCATgGCaGTtTGCTCacTaTTtccaGAtTCaATTGTcCTTATcTGtTCCATATGTTTCA
AtCCaATtTCcTCAATtTCaATtTCTCTTTCTTCTTTCATcGCtTgCATTTGTGTCTCcTGTTCcTCTTTCATTC
GtTGCTCCAAaTGcACAATTGCATAtTTcAAATCACTtTGaGCtTCtAacTTcTCttTTTCaAgcTCcGCaATGA
ATGttactagaAgATCATCaGATTGTCTtaAgATaTTcGCTGCtTTCTCTtTtGTCAatTCtTCCAttGTCTGaC
ATTCaACACTTTCtagaccaCCacTTGGaGcaATTGcTTCtGAcTGtGTTCCaGCATTTCtATgCAtTTTtGCAT
GAAAtACcAaACTtCGaATTcTTTGTTGtAatttctggatatgagTTGCTTGaTgtgTcTTCataTCaAACAtac
ttttctctacgtctcttgttctctctCtTTCttCtcctaatCCATTtTCAGCtATtCTCCAgAAtTGTTGAATtC
TtCCTCTTTCcTGTTGAGCtGCATTCAgTTCcAcTCtagtttttgTCAatTCtcCACTCAacTTaTCaGCtCGAT
CtTTCAggCGgTCttTtgtAatTtgaattgcgtttaattttttctcaacttcagctatctttcgggaatctgcat
tctgattctggattggctcaacaacttggactttctttttggcagcagatcctattgcaggttttcgacgggaag
ctgcattggtcgataatgtagactaaaattgttacaaattttttgataatatagtaattttaatagatttttgct
tttgctttaacagctaaaattacaagaaacacaatccgtaGAAAActgttggtcgaccaaaAAAATTacgatgAa
AActGAAAcAAAAAGAAcTCCGTCGAaCCGGATTCGAACCAGtGACCTAAGGATAtCTGcaaACTCTACAGTCCT
CCGCTCTACCAACTGAGCTATCGACGGCAtgttttcggtcgatgccgctgacacacacaaaactgaagaatgaga
gaaaacgcgcgcggaaagatggaagaccggttgccgacagttttccgttaagaggtgacggaaaaagtgtatacc
cacaaaaactgcgtatattccggttatttttcaagtgttttcagcggtattttgaaaattaagcagcagaaaaaa
ctacatgcgcctttaaattgaagtactgtagagaaaacaaattgcaagcctaaaaacgaaaaaaaaacatttatt
tcgaatatcccttttaatACATACCCTgAtAGCTTTgGgtTTCtTCATaAcTCgcTTGTTTTGaatattagaaga
cgtatcacgcgaagtccctgccGttTTCATAATtAATaggagtgagcacagactgcaaagagagcccggaacaca
gaaagagctcagtaaagctgctttcaatttctcaagggcagttggaaagagttggcatggtaacggaTGtCaAtt
tgagCAcGCATCAAcaGATTTGCgTGCGCGGAAAGCGGATTtttcaagagaataagcatatgttcataaaacgat
tatcgaaaaattTTTAtttttagAAataAAATgaGaGATtAGAcagcaaggtttggtgggattggaacaatttca
tcttcatcttcttcttccggattccaccaacgaacatccaacttgcgtccttcgaaatcttcattgacaggatcc
cagaggttataattgaaatttggacgtggaggtggattgaatggcttttcctgaaacatgaaaagatattaaact
catctccaactcatgtataaaccggttctggaatgatgcagcaaacagcactggccaagatcaggaaacatgcca
actcgaataagattgcaatcatgtttcgtataaactaaaactgtttaatttccctcgagtatctaaactgttcaa
atgtgcttcttcaaaagttcacgtttgcaaaaaaaaacattgatgaaattaattacggaacTTTatTTGGGTTCG
ATAGACAGgaAAACAAtGAaTAAAACTGTgGAGGGGCTTttggGGAGATCtTCtCGTAACAAATGATAAATTAaa
taggATgTTTAGTCGACCTCCTCCATgCGGGAAGCaTCCTCcTCAGCTCCcTCAATCTTGGCCTCaGCgGTGCAc
GAtGaTGGaacAGCaGAaTCttcaattTCgTCATCTCCgATATCGAGACCAAGCTTGATCATTCTgTAGATgCGG
GAaGCGTGaGATTGTGGCTCcTCaAGGGAGAATCCgGAagcgAGaAGaGCaGTcTCGAAaAGAAGAACAACcAAa
TCCTTaacggTCTTgTCattcttatcgacctcgacacgatcacgaagtgtcctgaaatagcaaaaacgtttgtga
atgttcattttaaaatagtttttgggtaACTTACTTCATGATaGCGTGgTCTGGGTTGATtTCgAGaTGcTTCTT
GGCgGCCATGTATCCCATagtaGAggaaTCACGAAGAGCtTGAGCtTTCATGATgCGCTCCATGTTaGCGGACCA
TCCGTAcTCgGAaGTgACaATGCAGCATGGgGAaGAgACaAGACGGTTaGAaactccaACCTTCTCaAcCTTCTT
CTCCAAaATgTCCTTGATGACCTTGCAaAGGTTtTCGTAgGCaACCTTGTCcTCtTCGAACTTCTTCTTCTCcTC
CTCgGTtTCTGGGAGCTCGAGTCCTTCCTTgGTGACgGAgACaAGcTTCTTtCCaTCaTACTCCTTGAGtTGtTG
GACGCAGTACTCATCaATTGGGTCgCACATGTAGAGgACtTCgAATCCgCGGCTCTTaacACGCTCgACGAAaGC
tGAAGCaGcaaCaACaTCCTTGGAcTCTCCgGTGATGTAGTAGATtTGaGTtTGGTTCTCCTTCATGCGGGAaAC
gTAtTCCTTGAGGGAAGTTGGCTCaTCTCCaGCgGAggTaGaGTAGCGAAGGAAaTCGGaaAGCTTCTTGCGGTT
aGTaGAgTCCTCGTGGATTCCgAGcTTgAGaTTCTTTCCGAAtTGCTCGTAGAAcTTcTTGAAGTTGTCtTtgTC
CTCgGCaAcCTCGTCGAtaAGCTCCATGCACTTCTTgACAAGaTTCTTaCGGATgACCTTCAAGATCTTGGATTG
cTGgAGCATTTCACGaGAgATGTTaAGTGGAAGATCCTCAGAaTCGACgACTCCctTGATGAAGTTaAGGTAtTC
TGGCATGAGCTCtTCgCAGTTCTCCATGATGAAGACACGaCGAACGTAGAGCTTGATgGAGTTCTTGCTCTTCTT
GTTCTCGAAgAGATCaAATGGAGCTCTTTGTGGgaCGAAGAGAAGAGCACGGAAtTCaAGTTGTCCCTCAACgGA
GAAaTGCTTGACgGCaAGATGaTCtTCCCAGTCATTgGACAAGCTCTGAAAttaatggaattattgccataaaat
aattaaaactaaaaaTACCTTGTAGAACTCaGCaTAtTCtTCGTTGGAGATATCGTCTGGGTTTCTGGTCCAGAT
TGGCTTGGTCTTgTTaAGCTCtTCgTCtTCGAAGTACTTCTCCTTGATtTTCTTgGTCTTCTTCTTgtcagcgtc
gtcagcgacgTTCTCgaccTCTCCcTCCTTCTTCTCCTCaTCCTTaGcCTCgACaGCCTCCTCatcttcaacCTC
CTTCTC
  
