Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

Conserved Sequence Parsing Instructions
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Conserved Sequence Block Name:
EvoPrint
Evodifferences Profile
Enhanced BLAT Score Card


  
    
	
	  C.elegans unc-29 locus Genomic EvoPrint
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      Black capital letters represent bases in the C.elegans unc-29 locus reference sequence that are conserved in the C.remanei  and C.briggsae orthologous DNAs.


    Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
    
(ORF orientation in 3' --> 5' direction)


 gtctcattggtgtaGTTACTCGtCCtgTcTcgGGAGTtgtaGAcTTtGCcAGTGGtACcATGAAtTCgGTTCGtG
CaGTtGCtGGAACaAAtAGAGAAGCCGGACCaCTCAGACCAccccgtgTACTCCgagaagacaagatcgtcaaac
catattcgagcggagacgcttatGGATTCAAaGTgTTCAAaGACACaGAtCGtGGAGAGcTcGCtGAAACtGATG
AaTTtgTcACcTAcGCaTCtATcAGcGAaAAaATgGTtCTcATtaTaACgGAcCGTCGaTTGgtTcTcAGCAAaC
GtACtGATATGATGGGtGTgTGGCAgACaGAgTGGggAtCaGAgTACTGtAAGATCAAaGAGCCcgagtTtATTC
CaAATGGTGTCAAaATTTtgttgAAGGTAatataatatttttaaaaatATTTTTgTtcaatactgtaaaTTcCAG
GAAAAGAAgAAGGGaTTCcTcGGAATCGGtTCcTCtGAAGGAAAGATaATcACATTCCAAAACGcaGAAAAgaTT
CATCCAAAgctggcagccgcctacaagaaggcaacacttgcgtaatacTAtTTTTATttaatccgTTGATTTtct
catgaaacggtcaaaaatgttcataatactttctatcatattcttttttgtcacatttatttTttgTCTatcaaa
atattgaatcgctacggatcgtttttcttcatttcctggtttaaaaattattcccatatttaaagttttatgTAT
cgGCCTCCGtaattaaattaaataaagcattttcttgggtcattgcgaaacaattgcaaaatgtatttgtgtctg
caccctctgttcggtattaTAATCCCTAATATcTTtgtttctgtatactctcttcactctcAATCtagtttcaca
catttcgaaaaactcgtttttgattgtggcattgcaaaaaagaatataatccatattcctttctTCTAGTaagca
aatcaatattTGAATGTCATCGGAAAGtGTcaGcGAgGAgCAGaGtGATTAtCAATggCCtTGGTgTCtaATGGG
aCATTTtGGaATaCAATTTTtggagACTGAcaactcggagtcttttgttgagggagattTgTCCAGaGCcTAtAT
AAAGTgAGattttataacgattactttttaaataaatttttgatgtttggaaattgaaaattttgtagaAAaAtT
tAatgaacAAAcgCGCTCTAttgagtagatatttccgtactttattttgagatatttttttatcggaaactcatt
taaaaggagtatattaaatgcccctccgctaatatagtatttttaaaacctatttctcgaaatatactacccgtt
aagaattctacatatctgaaatatagaaaactttgtgacaattgcgccattctcataataatcttactttataat
gtttttcccttcataattaatttttttaaagagactacgagcttcttaaagcaagtaaacggccaagagaagaaa
aatcacctgagaaactacttcaagaagagatggacgagatcagcctgaaggaaattgatacagaaccgaatggtg
agatattatatggggagaagtacttttgattataattcgaaagattttcaggagaagaaaaactactcgacgaga
gagatacaccatacgaggttctaCCAAAgTGGaCtTgTGATaagcggAAAAtgaaAAAAAAGaAAGaaAAGGGca
GgTACAACTATCggTCtTTCgAAGAATAtTGGGAtgtttcgagctactggttgcaccaaattacgtggcttaatg
atttcggaaatcaaatgacggaggaaaatcggaatgagctgacgaaacaatgtgaagtgatgaaaccaatttatc
ccattgatcagcataaggatattctggtaatttttccaattcaattcattctgtctcatacattttattttagga
aaacccagactatcaacagatcaccaagacaatgattgagaaaaatcccgaatcgaccttTGAGGAtATttacac
gaAaCATTGTaAacTgATCAAGAAgcAAtCtGAaaatGATTttCAtgaTttTCAaacgaaatttgtcgcaaatcg
gtgcaaggatatgctatctagagttcgttattatttttttttcgagttttgagaccgtcaacattctaattagga
catacggagtcgcttcttttctgatagtataatttttctttctcttattttccgctatactcccatatttttatt
tttaaaaaagtgaatactggaaagaagtgagtacctgccctaatcttaaacaaatttttaaacaactcattttga
tttgttatataTTTCAGaTcAAACGaCTtGGtTATGCTCCaGGtTTTGAAGAATCTCAactacctgtcttccata
gtggagctgaacaagagatcgagagaccaattataaaagatatcagatacacgattgacgagtcttactccaaaa
aattctggtactgcctggaatgcaatatttaattatttcaatctttcagtggcgccgatcctcgagatgaaactt
cagatgaaccttcaacttccgaagaatcacaatctgctgatgtttcgtctgcagttatatcaatcaaAAATCCtg
cAGAAATTCGaTTtAACTTcGAtCCcGAAACtGAgcAgcActTGATTGCaTCtaAtGCtGAAAAgTTGTATGCAA
atGATCCaGAgATCAGCAAgtatTACTATCAaCGtTATCGtttatTTTCTCGTCTcgaccaggGGATCATtATGG
AtcGAGAAGGATGGTTCTCaGTtACaCCtGAAGCaATtGCtGAACAtATTGCtGATaGaGTaGTtCGtaACAAtG
TTTCtGTTGTTGTcGAtGCaTTcACTGGaGTTGGAGGaAATGCTATTCAaTTTGCaCTTCGTGGAGCtCATGGTA
tttagtttattttttattttattttaatcaatctttttttttgcaaaaaagttatttgatttcaaaatttatatt
tttaattttttgactaacatacgaaataaaaactcaaagcacactaattttcagtaattgctatcgacatggatc
ctgttcgacttaagtgtgcacgagaaaatgcacgcgtatacggagtcgaaaacTACATcGAcTTCATCTGtGCtG
AcTTTTTCGAtGTcgCtGCcACgTGGcaaGCTGataaaaaacttgctccaaaagtagatgcggtctttctgagcc
caccgtggggaggcccgtcatatttgaaagccaaggagtttgaccttgcaactggatgctgcccaaatggaattg
atatttttgatgtttcattgaagatttgtccgaatattgcatattttctgccaagaaatacaaaagttagccagg
tgagataatatacttagaacatcattagtctcatttgtttgtgaatgattttggatcaatcaaaacatttttcag
ctcgtcgagctagctaccaaagcaAAAAgTCGcATGGAAATcGAacaatctgctttgaattctaaaatcaaaacc
atcacagtctattatggaaaactggcatatcgcgaggaattatcaaattcaagcaaaacctaaatttttaaatat
tgcattttgttgttccaggtcgttaaactgttctcatctattgttgtgtttccgtgtttttacttatcaaaatga
aaatgttatgctttaaaatcttaatattaaAAGTGTcACATTGACAAATCATCaTCTTTCTTCcgcccgcccTTC
TCctaTTTCTCctgtgacggataacttgcataGTGGCTcCtGaAGaCAGCTGTtagttcccgtctcttcgaaCAA
TTACACACtATCAaTTcCCgTTTCTttagcTCTCTggatatctcgtcacccatttcTAAACTAATCAATCAATcA
ATAtTTGAtatttttggaaatttcgttaccaattagacttttttatgaaagcgtcactataaaagtattctagaa
gggtactgtatgtagtttctagaagttttgtaattttttttctccatttccagtaggaaattagtatatgcattt
cttaaactaatatattttaagacaaattaatcaatattcatagtttactcattttctgaggaagtctagaattat
gaagtAACATCTGGTTTACTgCggCTTATGACccaaaAGaCATTCaAATgAAAAtatAACACTTTTTgGTTTATG
ACAttTCaAAACcaccaagttcctcttttcttcatcattgctgttttggacagaaaatttttttttcaatttaaa
aaccttgtacaccagcgatcaaaaatagctcgaaaaaaccgcaaatagtttcaaggttatcaaaacatcctaaaa
tcaaggtttgacttagaaaaaaaccaaaagccatgttcagatgaactttttttcagttcacagtgctccaatttt
ttgtggtcacctattttcagcgcacaatataccaagtgaaatgttgaactcatcaagaaagtagagcttatgagc
tattactcaaaaagcttgcaaaacttcgccccaccatcatttttcaaacctcttttaaactttatgtTCATTTTT
AAAATgCTCAAcTctATTAATAcaTGCTCATTAAATTCCATTTCCcaccgcaatttccctatcctttcctctctc
tctctctctctctctctctctctctctcTcTTTCCTTggtTGCCCAAAAACAATGAGagaccAGtGaGAAacGTA
CGGAGGaATGGATgGATGATGATGTGGTGCTtctgttggtccctcctttccttttTGCTTTCCTATATTTAATCC
ATGTCttctTcTTCTtCCATCTCTGTCACACAATCATTCATGTCCTtcggccTCCTacttttgtTTTTCCTTTTc
TTTTAATCTTTTCTCttcCTTTCCaCaCACTTTTctctcttgatggcccAAGTGGAtgAGAgatggatccagaaa
gagatttagagagttagacaatttcagaaatttcaaatttcatttttcagatctcttatgaggaccaaccgacta
tcatggattttggtactaagtgtagttatatttcttgtaataataaataccataaacggtaaggaactacaaaac
ttatttataaattgtgttacctacatcatagattacacaaaaatcactgaatgaataaaagtggttggaaatttt
tttgaatgcaaaaaattatcacagccaacattgcattattctgaacttccacctctgaacttatttccactcagc
taagttttatgaaagacaaaaacggaaagagtcataagtatattgataagtatatttagactaaacttccactga
aactactccaccatattatgtagattgagatatcaaagtgtagttgtggacttataacattttaatccgaaaagc
ctgatgtttcatttatttattaaaaaaaaaaactttaaaaataaaaaaaaacatacttgagatgacaatatttca
aaatctccatgatatgccaatttcggccaccagcaacggAGAAAATGcAAaaaAAAGAGGCGTTGACGtCTCCAg
TCCCTCtttTCTCAGATTTTTtGACGGgCGGTTAATAtGTGCAAATaGTaCcCaaGGGAatttgaattctaacTT
GtGAACACTTttcATTTGTTTACAGTTGTTGACCTACTTTATaTATTTcaaaagtttcactgcaagtgaagactt
cctataatgggtaagtttttaaaaaatgcagttgcaaggtctaggcgtacataatataaatttgcattttgtatt
ttttctaaaaattatattttaattttagcatcgGATGATGAaGAAcGAtTgATGGTgGAtGTatTTCGAGGcTAt
AATTCtCTcATTCAGGTttcttTTTTcttcatttaaaatttcaaagttttaagtttcaaagtgtatttataaaaa
atgaaaaagatttggaaaatctttcatttatataTTaCAGCCaGTcCGAAATTCgTCtGAACTtCCatTAATtGT
cAAAATGGCTCTgcagttggTGTTGCTCATCAATGTGGTTggttccatTTTTTATTTtcgAtTTTCtttttttga
tttcttttaacacatttttcgAATTTTAGGACGAGAAAGATCAAGTTATGCAtACAAAtGTtTGGcTtACgcTGG
TTgGTTctgagtaaaaataaatattttagtaaaagtagcaatTTcCAGCAgTGGCAtGATTTTCAAATGAAATGG
AAcCctgtcaactacGGAGAAATCAAACAaATTCGAGTGTCaCCaGATAAAGTTTGGCTCCctgAcATaGTtTTg
TTCAAcAAGTGAGcattttccgtttttccatatcaaaaaaaagtttcagtgccGATGGAAATTACGAgGTgTCaT
TTATGTGTAATGTaGTtATtAATCAcAAAGGAGAtATGtTATGGGTtCCGCCGGCaATTTAtaAAAGCAGcTGTA
TcATTGGTGAGTTTTTtatttatcAAAAAAattagcaaattaccaaaatattttttttattgaaaagtgaagttg
agaaaatggtaccacaaactctcaaaaaaaaacgaaatacccaactttcgaaatttctgttttccaaattcaccg
tccaatttcgtccaagttcttccaaaaaatagtaacttgattataaagtggcgaaacgtgaacaagacttagaca
aaaacttgtctttcccaagttctgatcagagttaatatttttgaaccaaaatcaggctaaaagccatgttttgat
attttgagaactgaaaattcagtcatagcttcaaccacttttgaaccaaccagatgaagtgttcgaagatgctga
ttggttcaaaagttagtgttgctccttctttttgagaaattcaaattcaatagcgcttgttaaagattctaactc
tccctttattctttgttttgtttttttttcattatcatttcccgatacccaatctttttctcgaaaagcccaact
attaaaaacaattatatacagacgtcgaaTTCTTCCCATTtGATGAaCAAGTgTGCACTTTGGTATTTGGAAGTT
GGACtgtgagTTTTaagaataAATCatttttattcaacttcttCAtATaTTgCAGTATAACGAAAACGAAATAAA
ACTGGAATTTGTtCAaGCcgaacTtGTaGATGTcTCTGAATATTCAGCAAGcTCAATtTGGGATGTtATAGATGT
tCCAGCaTCaTTGGTCAATAAGAGATCgaGAATTGAATTTCAAGTTCGAATTCGtcGAAAgacactTTTtTACAC
tGTTGTCCTaATTATTCCAACgGTTTTAATGGCaTTCTTGAGTATGGCTGTATTTTTCTTgCCtACtGATTCtGG
Tgagtgaattttaattttaaaatatagttatatttcttctgaatctaacttagttttttaaaacacaaattgttt
tcttattttaattataatattCAGGAGAaAAAATaACGTTGACaATaTCTGTTCTacTCTccATCGTtGTGTTCT
TgCTtCTTgtatcaAAGATTCTTCCaCCAACaTCTTCTACaATtCCaTTgATGGCcAAATATCTaCTgttgacat
ttgttcttaatgttatcacaattctagttactgtcatcattatcaatgtatatttccgaggaccaagaactcatc
ggatgccacaatgggttcgagtcgtatttttgcaggtttgcctccaatttctgtttcaaacttataataaattta
tttgaatttttagTtTCTtCCAAAACTtGTtTGCATGAAAcGcCcAAAaTCgGCaTCtGAgcGAAGcGCtGTCCG
TTCTGGAATGGCcCAaCTaCCaGGAGTtGGaCAgTTtACatTaAGcCCaTCaGCtCATCATCCaCTaTGTCCATC
AGCtGAtGATCGAACaaCtACaATTCGAAatACtgCAtcaAATGAGACgTCTGCATATTATCCATTaAGTACtGA
TGCTCTacGaGCAATtGATGCAATtGAgTATATtACgGAACATTTGAAAaGAGAcGagcAACATAAATCgGTtAG
TTTttttgtgaacatttctcctaaaaaggatataaatttttgatgtgtttttgcacttttatgaaaattgaactt
aaagacacaaggagattaacaaatttatgcatttattgatagaattaacttggctttttataaaaaagatatcag
tgttttaagaattaattttgaaagaaaaggagttgaatgggaaagcgttcacctcgaaaacaaaaagggacacca
ctttttggcggtgagaccgacccaaataaattcgtgcaacattcgtttagaaaatcgagaaaccactataatttg
gtgcccgacaaagttgtattgaatttccgagaaataataaatttagtacattcaacaaaaaactttgaaacaact
ttattggggtcgaaataccaactctaacgttccgttttcAGTTCCGAGAcGAtTGGAAATAtGTGGCAATGATaa
tcgatcgattgctgctttatgtattttttggaataactgttggaggaacatgtggtattctgttttccgcgcctc
acgtattccagagtgagttctaatatatttctcaaccaaactacaactatgtattgTTTCAgGaATtGAtCAaCA
aGAAATGtTgGATCGtCTCAAagaGAAATAcGATACaGCaTCcAATATtccctgaattatagtaaattgttggtt
tctttcttcaaatagGTCTTTCAAActgtttacatttTTtaaAttGCGGGTgaaTCAAataacaAACTGGTTTag
tttgTTTTtatcaagtgtatgttttttttaataaaaaagaaaaattaacaacacctgggaaaggcctcctcgcct
ttttttgactttgagagctcactctggcgacacctccacctaaaactaaaaattttcttgaaacaccgataactt
attcacataaaataactggaaaaatccatcatggttaaaaaatttaaactatgaatatggttctttaattcaacg