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unc-112 locus Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.briggsae, C.brenneri or C.remanei.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

aatcctcttcagtgacatcccagcgactcgattttctggaactttgtgacgtcacaggtctctggagctcaccca
tgcttccagaatgggtggtgctcctggaaaaaataggcattacccaattgtcgcatttttcaaaattaaaacaca
aaaagctccgtcactttaatggctttttgtatcgttttttcttaagttatgcgaaattttccgtcttttttcggc
attcttacaaatattcaatttccagggattagaaggaggatcacccgtaataaaaggtagaatgtaccattttct
ctccatatgctcttttggagttggttccggcgcttctgtgtgaacgtgtggatttactagaagaattggagagga
atccgaaaattgagatgattcagcttttttcgtaacttgtatcgactctccattgataattcccgtttcttcctt
cttaacataactggaatgaaaaaaagaattcttcttatgcatagtttcctttagttgaagtgtgagaagtttaat
ggattttcctgaaactgagctaatcggcgatgattctcttgacatttccagaggtggaggtggcggtggtggcaa
tggtgagaacacgcgatttctggaatgaatatttgcttgaatagttttcttcatttttcgcttttagaggtctcg
aaacgaccaattctataatgtgtgcgtctttaggaatctacagtaatccttaaaggcgcacacacttttgcatta
aaaggggagtatcggctctgatttggttatttatacggtaatataggcacatttagatgctgtaatgcaaaaaaa
aaaacacagaatcgatactcctccgttgaaaaatctgttgtttcgagacccggatccgtgtttttacggcaaaaa
tcgctctgaacaacaatacaaacccgctctctgggacaatttctccttcttccacgttctccatcgctgcctgaa
cttctacttcatttgctgcttggctggtttctcttccagattcatcaggcatcctgaattttagtatttaaaatt
ttcgaaaaaaaaaaattaaaaaccctgcaagaagtttcgtcatctgttccttcaaatacagctcatagtctttgg
tttttcgatccaaactgtgtacattcaacggactcttgtctgtcttcgaatatttcatcaaaaataactgtcgat
tcttgttcagaaacacattgacaccagcgtcgtggagcctgaatttaaaaaaattaaaatattcttaagtttcga
aagttgttaaaggtggagaaaatcggagaagtttttttaaactttgatactaatttcagttttttaacaagacga
tttcaagctggaatttgaaatcagggaaaatattcagcattttttcacatggatattcgtaataaggagccaatt
tttttccagttttcgatccttcacaccgtcaaataattataattaaaacaaaccattctagtacattctcttcaa
ctgatacacttgtcacatacaaaacattgcgtaatgttattgcattcatcagacgatcatcattcaatacaatat
tcgatttcatcactcgactagtgaaatccgaaattaattttcctagatcatcgtcaatctcctcgacagtcttct
ctgatccaaactcctgcttgaacacgtggcacagatgtttcgtgtgtcgtggcatcatcggaatgatttttgatt
gattgataatcgatttaagtagtttctcttgttcttcgttaaatggtgtttttgatggttcaggatcgatttgtg
aagtgctgcttgaagatgcggaaatctgaaaataacttttgtttgattcaaactttcaaatctcgactttgacaa
tctcatttatttataaagcttgtactgtcagaaacgaaaagttttgccagacggtgagaaaaaaaaccgacaatg
ttcgataaaaaaatgtctgaaagcacggggagtcagaatgtcttattttgatttgatcttcataaaatgcgggag
aagagacgcagacttctcatcttatttcgcctggttaagagcgtgctgacgtcacaatttttttggaaaactatt
cccgcactttttgtagatcagaattaaataagacagcctaacaccacgtgtgaaagctgttacaaatgcaaagtg
ttgtgaaaatttcgccgcaaaagcggcttatgcatgcaacaaggtaccatattcaaaatgtctagaagaccgttc
tgcttttccaattgagcttttcagacatttttaatcgaaaattttcgtttttctgtgaaataccaacacttggcg
tttttcgtggggatttcggagtaaaacccaattgttctgcaattttcttaaattcggcacatttcaacatacaga
gagttccggcggtttccaataaccatcattctgaatatactttctcttccattcccgtcgacaattctcagaatc
ctccaagtgcacagtacattttaatgaacaattcaaaggaaagaaatcgtcattaaaatcgatagtaatctcatg
tccatatggaatgaagtctcttgctttgataattatatggaattctgtattgtttctttcataactaagataact
attcggaaagcagcttcttcggacaaatcttccaggattatttccagtccctcgagcatccaaacagacacatcc
gtatgtgaatagaaagttcacatttcgagaatcttcttgaagttcatgatgaaatgccaataatcctcgaatcct
cacaattggctcgtccggctcgatgtctagatttgagacgagagctctgttgattaaataggatttcgaaatttc
gatactgcgacacttttttccgaaacttcgaacttctgtgatggggaatagtgtcggaagcagctcctcgacgtt
tttcgaaatgattgttgatgatttgtttttcgggttcattataatgcgatctgaataaatttcaaattaattttg
gcaatgaaaatatggattaaaatagaaataagcctgcaagcatagaggaaaccagattttcggttttttttttca
gaaaaatgacaaaaattaagcgcaggaatgaaaatagatgaaaaaaaaccgtttcttcgaacatttgtagaattt
gtgttggttttttttaaaaggataatgcgaaattttggagttatatgcacttcactgaaaaacggatagttctaa
tgggaaggaaaattcttattcgtgaagttattgggcccattttcttcaatttgctcgatgatttaagaggcactg
aagaaaatgcgaggaaattattttttttaattgtctgactctacggatttttttttaatatccactattttttcg
ggattttttttttgataattctctgttttgaacaagattttataacacagaaacataggaaaatgccgaacttta
gctctgaaaactattaaaagttatttttatcatgaagtacaatttttcacggagaaacccgacacaaataaaagt
tttacgtgatgttcaacgtttaatataaattttcaaacaaataaatcgaatattggccaaaaaaactaaagaaaa
cagagtaaaaagttcaaaaataagattgcaattgttgaaaaacaatgaaaacaattgctcgtaaagttatggcga
agtacgcaaaagcctctgcgtacttcgcaatctaccgtagtcatcaattaatttttttgtcagtcgcgcgcgaca
acatgtcgtgccgtgccgagaaatactgcataggatataaaaacaaagaaacgttaagtgatagctgaaaatatc
agtttgatttaaatggctacaaggttattccttgacacaaaaaatatcccgtagggaaaactacagtaattcttt
aacatctttaaatttcgatttaaatttcggaaacattgatttatcgattgaatattgaaattaagccgaaaatta
aaaactaatacgaggaaacgaagaaaaatgaatatcgatgtcactattcgaaaagaaaatcatttcaaaaatccg
taaatcgactaaagcgctacagtagtcattttaagtattaatatagttctcgctacgagatattttgcgcactat
gcattctcagagttttgtgttcccgtatacacagtgctcaaattcttcgtccaaaaaatttctgagcttatttca
agtttgatccaactcttgttaatgtcttatataactttaaaacgattcaaaaaacgattaggtcaaaaagtttga
tttttaacgccgccaaaaaaatttgcatacgctttataagcaacttttgtaccaagtttatatttcttttgagcc
agacttggacaagaagttagcattttgtgtcagcgcatattgaaatttcactaccatttctaatatactgtaaag
gatagttacttttgtggaaaatctgaacttttatcaattgcaccataaaagacgaggttaccaagtgttcacagt
atgaacttcacacgtggtgttagagtgtcccattgatctacgtagttcacattgttcacaaatgttcacattatc
cagatattctaattcaGAAACTAGTATacaCCTTTctcCatTTCATTGCACTTCTCCaTTCATACcCAACTACCC
GTGATATCCTATACTTtTaCTctctctctctcatgtccaatgtccCttCAGAAgctgctTCCTGGCATCTTcCTC
CTccttcttctgCcAAATCTTtCTGCCAGCCGGGGgacgggactcttTGTGTAATGTTGTCTTCTTCTTTTCctt
catctacagcagCATCGCCTACTGTCATTCCTTCCCATTCCCGCgtagCCGCCTGcCGAGTGTCCTTCAACTCTc