ctcccttttctaaataggtttacaaattagggcagacttctgtaacgcttttgtgaatagaacatttaaatccaa
aactgatcagttcgtaccaataattgccaaattatgttgaactgaaacaagtttaatataaaaatccacaaaact
aataaattaatgtttctgccctctcattttttgtctccgaTCGGtTAGgTGATTGATGTAAccAAAAAGaagacg
caAAAAAAAtgggggaacatgGaATTTTGATAgccatcggcgAAGGTCACTtTCAATGGCAAtAACAcTtTTttt
cgttcaagggaatAAAAtAAAAaatcacaaAACCCaatggcttttcttttttttaattctcgaccaatgtcactt
gtcgttcctcgcaacatgtcgtacaatagattatttcaagagtaaagtttgattcgagaaaatcgaaaaaacctc
ccaTGCCACGTCATCAgtGATGTCAataagtgaatgtgttcagcgaagaggataagttgattcacataaatccaa
atcattaaattagatcatttttctgaagaacctctcagaaaaattaatgaaaaagttcaattgaacgaatagaaa
acacaaatttaggaaaaaaaagtttaggaagtcaggaactgagaacaaaacacaaaaattacaactaaaacggga
agttttcaattcttaattgaaaaatgaatttataaaatggaacaatcaagattctgcaacttttcaccaacaata
gtttcagaggttttccagaatcaaataggctacgtagcatgtacatgtccatcagggacctagaaaatatggatg
aggttctcaatattgctgaagctgttccaggaatgtcttaaaaatgatttgcaaaacctattgaaataattaaaa
aaaacatttttcaaagattctattagactctgtcctgtaaaaatgcactttgggtctctagaacatcttattttc
ttgctcaccacaaacaagttttagaacgtaatgtgaatatcgtttaatagtgatacaaattgacgtcatttgtga
acaatttcttatcataaacaacaacatcatcaacatcacaatcaacggatgcaaaccgtttgatcaactaaataa
agagaagaaaacgcagaaatcagagtaaacacaaatgtttgattacggacaatttatgtgatttatgaatggatt
ttgaattgatggtgaatcatggtcttaaacattgatagttgtaggaaattttctgacaaactttggagacttctc
ccgaaaacaagaaaacagttcctaattatttcatttacagatcctgaagaaagttatgaaactagcgcccaatga
aagatcatgggggataacacgaattgtcctcttttattaaaattaaatgatttgcaacgaaaaactcatggattt
ggactggtttttttcaattcaacttcagttttttaaacttctcacattgatgtcaggtttcatcataaactgtct
ttagctaatattcagtatttctccttgttttctagaaaattattccagtgttaagctttcacaaatattattttt
cctcaacttcttgaaataccgaggttcttctccatcaatattatgtccaaccttaccgatcaatgtccacttttc
ttggcggtcgaccatctaatggacacatgtgaaaataaaattaaaaaaaaaacggagactacatgcatcgttctc
gacgaacttaacctttttctagcgacgacagatgcacctttttgaggaattgaggaaaaaaaggtgtctaatgaa
taacagaacacttgaagaatataacaagtatgttactgattttcttcaagttttgaactacagtgacgtttttat
tgactaaaggatcaaaataataatgtctaagagattgaagattagaaacagtcacacttgaatatgtagcttttg
atcagttattatgaacctcaatagacaatgtataaatattaaattaaattaaattcaacgaaatatttctaaatg
ttttagaatttttaaaaaaatgtagagttgatttccaaaagttaccagaaaaaacatggtaatcacccaatgtcg
agtaacttcacaaattgttaaacccaaaaccttctgatatgtctgcagatcaaacgtaatgtaaccctattgctc
caatttgaaaggttatatttcggttcatttagaagagagcaatgaggcaatgaaaattaatttcaaaataataga
aaaataattggaaattatcattttagtggtcattttttataaaaacaaagaaaaacaaccgagccagagttaagt
aatagggtacaacactaatagagaatatacggcatatagagtttcaggcaaaatggtgtttaaaaaatgggcaga
atagactagcagaattttttgaattaaaaattgcacaggagcaaaaaaatatgttcaaaattttcgaaaaaaata
attaaactttactcgagtgaaaatatgtgatttttgatattttcccaaaccgacggtcatttctcttcttacctt
tttgggaattgtctacatgaccttgaaatgttaaaatctaactgacccattgttcagtgaagttttccattttct
ttttcatctctcgtaactgttttactgcttttgcctccaaaatttaaccaacatcacattgAACAAGTTTAAACA
ACATTTTCAGACGAgTAGTAGgTGTTtggagatgtcagtcagtttgaTGATTCCGTAAAaagaaatatatattag
agattatggaagaactgagagaatTAGAGAGAcATGTAcATACTGGTTAGAAGATGgAAAgTGGGCGGAGTCGGG
ACtgGGAGGAGCAtccaaggcaattgaaaagGTATAAATGgaaatgaTTTCTtggAGGATTtccATGTTCacatt
tcatactttgattttttactaattttactaattaaacccatagtattcaaatttatgagcacatttttccaaaaa
tttcgagattcaaatttaaagccacaatattcaagtctcatatgcttcttcatttgtgacgcgctgcgttttaaa
attgttgaaatatttaaagtgttcaacttgaaaacttaaaattaattttgaaaaagcaacgaaaaaatcgaaatt
ttttcgattaaaactgaacccgaaaaattttttaaccaaaaacaaactattaaaaaaaaattacatcctagttct
cactattttccttgacgaattctcgtttacattgaaaatgccgaaaatgtttttaaaaaagtcaaatTTgCAGAA
TGCATatctcgatagtccttcttgTATCtcTaGTacCTCTTaCCgCgTCaCAAATGATtCGtCAaTGtGGcTGTG
GAGAaATtgAAggaTGtaTgGGAAgtGCgACgGgtGGATTCATGAAgTGtGCtGATCAaTGcCAgAACCACGTgG
CAGCtATGGGaGCcAACTATCCAGCtTTGAGACAATGcATGtTggcaAAGGAaCCAGCtATCACtAGAGCtGCCA
ACTGtCAaAAATCtAAcCTtCAGAAtGCGTgAGTtttattttgcagtttaattttaattatgtttctgaactgag
aaacgtgagaaacgttaaacgttgctaaaaaataaacatcaatattcCAGATGCTCgaGATCcGGAGGTGGtATG
GTtcgcaAACGTTAtCCAGAaACTCttAAgCTTGCtGCcTTCACTGAAGTcAACTCtATCCTccaaagaTCTGGA
ATCCAAGCtGAAGCAAAGGCcTTCCTtgCAGTCGGAAAGAAgtTTGCCACcTGTGTcATGAAGTGTATGGATCGT
GGATCtACcGGAcACTGtTAcAAGAAgCTtGGATGtGGACTtGAcCTtCCACCAGATAGCaTTCTcGTtCAATCa
ACCAAACAATGtGCaATCAACTCtGGATTCGAtACatCtGGAGTtCGTCAAcTtTGcAAcTGTGTtGCTGGAACT
GGtGTCCGCAAtCTtGCTCCATTGTGCAAcCGCATtgtGATCTCTTAACTtTcctcTTacggcctctttaatagA
TAATTGTACATTAcGGTACCAaccaacatttatactttaagccttcgcatttatcgtttaatgaaaccttaactt
ttcaaattttattttttaagcactcacacagagtgcacttgaaagggacattacaaatacatcattagtttcacc
aatatctgaagccgtttggtattaattcaaacaaacacatttttcaaaaggaaaaatctctctactacaccgagt
ccaatagtctgtgaaaaatagtagatgaaaattaataaaaattgaataaacatctcacaaatccccatgtcaatt
tagcaaaatacattttcaaaaaatgcacagtttatgtttgacaataaatgaaaaataaactcatggaaatgtata
aattagctttaaaaagttgaagttcccgtagaagttggcacatggttttgaaaaattaaaagaaggaatcctgaa
aaatattcacggaattttagcttttaaaattaaaaataaaacagtaaaattaatttaacacttacaacgatttta
gcaggtaagtatttaactttgaaaaaaaaacttaccaaactactatcatcacttgattctttcctaggtgtatta
cttgatcgaaggattatcggtgatccattagcttcaaaggcaatgtcatttgatgaaaaaattgttggatgtact
gttgatattccggttcccaaatgtctcattccagaagacgttccaaatccacttccaaacccatcacttttatat
gct
  
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12375
12450
12525
12600
12675
12750
12825
12900
12975
13050
13125
13200
13275
13350
13425
13500
13575
13650
13725
13800
13875


unc-29 locus Genomic Evodifferences Profile - Relaxed EvoPrint

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Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.remanei or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

GTCTCATtGGtGTAGTTACTCGTCCTGTCTCgGGAGTTGTaGACTTTGCCAGTGGtACCATGAAtTCGGTTCGTG
CaGTtGCTGGAACAAATAGAGAAGCCGGACCACTCAGACCAccccgtgTACTCCgAGaagacaagatcgtcaaac
catattcgagcggagacGCTTAtGGATTCAAAGTGTTCAAAGACACAGATCGTGGAGAGCTcGCTGAAACTGATG
AATTtGTCACcTACGCATCTATcAGcGAaAAaATgGTtCTCATTATaACgGAcCGTCGaTTGGTTCTcAGCAAAC
GTACTGATATGATGGGtGTGTGGCAGACaGAgTGGGGAtCaGAGTACTGTAAGATCAAaGAGCCcGAGTTTATTC
CAAATGGTGTCAAAATTTTGtTGAAGGTAATAtAataTTTTTaAAAAtATTTTTGTTcaatacTGTaaaTTcCAG
GAAAAGAAGAAGGGATTCCTcGGAATCGGTTCcTCTGAAGGAAAGATAATCACATTCCAAAACGCAGAAAAGATT
CATCCAAAGCTgGCAGCcgccTACAAGAAggcaacacttgcgTAATACTATTTTTATTTaATCCGTTGATTTTCT
CatGAAAcgGTCAAAAATGTTCATAATAcTTTcTATcaTATTctTTTTTGTCACATTtATTTTTTGTCTATCAAA
ATATTGAATCGcTACGGATCGTTTTTCTTcaTTTCcTggTTTAAaaattattcccatATTTAAAgtTTTATGTAT
cgGCCTCCGTAATtaAATTAAATAAAGcaTTTTctTGGGTCATTGCGAAACaaTTGCAAAATGTATTtgtgtctg
caccctctgttcggtattaTAATCCCTAATATCTTTgTTTCTgTataCTCTCTtCACTCTCAATCTAGTTTCACA
cATTTCGAAAAactcgtttttgATTGTGgcattgcaaaaaagaatataatccatattcctttcTTCTAGTaagCa
AaTCaaTAtTTGAATGTCATCGGAAAGTGTcaGCGAgGAgCAGaGTGATTAtCAATGGCCtTGGTGTCtAATGGG
ACATTTTGGAATaCAATTTTtGGAGACTGAcaacTCGgAgtCTTtTGTtGAgGGAGAtTTGTCCAGAGCcTATAT
AAAGTgAGAttttATAACgattacTTTTTAAataAATTTttGATgtttggaaATTgaaaattTTgTAGAAAAATT
TAATGAacAAACGCGCTCTATTGAGTAGatatttccGTACTTTaTTTTgaGATATTTTtttatcggaaactcatt
taaaaggagtatattaaatgcccctccgctaatatagtatttttaaaacctatttctcgaaatatactacccgtt
aagaattctacatatctgaaatatagaaaactttgtgacaattgcgccattctcataataatcttactttataat
gtttttcccttcataatTAAttTTTTTaaAGAGAcTACGAGCTTCTtAAAGCAAGTAAACGGccAAGAgAAGAAA
AAtCACCtGaGaAaCtACTTCAAGAAGAGATGGAcgagatcagcctgaaggaaattgatacagaaccgaatggtg
agatattatatggggaGAAGTACTTttgattataattcgaaagATTTTCAGGAGAaGAAAAAcTaCTCGAcGAGA
GaGATAcacCATACGAgGTTCtaCCAAAGTGGACtTgTGATAAGCGGAAAAtGAAAAAAAAGaAAGAAAAGGGcA
GGTACAACTATCGgTCTTTCGAAGAATATTGGGATGTTTCgAGCTacTGGtTGcacCAAattACGTGGCTTAATG
ATTTcGGaaaTCAAATGACggaggaaaatcggaatgagctgacgaaacaaTGTGAAgtgATGAAaCCAATtTATC
CcATTGATCAGCATaaggatattctggtaatttttccaattcaattcattctgtctcatacaTTTTaTTTTAGGA
AAACCcagacTATCAACagATCACCAAGaCAaTgAtTGAgAaAAAtcccGaAtcGACctTTGAGGATATTTAcaC
gaAACATTGTaAACTGATCAAGAAgCAATCTGAAAATGATTtTCATGATTTTCAaACGAAATtTGTcgcaaatcg
gtgcAAgGATATGcTATCtAGAGttcgtTATtaTTTTTTTTTCgaGTTTtgagaccgtcaacattctaattagga
catacggagtcgcttcttttctgataGTATAATTTTtctttctcttattttccgctatactcccatatttttatt
tttaaaaaagtgaatactggAAAGAAGTGAgtacctgccctaatcttaaacaaatTTTTAaacaactcATTTtga
tTTGtTATATATTTCAGaTcAAACGACTTGGtTATGCTCCAGGTTTTGAAGAATCTCAActacctgtcttccata
gtggagctgaacaagagATCGAgAgACCaaTTATAAAAGAtaTCAGATACaCGATtGAcgaGTCTTAcTcCAAAA
AaTTCtggtactgcctggaatgcaatatttaattatttcaatctttcagtggcgccgatcctcgagatgaaactt
cagatgaaccttcaacttccgaagaatcacaatctgctgatgtttcgtctgcagttatATCAATCAAAAATCCtg
CAGAAATTCGATTTAACTTcGATCCCGAAACTGAgCAgCACTTGATTGCaTCtAATGCTGAAAAgTTGTATGCAA
ATGATCCAGAgATCAGCAAGTAtTACTATCAACGTTATCGtttatTTTCTCGTCTCGAccaggGGATCATTATGG
AtcGAGAAGGATGGTTCTCAGTtACACCtGAAGCaATTGCTGAACAtATTGCTGATaGaGTaGTTCGTaACAATG
TTTCTGTTGTTGTcGATGCATTCACTGGAGTTGGAGGaAATGCTATTCAaTTTGCACTTCGTGGAGCTCATGGTA
TTTAGTTTATTttttattttattttaatcaatctttttttttgcaaaaaagttatttgatttcaaaatttatatt
tttaattttttgactaacatacgaaataaaaactcaaagcacactaatTTTCAGTAATTGCTATCGACATGGATC
CtGTTCGACTtAAgTGTGCaCGAGAAAATGCaCGcGTaTACGGaGTCGaaaACTACATcGACTTCATCTGTGCTG