CGTCTCTTcTACAACTGttCACTCTCTCTcgCTCTCTcattgcatttTGGAACatacagatagggagtcaGAGAG
ATAgagagtGAGAAAAGAAgcgGAGAGACGGTGTTGcTGTGAGTCAGAGACgaagaGTGTGTACTGCTCCGgCCG
TCCGTTTGTTCGTCCGCAtCGGCAGTCttttCTCTCattctctcattcttcaatgttctctagcCTcTTTTtTcg
tttattttaTTctgTATACacgttcctctctacctgatattctcccacacatagcttttTTATTGATTTGTTGAt
Tgttgttaagcggttttttttgttttctattctatctaccgtggacggagaaaatacactgtttctataatttgc
taatctttccaacaactaaaatatctcAGTGGTTcTACCTaaatcacttcAAACATGGCaCATCTTGTTGAAGGA
ACcTCgATtATTGATGGAAaATGGCAaTTGCCAATtTTGGTCACCGAtTTGAAtATtCAAAGGTGAGgATTTAAA
AttatataTTTAgAAAAtAttaactttcaatagtactgcatgtttagcagttgttcttaaataactgcaattgca
ggaagttatagaaaaagattcaatgcacattttctgaattcaagtcattttgtcagaataagtgataattgagtt
attctcggattgaggttaagcctaaaccaatcctaggcccaagcctaagtctaagtctacgactaactataagaa
taagcctaagtctacgccgaagcctagcctaagtttaagcttaagcttaagtttaagccttaccctaaaccctag
cctaaattttcagaagattccggttaaatttttttccaaacatgaatgagacattttcaaactcagagtcttcca
atttccaataaatgtatttatttcttccagaagcatctctgtccttggaaatcttaatgtgGGAGGACTCATGCT
CgAACTTGTtAgCGAATGcGGTgagTttttTTTTcgaaTCTTATCACctcggtcAAGAtctcaaaGATctcaata
gaccatgatttctctcttttctactcaatataatctgttagatatatctgccactgtgtgCGCCTACGCGTTTGT
TACAACGAAAAGAtacgtggtgtgtgcaccattacgaaatgatgttcaatatcagtaaaaattgaaggcatggga
aaatgttgaaatctgctggaaaaaaatgttctggaaagatagggaacacttttggaaacacatcgtaacggagcc
cttgaagagtgcgccaagtgaaaaatttctcgtacaattctttcaagtttgctgaaaattcgtattttgaataaa
acagtttaattaaaaagttaatttttgagagatcttcacgaaattttttagggactgtgagctccgaaatagttg
acaagaagtcctctatacattttgaaacatcatagaaactatgcggaaCCTATCAAATATTtATGGgctcTTCTc
atcTcCTACCAGTTGcTCTTCTCTTTcTTCTTTTTCTTTtcatCCtaacCCCTgtTAATGTTGACTATTCgAGTg
cacgcGTGCGCATCTACATAAGCTGATTGTTTCGGAtgggacattcgctgttgGGTACATAAAgtttagaggctt
tccttgcagAGATATaaGAGCACACAATGATAGGGGGTCCCagGAGAgagtatcaaaacttgAGAagcaactggC
ATTCATCATGAccaagagcagaaagggcgcataggagaggcgcataaaaacgttttggaattaagttttcgcgcg
atttttagaacttgcagaagctgaagggatgaagattttctgcattagggtataacaatttgtgtgctcaatgtg
tttaatttccaagttcaaaatgtaatcatttgggcttcagctgaacaaacaatttacaaaacagctgtattgaaa
caagaatctaAAAAACTcCAAAtatTTcTATTTTTCcAGATgttGAACGaGATTGGTCTGAtCATGCTCTgTGGT
GGCCgGAGAAgcGgcGATGGCTtCAACAtACTCGATCgACTCTTGACCAGAATGGAATtACaGCTGAAACACAAT
TGGAgTTCACaCCaATGCATAAAGAAGCaAGAATTCAgttaccaGAtATGCAAATGATTGATGCgAGAGTTGATT
TCTCgGTaAATTCATTCAAAGCaACaAAGAAaTTgTGCcGtGATTTGGGtATTCGATATTCAGAGGAATTGTCTT
TGAAGAGGTAAgtaggaattgggaagtttttgatgttttatttttaatttaaataagaatggagttgtgaaattc
cttagttggttgaacgaggattgaagatccttgggaatcttaagcaactagggaaaatctatgcctgatcgaaat
cctgccccaaaagtttgagcaaggtcaaaagttaactactaccgagcatgtgaaataacccaataattcaaaatc
atataatttaaaatattaCAGATAtATTCCaCCAGAGGATCTTCGaCGTGGAACATCTGAcGCcGACAAcaTgAA