ACTTTTTCGATGTCGCtGCCACgTGGCaaGCTGAtAAAAAACTtGCTCCAAAAGTAGAtGCgGTcTTTcTGAGcC
CACCgTGGGGaGGcCCgTCaTATtTGAAAgCcAAGGAgTTtGAccTtGCaACTGGaTGcTGcCCaAATGGAATtG
ATATTTTTGATGTTTCatTGAAgATTtGtCCGAATATTGCaTATTTTcTGCCAAGAAAtACAAAAGTtAGCCAGG
TgAGATAAtATacttagaacatcattagtctcatttgtttgtgaatgattttggatcaatcaaaacatttttcag
ctcgtcgagctagctacCAAAGCAAAAAGTCGcATGGAAATCGAaCAaTCTgCtTTGAAttCtAAAATCAAAACC
ATCACAGTCTAtTATGGAAAAcTGGCATAtcgcgaggaattatcaaattcaagcaaaacctaaatttttaaatat
tgcattttgttgttccaggtcgttaaactgttctcatctattgttgtgtttccgtgtttttacttatcaaaatga
aaatgttatgctttaaaatcttAATATTAaAAGTGTCACATTGACAAATCATCATCTTTCTTCcgcccgcccTTC
TCCTATTTCTCCTgTGACGgATAACTTGCataGTGGCTCCTGAAGACAGCTGTtAGTTcccgTCTCTTCGAaCAA
TTACACACTATCAaTTCCCGTTTCTTTagCTCTCTGgaTATctcgtcacccatTTcTAAACTAATCAATCAATCA
ATATTTGAtATTTTtggaaatttcgttaccaattagactTTTTTATGAAAgcgtcactataaaagtattctagaa
gggtactgtatgtagtttctagaagttttgtaattttttttctccatttccagtaggaaattagtatatgcattt
cttaaactaatatattttaagacaaattaatcaatattcatagtttactcattttctgaggaagtctAGAATtat
GAAgtAACATCTGGTTTACTGCGGCTTATGACCCAAAAGACATTCAAATGAAAAtATAACACTTTTTGGTTTATG
ACAtTTCAAAACCACcAAgttcctcttttcttcatcattgctgttttggacagaaaatttttttttcaatttaaa
aaccttgtacaccagcgatcaaaaatagctcgaaaaaaccgcaaatagtttcaaggttatcaaaacatcctaaaa
tcaaggtttgacttagaaaaaaaccaaaagccatgttcagatgaactttttttcagttcacagtgctccaatttt
ttgtggtcacctattttcagcgcacaatataccaagtgaaatgttgaactcatcaagaaagtagagcttatgagc
tattactcaaaaagcttgcaaaacttcgccccaccatcatttttcaaacctcttttAAACTttatgTTCATTTTT
AAAATGCTCAACTCTATTAATACATGCTCATTAAATTCCATTTCCCACCGCAaTTTCCCTATcCTTTCCtctctc
tctctctctctctcTCTCtCTCTCTCTCTCTTTCCTTGgtTGCCCAAAAACAATGAGaGACCAGTGAGAAAcGTA
CGGAGGAATGGATGGATGATGATGTGGTGCTtctgttggtCCCTCCTtTCcttTTTGCTTTCCTATATTTAATCC
ATGTCTTCTTCTTCTTCCATCTCTGTCACACAATCATTCATGTCCTTCggcCTCCTaCTTTTgTTTTTCCTTTTC
TTTTAATCTTTTCTCTTCCTTTCCACACACTTTTCtctcttGATGGCCcAAGTGGATGAGAgatggatccagaAA
GAGAtTTAGAGAGttAGACAATTTcagaAATTTCAAATTTCAtttttcaGaTCTCTtATGAGGaCCAAccgacta
tcATGGATTTTGgTACTaagtgtagttatatttcttgtaataataaataccataaacggtaaggaactacaaaac
ttatttataaattgtgttacctacatcatagattacacaaaaatcactgaatgaaTAAAAgtggTTGGAAATTTT
TttGAATgcaaaaaattatcacagccaacattgcattattctgaacttccacctctgaacttatttccactcagc
taagttttatgaaagacaaaaacggaaagagtcataagtatattgataagtatatttagactaaacttccactga
aactactccaccatattatgtagattgagatatcaaagtgtagttgtggacttataacattttaatccgaaaagc
ctgatgtttcatttatttattaaaaaaaaaaactttaaaaataaaaaaaaacatacttgagatgacaatatttca
aaatctccatgatatgccaatttcggccACCAgcaacgGAGAAAATGCAAAAAAAAGAGGCGTTGACGTCTCCAg
TCCCTCttTTCTCAGATTTTTTGACGGgCGGTTAATAtGTGCAAATAGTaCCCaaGGGAATTTGAAttctaacTT
GTGAACACTTttcATTTGTTTACAGTTGTTGACCTACTTTATaTATTTCAaaagtttcactgcaagtgaagactt
cctataatgggtaagtttttaaaaaatgcagttgcaaggtctaggcgtacataatataaatttgcattttgtaTT
TTTTCTAAAAATTATaTTTTaATTTTAGCATCGGATGATGAAGAAcGATTGATGGTgGATGTATTTCGAGGcTAT
AATTCTCTCATTCAGGTttcTTTTTTCttcatttaaaatttcAAAGTTTtAAGTttCAAAGTGTATttATAAAAA
ATGAAAAAgatttgGAAAATCTtTCAtTTATATaTTaCAGCCAGTCCGAAATTCGTCTGAACTtCCAtTAATTGT
CAAAATGGCTCTgcagttggTGTTGCTCATCAATGTGGTTGGTtccatTTTTTATTTTCGATTTTCTTTtTTTGA
TTTcTTTTaacacATTTTTCGAATTTTAGGACGAGAAAGATCAAGTTATGCAtACAAATGTtTGGCTtACgCTGG
TTgGTTCTgagtaaaaataaataTTTTAgtaaaagtagcaaTTTCCAGCAgTGGCAtGATTTTCAAATGAAATGG
AACCCTGTCAACTAcGGAGAAATCAAACAAATTCGAGTGTCACCAGATAAAGTTTGGCTCCCtGACATAGTTTTG
TTCAACAAGTGAGcaTTTTccgTttttcCAtAtcAAAAAAAAgTTTCAGTGCCGATGGAAATTACGAgGTGTCaT
TTATGTGTAATGTaGTTATTAATCAcAAAGGAGATATGTTATGGGTTCCGCCGGCAATTTATAAAAGCAGCTGTA
TcATTGGTGAGTTTTTTaTTTaTCAAAAAAAttagcaaattaccaAAATATTttttttattgaaaagtgaagttg
agaaaatggtaccacaaactctcaaaaaaaaacgaaatacccaactttcgaaatttctgttttccaaattcaccg
tccaatttcgtccaagttcttccaaaaaatagtaacttgattataaagtggcgaaacgtgaacaagacttagaca