CGGtCCAcTcTCAATGCGTCCAGGAGAaGAATCAgTTGGaCCAATGACtCTcCGTAAAGCtgCTCCAATCTTTGC
TTCtCAATCGAATCTtGATATGCGcCGTCGTGGtcaaTCaCCcGCgCTCTCCCAATCTGGaCACATTTTCAATGC
tCAcGAAATGGGAACtCTtCCtCGCCACGgaaCAttgCCACGTGGtGTCAGTCCATCgCCaGGAGCATAtAAcGA
TACgATGAGAAGAACACCAATTATGCCAAGcATCAGTTTtAGTGAAGGACTTGAAAATGAGCAATTTGATGATGC
TCTtATTCATTCaCCAAGACTTGCTCCAAGCcgtGATACTCCaGTaTTTAGACCtCAgAACTATgTgGAaAAaGC
tGCgATtAATAGAGGATGGcTtGATTCTAGcAGATCACTtATGGAACAAGGAATttTTGAAGGAGATATTaTttT
aCTaCGATTCAAATTtATGAATTTCTTTGATTTGAATCCAAAATATGATCCAGTGAGAATtAATCAACTtTACGA
gCAAGCaAAATGGAGcATtTTaCTTGATGAATtCGATCACACaGAgGAAGAAGCcACACTaTTTGCTGCTCTTCA
ACTtCAAGCaACcCTgCAAAGAGATTCTCCtGAACCtGAAGAaAATAATAAAGATGATGTGGATATTCTTTTGGA
cGAgCTTGAgCAaAAcCTTGAcGCaGCTGCTcTtAACAGACGaTCAGATCTtACACAAGTTCCCGAGTTagCaGA
tTAtTTGAAATATATGAAACCAAAGAAaTTgGCaGCATTCAAAGGATTtAAAcGgGCATTCTTCTCgTTCCGTGA
CtTATATTTatCATATcATCAAAGCTCCTCAGATgtcAACTCagcTCCACTTGGACAcTTCTCATTGAAgGGATG
TGAAGTTAGTCaGGATGTTTCAGTtggaCAgCAgAAgTATCATATCAAATTgTTACTTCCAACTGCtGAAGGAAT
GaTTGAcTTCATTTTGAAATGcGATTCcGAGcaTCAATATGCCAGGTGGATGGCTGCgTGTCGgTTaGCATCCAG
AGGgAAgTCAATGGCTGATTCgTCATATCAACAgGAgGTgGAgAGcATCAAAAacTTgctcAAgATGCAaAgTGG
TaAGTTgttgattttacaatttaataagtgataatgaaattattttcttcgaatgAAAcaATTTTTCAGgtAAtG
GAAACGAAAAcGGAAAcagCAACACAGCTTCgCGAAAAGCcgccgctgtaaaactaCCAAATGATTTCAATGTTG
AtGAgTACATATCGTCgAAATAcGTacgacgagcacgcAGCAAGCAACAAATTCAACAGCGAGTATCAGATGCtC
ATGGAAATGTTCGACAACTCACgGCaACcGAAGCgAAACTtCAaTAtATCcGAGCaTGGCAAGCACTTCCcGAAC
AcGGAATTCATTATTTCATTGTaAGATTCCGAAATGCtAGAAAgGCgGAATTGGTGGCTGTTGCtgTgAATaGAc
TtGCAAAATTgAATATGGATAATGGAGAaAGTcTGAAGACaTGGAGgTTtgCaAATATGAAGAAGTGGCATGTCA
AcTGGGAaATTCGaCATcTcAAGGTtagtttttgatgaataaaatatttaagatctggacatgatcggaaatcga
aaaattgcaaaatgttgagaacgttttcgagacctattcatctaagtttcttgtaacaactttctgattgttaat
ctattttgtgatgtcttgaaattacgttttcatctcaaaatctttcctaatatgtatatctaaacacaaagaaca
attggctttcaaaaaatctttgtattgtttcaaaaattataatattgcgtttttgattcaattgttgttttctat
ccataagtctattcgccgtaacttactaaaaaattcaggtctttggtaatttaaaatctaaatcagataatgttc
tcaaagaccgaaactttttcggtaaacttggtgctgacaggaaggtaggcagacttcatgcctatttgcctacat
gccagcgttgcaccttgagcgttttagaaataaatttttaaaatctgttttgtgcctacataaaaggcttagata
aacccgaaaataaccgagaacaaactttttgaaattaattactttttttctttgagtatactattttatcatcct
atctccccaaTTTCCAGATTCAATTCGAAGAtGAgGATATCGAATTCAAGCCacTtTCcGCTGATTGcAAAGTcG
TTCAcGAGTTCATcggTGGATAcATTTTCCTgTCAATGcGAAGcAAAGAACAtTCtCAAAatCTTgAtGAAGAAC
TTTTCCAcaAACTTACaGGAGGATGGGCttagatatttaaatttctataatcttttgcaaaccaaagaattttaa
ttttaggctccaattccatctttttcgtttcaaaatttcaatatatatatttgttttctttcatttttcttgttt
ctcatttccccccttcccctcttccaaataaTTTTTcGTtttAATAAGACAAGTATACCGGATCgaaAAAAAGTT