aaaacttgtctttcccaagttctgatcagagttaatatttttgaaccaaaatcaggctaaaagccatgttttgat
attttgagaactgaaaattcagtcatagcttcaaccacttttgaaccaaccagatgaagtgttcgaagatgctga
ttggttcaaaagttagtgttgctccttctttttgagaaattcaaattcaatagcgcttgttaaagattctaactc
tccctttattctttgttttgtttttttttcattatcatttcccgatacccaatctttttctcgaaaagcccaact
attAAAAACAATTatATACAGAcGTCGAATTCTTCCCATTTGATGAACAAGTGTGCACTTTGGTATTTGGAAGTT
GGACTGTGagTTTTAAGAATaAATCATTTTTATTCAACTTCtTCATATATTgCAGTATAACGAAAACGAAATAAA
ACTGGAATTTGTTCAAGCcGAACTTGTAGATGTCTCTGAATATTCAGCAAGCTCAATtTGGGATGTtATAGATGT
TCCAGCATCATTGGTCAATAAGAGATCgAGAATTGAATTTCAAGTTCGAATTCGtCGAAAGACaCTTTTTTACAC
TGTTGTCCTaATTATTCCAACgGTTTTAATGGCATTCTTGAGTATGGCTGTATTTTTCTTGCCTACTGATTCtGG
TgAGTgaATTTtAATTTTAAAatatagttatatTTCTTctgaatctaacttagTTTTTTAAAAcacaaattgttt
tcttattttaattataataTTCAGGAGAAAAAATAACGTTGACAATaTCTGTTCTaCTCTCCATCGTTGTGTTCT
TgCTTCTTGTaTCaAAGATTCTTCCACCAACATCTTCTACAATTCCATTGATGGCCAAATATCTACTgtTgACAT
TTGttcttAATGTtATCACaATTCTaGTTACTGTcATCATtATCAATGTaTAtTTCCGaGGACCaAGAACTCATC
GgATGCCACAaTGGGTTCGaGTCGTaTTTTTgcaggtttgcctccaatttctGTTTCAaacttatAAtAAATTTA
TttgaaTTTTtAGTTTCTTCCAAAACTTGTtTGCATGAAACGCCCAAAaTCgGCATCtGAgcGAAGCGCtGTCCG
TTCTGGAATGGCcCAACTACCaGGAGTtGGaCAgTTtACaTTaAGCCCATCaGCtCATCATCCaCTaTGTCCATC
AGCTGAtGATCGAACAaCTACAATTCGAAATACTGCAtcaAATGAGACGTCTGCATATTATCCATTAAGTACtGA
TGCTCTAcGAGCAATTGATGCAATTGAGTATATtACgGAACATTTGAAAAGAGAcGAgCAACATAAATCGGTtAG
TTTTTttgtgaacatttctcctaaaaaggatataaatttttgatgtgtttttgcacttttatgaaaattgaactt
aaagacacaaggagattaacaaatttatgcatttattgatagaattaacttggctttttataaaaaagatatcag
tgttttaagaattaattttgaaagaaaaggagttgaatgggaaagcgttcacctcgaaaacaaaaagggacacca
ctttttggcggtgagaccgacccaaataaattcgtgcaacattcgtttagaaaatcgagaaaccactataatttg
gtgcccgacaaagttgtattgaatttccgagaaataataaatttagtacattcaacaaaaaactttgaaacaact
ttattggggtcgaaataccaactctaacgttccgTTTTCAGTTCCGAGACGAtTGGAAATAtGTGGCAATGATAA
TCGATCGAtTgCTgctttatgtattttttggaataactgttggaggaacatgtggtattctgttttccgcgcctc
acgtattccagagtgagttctaatatatttctcaaccaaactacaactatgtattgTTTCAGGAATTGATCAaCA
aGAAATGTTGGATCGtCTCAAAGAGAAATACGATACaGCaTCcAATATTCCcTGAATTATAgtaaattgttggtT
TCtTTCTTCaaATAGGTCTTTCAAActgTTTAcATTTTTTAAAtTGCGGGTgAATCAAAtaaCAAACTGGTTTAG
TTTGTTTTTAtcaagtgtatgttttttttaataaaaaagaaaaattaacaacacctgggaaaggcctcctcgcct
ttttttgactttgagagctcactctggcgacacctccacctaaaactaaaaattttcttgaaacaccgataactt
attcacataaaataactggaaaaatccatcatggttaaaaaatttaaactatgaatatggttctttaattcaacg
ctcccttttctaaataggtttacaaattagggcagacttctgtaacgcttttgtgaatagaacatttaaatccaa
aactgatcagttcgtaccaataattgccaaattatgttgaactgaaacaagtttaatataaaaatccacaaaact
aataaattaatgtttctgccctcTCATTTTTTgTCTCcGaTCGGtTAGGTGATTGATGTAACCAAAAAGaagacg
cAAAAAAAAtGGgGGAACATGGAATTTTGATAGCCATCGgCGAAGGTCACTTTCAATGGCAATAACACTTTTTTT
cgTTCaagGGAATAAAATAAAAAATCACAAAACCCAATGGCTTTTcTTTTTTTTAATTCTCGACCAATGtcactt
gtcgttcctcgcaacatgtcgtacaatagattatttcAAGAGTAAAGtttgaTTCGAGAAAatcGAAaAaAcctc
ccATGCCACGTCATCAgTGATGTCAAtaagtgaatgtgTTCaGCGAAGAGGATAAGTTGattcacataaATCCaA
ATCATTaAATTAGATCATTTTTctgaagaacctcTCAGAAAAAttaATGAAAAAgttcaattgaacgaaTAGAAA
aCACAAAtttaggaaaaaaaagtttaggaagtcaggaactgagaacaaaacacaaaaattacaactaaaacggga
agttttcaattcttaattgaaaaatgaatttataaaatggaacaatcaagattctgcaacttttcaccaacaata
gtttcagaggttttccagaatcaaataggctacgtagcatgtacatgtccatcagggacctagaaaatatggatg
aggttctcaatattgctgaagctgttccaggaatgtcttaaaaatgatttgcaaaacctattgaaataattaaaa
aaaacatttttcaaagattctattagactctgtcctgtaaaaatgcactttgggtctctagaacaTCTTAttttc
ttgctcACCACAAACAAGTtttagaacgtaatgtgaatatcgtttaatagtgatacaaattgacgtcatttgtga
acaatttcttatcataaacaacaacatcatcaacatcacaatcaacggatgcaaacCGTTTGATCAACTAAAtaa
AGAGAAGAAAacgcagaaatcagAGTAAACACAAatgtttgattacggacaatttatgtgatttatgaatggatt
ttgaattgatggtgaatcatggtcttaaacattgatagttgtaggaaattttctgacaaactttggagacttctc