TTATGTGCCTTTTCATATCTATGgattaataataattgtatgagaaaaattgaaaaatattataaaaattgaata
ataaaaactgatgaataaacatttaaaatcttcttccgcgttcctcgagcttttcgaatttttgttgaTTGCTGA
TTTCtAgtCtTCCaAcgTTTCGtTCaACTTCaatCAgcAacTGATCTCGCTCTTTTTCcAgtTTTTCaAATTCTC
CCATcAcaATATCATTGAGTTCcTTGTATTTtTCAACTTCTTTcCTCATATTcTCaACGTTTCGCATaTCtCGCT
GgAAtAAtAATcaggaaattatagtcattttccatcttttctggtagtaggcaaacgtaggtacaaggcaggcag
gcactgttctgctatctagctacctacctaactacctaggaatccttaatctgttctattcaaccatataaaatc
aatagtacaaaacatatcggcaatataaatttgatagaaaaaaagcaaataagtttgtatcccgttatttaaaaa
tttgttttcaaacggattgaaatcatgtgaaaacatgttcaagaagtatcaagaaatttgaaacaaaattttcaa
gcaacagcaaaaaatatctgaatgtagtcttcgcccataaatttgttttttcacgatttagaatcgaattgtttc
ttatttttcaaactagttttgtacgttttttttaaagttaaacaatttgtcagagcaaatcaagcaactttcacg
aatgatacgtacatcccttttcttacctgaaaattcctcttgtaatcctgaagcctcgcgatttctttgctcatc
tcatcaatgtttgcttgattttggccgagtaggacggcttgatccttgagtttctcgcgactatcaatgagatcc
gctgatattgaatcacgtagatcacggagatttgaaacttcgctctggaatggtgaagatggtttttatgaagaa
ttaatactttaataaaaattagttgaaaaaattgatcttatgattcaaatatcgttataaacagggggtttttat
tttgctttaaaaatatccaaaatagactcaaattcagaaatacgacagaataaatacgatgaaaatagaggaaaa
tttcaaatattaatttttagtgtgatttgacaattttggtttttaattccctccaaaacgagaagccacgcccgc
tttcgaaccaaccagaatcttcgaacgttacaaactttatctgattagttcaaacgtgggcggagcgagtcgttg
attggtcgcagttctcgctgtggaggaaattcaaatcatatattttaactattttgagattttttttctgttgtg
gtatttcagaatgttagattttttaaatgcaaaatctaaaatatcgaatattcagagttccTACCTGCAAGAAAT
CAATTTTtCCTTGCATCATgGCaGTtTGCTCacTATTtcCaGATTCAATTGTCCTTATCTGTTCCATATGTTTCA
ATCCaATTTCCTCAATTTCAATtTCTCTTTCTTCTTTCATCGCTTgCATTTGTGTCTCcTGTTCcTCTTTCATTC
GTTGCTCCAAATGcACAATTGCATATTTCAAATCACTtTGaGCTTCtAAcTTcTCTTTTTCAAgcTCcGCAATGA
ATGttACtAGAAgATCATCAGATTGTCTtAAgATATTcGCTGCTTTCTCTTTTGTCAATTCtTCCATtGTCTGaC
ATTCAACACTTTCtAgaCCaCCACTTGGAGCAATTGcTTCTGAcTGTGTTCCAGCATTTCtATgCATTTTtGCAT
GAAATACCAAACTTCGAATTCTTTGTTGtAAtttctggatatGAGTTGCTTGATGtGTCTTCATaTCaAACATaC
TTTTCTCTaCGTCTCTTGTTCTCTCTCTTTCTTCTCCTAATCCATTTTCAGCTATtCTCCAgAAtTGTTGAATTC
TTCCTCTTTCCTGTTGAGCTGCATTCAgTTCcACTCtaGTTTTtgTCAATTCTCCACTCAacTTATCaGCTCGAT
CTTTCAggCGgTCTTTtgtAATTTGaAttgcgtTtAAttTtTTCTCaaCTTCaGCTATcTTtCgggaatctgcat
tctgattctggattggctcaacaacttggactttctttttggcagcagatcctattgcaggttttcgacgggaag
ctgcattggtcgataatgtagactaaaattgttacaaattttttgataatatagtaattttaatagatttttgct
tttgctttaacagctaaaATTAcAaGaaAcaCAATccgtaGAAAACTgttggtcgacCAAAAAAATTacgatgAA
AACtGAAACAAAAAGAAcTCCGTCGAaCCGGATTCGAACCAGtGACCTAAGGATAtCTGcaaACTCTACAGTCCT
CCGCTCTACCAACTGAGCTATCGACGGCATGTTtTCGgtcgatgccgctgacacacacaaaactgaagaatgaga
gaaaacgcgcgcggaaagatggaagaccggttgccgacagttttccgttaagaggtgacggaaaaagtgtatacc