ccgaaaacaagaaaacagttcctaattatttcatttacagatcctgaagaaagttatgaaactagcgcccaatga
aagatcatgggggataacacgaattgtcctcttttattaaaattaaatgatttgcaacgaaaaactcatggattt
ggactggtttttttcaattcaacttcagttttttaaacttctcacattgatgtcaggtttcatcataaactgtct
ttagctaatattcagtatttctccttgttttctagaaaattattccagtgttaagctttcacaaatattattttt
cctcaacttcttgaaataccgaggttcttctccatcaatattatgtccaaccttaccgatcaatgtccacttttc
ttggcggtcgaccatctaatggacacatgtgaaaataaaattaaaaaaaaaacggagactacatgcatcgttctc
gacgaacttaacctttttctagcgacgacagatgcacctttttgaggaattgaggaaaaaaaggtgtctaatgaa
taacagaacacttgaagaatataacaagtatgttactgattttcttcaagttttgaactacagtgacgtttttat
tgactaaaggatcaaaataataatgtctaagagattgaagattagaaacagtcacaCTTGAATATGtagcttTTG
ATCAGTTAttatgaacctcaatAGACAAtGTAtaaatattaaattaaattaaattcaacgaaatatttctaaatg
ttttagaatttttaaaaaaatgtagagttgatttccaaaagttaccagaaaaaacatggtaatcacccaatgtcg
agtaacttcacaaattgttaaacccaaaaccttctgatatgtctgcagatcaaacgtaatgtaaccctattgctc
caatttgaaaggttatatttcggttcatttagaagagagcaatgaggcaatgaaaattaatttcaaaataataga
aaaataattggaaattatcattttagtggtcattttttataaaaacaaagaaaaacaaccgagccagagttaagt
aatagggtacaacactaatagagaatatacggcatatagagtttcaggcaaaatggtgtttaaaaaatgggcaga
atagactagcagaattttttgaattaaaaattgcacaggagcaaaaaaatatgttcaaaattttcgaaaaaaata
attaaactttactcgagtgaaaatatgtgatttttgatattttcccaaaccgacggtcatttctcttcttacctt
tttgggaattgtctacatgaCCTTGAAATGttaaaatctaaCTGACCCATTGTTCagtgaagttttccattttct
ttttcatctctcgtaactgttttactgcttttgcctccaaaatttaaccaacatcacattgAACAAGTTTAAACA
ACATTTTCAGACGAGTAGTAGgTGTTTggAGATGTcaGTCAGtttgaTGATTCCGTAAAaAGAaatatatatTAG
AGAttatggaagaactGAGAGAATTAGAGAGACATGTACATACTGGTTAGAAGATGgAAAGTGGGCGGAGTCGGG
ACtGGGAGGAGCATccaaggcaattGAAAAGGTATAAATGGAAatGATTTCTtgGAGGATTTCCATGTTCACATT
TCATAcTTTgATTTTTTactaattttacTAATTAAAcccatAGTATTCAAatttatgagcacatttttccaaaaa
tttcgagattcaaatttaaagccacaatattcaagtctcatatgcttcttcatttgtgacgcgctgcgttttaaa
attgttgaaatatttaaagtgttcaacttgaaaacttaaaattaattttgaaaaagcaacgaaaaaatcgaaatt
ttttcgattaaaactgaacccgaaaaattttttaaccaaaaacaaactattaaaaaaaaattacatcctagttct
cactattttccttgacgaattctcgtttacattgaaaatgccgaaaaTGTTTTtaaaaaagtcAAATTTgCAGAA
TGCATATCTCgaTAgTccTTCTtgTATCTCTaGTaCCTCTTaCCgCGTCACAAATGATTCGTCAATGTGGCTGTG
GAGAaATTGAAGGATGTaTGGGAAGTGCgACGGGtGGATTCATGAAGTGtGCTGATCAATGcCAgAACCACGTgG
CAGCtATGGGAGCCAACTATCCAGCtTTGAGACAATGCATGTTGGCAAAGGAACCAGCTATCACtAGAGCTGCCA
ACTGTCAaAAATCtAACCTTCAGAATGCGTGAGTTTTattttgcagtttaattttaattatgtttctgaactgag
aaacgtgagaaacgttaaacgttgctaaaaaataaacaTCAATaTTcCAGATGCTCgaGATCCGGAGGTGGTATG
GTTCGCAAACGTTATCCAGAaACTCTtAAgCTTGCTGCcTTCACTGAAGTCAACTCtATCCTcCAaAGATCTGGA
ATCCAAGCtGAAGCAAAGGCCTTCCTTgCAGTCGGAAAGAAGTTTGCCACCTGTGTcATGAAGTGTATGGATCGT
GGATCtACcGGACACTGtTACAAGAAgCTTGGATGtGGACTtGACCTtCCACCAGATAGCATTCTCGTTCAATCa
ACCAAACAATGTGCaATCAACTCTGGATTCGATACatCTGGAGTTCGTCAAcTtTGcAACTGTGTtGCTGGAACT
GGTGTCCGCAATCTtGCTCCATTGTGCAACCGCATtgtGATCTCTTAACTTTCCTCTTACggCCTCTTTAataGA
TAATTGTACATTAcGGTACCAAccAACatttatACTTTAAGcCTTcgcatttatcgtttaatgaaaccttaactt
ttcaaattttattttttaagcactcacacagagtgcacttgaaagggacattacaaatacatcattagtttcacc
aatatctgaagccgtttggtattaattcaaacaaacacatttttcaaaaggaaaaatctctctactacaccgagt
ccaatagtctgtgaaaaatagtagatgaaaattaataaaaattgaataaacatctcacaaatccccatgtcaatt
tagcaaaatacattttcaaaaaatgcacagtttatgtttgacaataaatgaaaaataaactcatggaaatgtATA
AATTAgctttAAAAAgttgaagtTCCCGTAGAAgTTGGCACATGgttttgaaaaattaaAAGAAgGAAtCCTGAA
AAAtattcacGGAATTTTAGcttttaaaattaaaaataaaacagtaaaattaatttaacacttacaacgatttta
gcaggtaagtatttaactttgaaaaaaaAACTTACCAAACTACTaTCATCACTTGaTTCTTtcctaggtgtatta
CTTGATCgaaggaTTaTCGGTGATCCATTaGCTTCAAAGGCAATGtcatttgatgaaaaaattgttggatgtact
gTTGATattccgGtTCCCAaATGTCTCATTCCAGAAGACGTTCCAAATCCacttccaaacccatcacttttatat
gctg