cacaaaaactgcgtatattccGGTTaTTTTtCaagtgttttcagcggtattttgaaaattaagcagcagaaaaaa
ctacatgcgcctttaaattgaagtactgtagagaaaacaaattgcaagcctaaaaacgaaaaaaaaacatttatt
TCGaATATCcCttttAAtACATACCCTgAtAGCTTTgGGTTTCTTCATaACTCgCTTGTTTTGaatatTaGaaga
CGTaTCACGcGAAGTCCCTgCCGTtTTCATAATTAATAggagTGaGCAcagactgcaaaGAGAGcccggaacaca
gaaagagctcagtaaagctgctttcaatttctcaagggcagttggaaaGAGTTGGCATgGtAACGGATGTCAATT
TGAGCACGCATCAACaGATTTGCGTGCGCGGAAAGCGGATTtttcaagagaataagcatatgttcataaaacgat
tatcgaaaaatTTTTATTTTTaGAAAtAAAATGAGAGATTAGACaGcaaggttTGGTGGGATTGGaacaaTTTCA
TCttcatcttcttcttccggattccaccaacgaacatccaacttgcgtccttcgaaatcttcattgacaggatcc
cagaggttataattgaaatttggacgtggaggtgGaTTGAATGGcTTTTCCTGAAACATGAAAaGaTattaaact
catctccaactcatgtataaaccggttctggaatgatgcagcaaacagcactggccaagatcaggaaacatgcca
actcgaataagattgcaatcatgtttcgtataaactaaaactgtttaatttccctcgagtatctaaactgttcaa
atgtgcttcttcaaaagttcacgTTTGCaAAAAAAAaCATTgatgaAAtTAATTAcgGAaCTTTAtTTGGGTTCG
ATAGACAGGaAAACAATGAATAAAACTGTGGAGGGGCTTttgGGGAGATCtTCTCGTAACAAATGATAAATTAaa
taGgATgTTTAGTCGACCTCCTCCATGCGGGAAGCATCCTCcTCAGCTCCcTCAATCTTGGCCTCAGCGGTGCAC
GAtGaTGGAACAGCAGAaTCtTCaATtTCgTCATCTCCGATATCGAGACCAAGCTTGATCATTCTGTAGATGCGG
GAAGCGTGAGATTGTGGCTCCTCaAGGGAGAATCCGGAaGcgAGAAGAGCAGTCTCGAAaAGAAGAACAACCAAa
TCCTTaACGGTCTTGTCaTTCTTatcgaCCTCgACaCGaTCACGAAGtGTCCTGAAAtagcaaaaacgtttgtga
atgttcattttaaaAtAGTTtttgggtAACTTACTTCATGATAGCGTGGTCTGGGTTGATtTCgAGaTGCTTCTT
GGCGGCCATGTATCCCATaGTaGAgGAATCACGAAGAGCTTGAGCtTTCATGATgCGCTCCATGTTaGCGGACCA
TCCGTACTCGGAaGTgACaATGCAGCATGGgGAAGAGACAAGACGGTTaGAaACtcCaACCTTCTCaAcCTTCTT
CTCCAAaATgTCCTTGATGACCTTGCAAAGGTTtTCGTAGGCaACCTTGTCCTCtTCGAACTTCTTCTTCTCCTC
CTCgGTTTCTGGGAGCTCGAGTCCTTCCTTGGTGACGGAGACaAGCTTCTTTCCaTCaTACTCCTTGAGtTGtTG
GACGCAGTACTCATCaATTGGGTCGCACATGTAGAGgACtTCGAATCCgCGGCTCTTaacACGCTCgACGAAaGC
TGAAGCaGCaACaACaTCCTTGGAcTCTCCgGTGATGTAGTAGATtTGaGTTTGGTTCTCCTTCATGCGGGAaAC
GTAtTCCTTGAGGGAAGTTGGCTCaTCTCCAGCgGAGGTaGAGTAGCGAAGGAAaTCGGAaAGCTTCTTGCGGTT
aGTaGAGTCCTCGTGGATTCCGAGCTTgAGaTTCTTTCCGAATTGCTCGTAGAACTTCTTGAAGTTGTCtTTGTC
CTCgGCaAcCTCGTCGAtaAGCTCCATGCACTTCTTGACAAGaTTCTTaCGGATGACCTTCAAGATCTTGGATTG
cTGGAGCATTTCACGaGAgATGTTaAGTGGAAGATCCTCAGAaTCGACGACTCCCTTGATGAAGTTaAGGTAtTC
TGGCATGAGCTCtTCGCAGTTCTCCATGATGAAGACACGACGAACGTAGAGCTTGATGGAGTTCTTGCTCTTCTT
GTTCTCGAAGAGATCaAATGGAGCTCTTTGTGGgaCGAAGAGAAGAGCACGGAAtTCaAGTTGTCCCTCAACGGA
GAAaTGCTTGACgGCaAGATGaTCtTCCCAGTCATTGGACAAGCTCTGAAATTAatggaattattgccaTaAAAt
aatTaaaActaaaaaTACCTTGTAGAACTCaGCaTAtTCtTCGTTGGAGATATCGTCTGGGTTTCTGGTCCAGAT
TGGCTTGGTCTTGTTaAGCTCTTCGTCtTCGAAGTACTTCTCCTTGATtTTCTTGGTCTTCTTCTTGTCagcgtC
gTCAgCgacgTTCTCgACCTCTCCcTCCTTCTTCTCCTCaTCCTTaGCCTCGACaGCCTCCTCaTCtTCAACCTC
CTTCTCA