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Enhanced BLAT Score Card

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 Nematode EvoPrinterHD  -  Generate EvoPrint and EvoDifferences Profile


  
 Gene Name: unc-29 locus
        

     Reference Genome: C.elegans
    



 Click on individual Species and Composite eBLATs to
view eBLAT alignments.



  
    
      Score
    
     =  
    
    
      Total number of aligning bases.
    
  
  
   
     Start/End
   
    =  
   
   
     First and last aligning bases in reference sequence.
   
  
  
    
      Ns
    
     =  
    
    
      # of Sequence gap(s).
    
  


 
View test species eBLAT to identify gap(s).








  
    
      R/D
    
     =  
    
    
       Sequence rearrangements and/or duplications.
    
  
  
    
        R
    
    
      =  
    
    
      Total # of aligning bases unique to the 2^nd or 3^rd eBLAT
    
  
  
    
        D
    
    
      =  
    
    
      Total # of common aligning bases
    
  
  
    
      Red
    
    
      =  
    
    
       Common to 1^st, 2^nd  and 3^rd eBLATs
    
  
  
    
      Brown
    
    
      =  
    
    
      Common to the 1^st and 2^nd eBLATs
    
  
  
    
      Magenta
    
    
      =  
    
    
      Common to the 1^st and 3^rd eBLATs
    
  






 
    
         
            
              C.elegans
              (Ref  Sequence)
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            13804
            1
            13804 0 58 
  
           
            70
            4625
            4697 0 
                 0 /
                 12
               
  
           
            77
            4604
            4684 0 
                 0 /
                 19
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.remanei
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            5117
            14
            13095 0 103 
  
           
            281
            6999
            7558 0 
                 11 /
                 145
               
  
           
            125
            6999
            7189 0 
                 0 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.briggsae
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            4177
            1
            13775 0 99 
  
           
            458
            6023
            7501 0 
                 57 /
                 266
               
  
           
            232
            5893
            6466 0 
                 59 /
                 38
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
    
         
            
              C.brenneri
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            2336
            3812
            13099 3  
  
           
            1650
            1
            4848 0 
                 378 /
                 278
               
  
           
            1398
            45
            3256 1 
                 404 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
               
           
   


    
  
  
    
         
            
              P.pacificus
         
             Score
             Start
             End
             Ns
             R/D
        
  
           
            462
            5809
            7251 0  
  
           
            169
            4861
            6464 0 
                 89 /
                 80
               
  
           
            149
            3963
            13409 0 
                 149 /
                 0
               
 
               
               
                 All Alignments
               
                 1^st
               
                 None
C.elegans unc-29 locus Genomic EvoPrint (Back to Top)
Black capital letters represent bases in the C.elegans unc-29 locus reference sequence that are conserved in the C.remanei and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
Nematode EvoPrinterHD - EvoPrint and EvoDifferences Profile

C.elegans unc-29 locus Genomic EvoPrint (Back to Top)

Black capital letters represent bases in the C.elegans unc-29 locus reference sequence that are conserved in the C.remanei and C.briggsae orthologous DNAs. Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

unc-29 locus Genomic Evodifferences Profile - Relaxed EvoPrint (Back to Top)

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.remanei or C.briggsae.Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Enhanced BLAT Score Card (Back to Top)

Nematode EvoPrinterHD - Generate EvoPrint and EvoDifferences Profile

Black capital letters represent bases in the C.elegans unc-29 locus reference sequence that are conserved in the C.remanei and C.briggsae orthologous DNAs.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.

Black capital letters represent bases conserved in all species and colored bases represent sequences present in all species except C.remanei or C.briggsae.

Reference genome repeat sequences: Blue underlining indicates single-copy repeats and Red underlining identifies multi-copy repeats.