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6375
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9375
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14175
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14475
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14700
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14925
15000
15075
15150

Enhanced BLAT Score Card

 (Back to Top)


 Nematode EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: unc-112 locus
        

     Reference Genome: C.elegans
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              C.elegans
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            15082
            1
            15082 0 622 
  
           
            820
            1961
            12404 0 
                 0 /
                 198
               
  
           
            833
            1961
            4170 0 
                 0 /
                 211
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.briggsae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5134
            4592
            15081 0 103 
  
           
            135
            12244
            12415 0 
                 29 /
                 1
               
  
           
            108
            12285
            12408 0 
                 1 /
                 2
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.brenneri
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5094
            4582
            15082 0 92 
  
           
            278
            5567
            13404 20 
                 129 /
                 11
               
  
           
            156
            12242
            12457 0 
                 18 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.remanei
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4922
            4786
            15082 2 86 
  
           
            132
            12190
            12412 0 
                 44 /
                 2
               
  
           
            227
            12310
            14932 0 
                 23 /
                 118
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              P.pacificus
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            1120
            13509
            15082 0  
  
           
            105
            12284
            12407 0 
                 5 /
                 0
               
  
           
            105
            12283
            12407 0 
                 5 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
C.elegans unc-112 locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the C.elegans unc-112 locus reference sequence that are conserved in the C.briggsae, C.brenneri and C.remanei orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

C.elegans unc-112 locus Genomic EvoPrint (Back to Top)

unc-112 locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.briggsae, C.brenneri or C.remanei.Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Enhanced BLAT Score Card (Back to Top)

Nematode EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile
